Wall clock time and date at job start Tue Mar 31 2020 17:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34777 * 120.00078 * 2 1 4 4 O 1.21279 * 119.99848 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99999 * 180.02562 * 3 2 1 6 6 C 1.52999 * 109.46953 * 179.97438 * 5 3 2 7 7 C 1.53005 * 109.46867 * 179.97438 * 6 5 3 8 8 C 1.52999 * 109.46867 * 179.97438 * 7 6 5 9 9 C 1.50698 * 109.47332 * 180.02562 * 8 7 6 10 10 O 1.21287 * 119.99499 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00377 * 180.02562 * 9 8 7 12 12 C 1.46497 * 119.99928 * 359.97438 * 11 9 8 13 13 C 1.50698 * 109.46886 * 270.00390 * 12 11 9 14 14 H 1.07994 * 120.00600 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99702 * 179.97438 * 13 12 11 16 16 N 1.31518 * 120.00197 * 179.97438 * 15 13 12 17 17 Si 1.86806 * 120.00061 * 0.02562 * 15 13 12 18 18 H 1.48504 * 109.46778 * 89.99805 * 17 15 13 19 19 H 1.48499 * 109.47209 * 209.99860 * 17 15 13 20 20 H 1.48496 * 109.46893 * 329.99803 * 17 15 13 21 21 C 1.46504 * 119.99689 * 179.97438 * 11 9 8 22 22 C 1.50707 * 109.46935 * 90.00167 * 21 11 9 23 23 C 1.38227 * 119.62059 * 95.01845 * 22 21 11 24 24 C 1.38627 * 119.15702 * 179.74122 * 23 22 21 25 25 C 1.38669 * 118.42389 * 0.47826 * 24 23 22 26 26 C 1.38186 * 119.16143 * 359.49762 * 25 24 23 27 27 N 1.31856 * 119.61137 * 274.99275 * 22 21 11 28 28 H 1.09004 * 109.46681 * 300.00204 * 1 2 3 29 29 H 1.09001 * 109.46743 * 60.00390 * 1 2 3 30 30 H 1.08998 * 109.46970 * 180.02562 * 1 2 3 31 31 H 0.97002 * 119.99520 * 179.97438 * 2 1 3 32 32 H 1.09005 * 109.47329 * 59.99594 * 5 3 2 33 33 H 1.09000 * 109.47391 * 299.99729 * 5 3 2 34 34 H 1.08996 * 109.47417 * 59.99688 * 6 5 3 35 35 H 1.09001 * 109.47245 * 299.99431 * 6 5 3 36 36 H 1.09000 * 109.47425 * 60.00432 * 7 6 5 37 37 H 1.09001 * 109.46809 * 299.99803 * 7 6 5 38 38 H 1.08996 * 109.47417 * 59.99792 * 8 7 6 39 39 H 1.09001 * 109.47245 * 299.99536 * 8 7 6 40 40 H 1.08998 * 109.47243 * 30.00215 * 12 11 9 41 41 H 1.08997 * 109.46980 * 150.00484 * 12 11 9 42 42 H 0.96992 * 120.00111 * 179.97438 * 16 15 13 43 43 H 1.08997 * 109.47679 * 329.99634 * 21 11 9 44 44 H 1.09003 * 109.46652 * 209.99594 * 21 11 9 45 45 H 1.07998 * 120.41916 * 359.95342 * 23 22 21 46 46 H 1.08008 * 120.78688 * 180.22921 * 24 23 22 47 47 H 1.08002 * 120.42244 * 179.78279 * 25 24 23 48 48 H 1.07996 * 119.61757 * 180.25243 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6459 1.1672 -0.0006 6 6 4.1559 2.6097 -0.0011 7 6 5.6859 2.6096 -0.0011 8 6 6.1959 4.0521 -0.0022 9 6 7.7029 4.0522 -0.0028 10 8 8.3093 3.0018 -0.0019 11 7 8.3768 5.2194 -0.0033 12 6 7.6443 6.4881 -0.0039 13 6 7.3931 6.9224 -1.4249 14 1 7.7443 6.3145 -2.2455 15 6 6.7148 8.0960 -1.6774 16 7 6.4960 8.4754 -2.9175 17 14 6.1079 9.1480 -0.2580 18 1 7.1595 10.1271 0.1173 19 1 4.8797 9.8740 -0.6697 20 1 5.8023 8.2790 0.9068 21 6 9.8418 5.2193 -0.0033 22 6 10.3441 5.2187 -1.4242 23 6 10.6710 6.4154 -2.0338 24 6 11.1373 6.4032 -3.3393 25 6 11.2483 5.1832 -3.9891 26 6 10.9029 4.0274 -3.3151 27 7 10.4672 4.0764 -2.0713 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.9500 -0.8401 0.0004 32 1 4.0090 0.6535 -0.8908 33 1 4.0096 0.6532 0.8892 34 1 3.7929 3.1237 0.8888 35 1 3.7923 3.1233 -0.8911 36 1 6.0493 2.0955 -0.8909 37 1 6.0492 2.0961 0.8892 38 1 5.8326 4.5667 0.8873 39 1 5.8327 4.5652 -0.8927 40 1 6.6919 6.3580 0.5100 41 1 8.2334 7.2480 0.5095 42 1 6.0185 9.3007 -3.0951 43 1 10.2052 4.3296 0.5109 44 1 10.2051 6.1096 0.5101 45 1 10.5678 7.3478 -1.4987 46 1 11.4039 7.3225 -3.8397 47 1 11.6046 5.1366 -5.0076 48 1 10.9904 3.0729 -3.8127 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320785169.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:26 Heat of formation + Delta-G solvation = -73.730827 kcal Electronic energy + Delta-G solvation = -28447.024708 eV Core-core repulsion = 24500.518338 eV Total energy + Delta-G solvation = -3946.506370 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.28221 -40.70734 -40.30222 -36.91438 -36.14101 -35.54377 -34.58306 -33.35276 -32.88835 -31.72003 -29.94759 -28.56147 -27.36194 -25.39541 -24.46496 -24.11132 -23.05102 -22.06853 -21.32130 -19.84602 -19.06959 -18.13341 -17.87584 -17.65572 -17.16132 -17.08065 -16.89573 -16.70930 -16.56390 -16.09613 -15.94450 -15.20066 -14.84523 -14.80890 -14.65981 -14.38965 -14.08532 -14.01064 -13.84122 -13.70491 -13.37631 -13.27277 -13.20980 -13.07941 -12.68583 -12.62078 -12.43618 -12.32273 -12.18317 -12.06768 -11.89034 -11.64351 -11.49027 -10.94340 -10.77245 -10.69992 -10.59196 -10.30988 -10.12297 -9.82777 -9.37948 -8.23173 -6.28200 0.25006 0.49610 1.40915 1.44962 1.52255 1.65077 1.83723 2.27638 2.37953 2.40828 3.07476 3.11538 3.48990 3.71369 3.84668 3.92697 4.00144 4.05922 4.06734 4.27135 4.33550 4.39190 4.43750 4.46202 4.56442 4.60190 4.61626 4.68635 4.75784 4.80189 4.82089 4.84941 4.92200 4.93768 4.96348 4.98786 5.11765 5.29963 5.35556 5.36994 5.43559 5.50234 5.51862 5.73488 5.89819 6.25957 6.57326 6.65787 6.78303 7.20735 7.29530 7.32013 7.44790 8.92725 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009887 B = 0.003175 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2831.230051 B = 8817.191655 C =10515.474815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.726 5.726 3 C 0.504 3.496 4 O -0.591 6.591 5 C -0.132 4.132 6 C -0.100 4.100 7 C -0.086 4.086 8 C -0.135 4.135 9 C 0.513 3.487 10 O -0.571 6.571 11 N -0.594 5.594 12 C 0.212 3.788 13 C -0.519 4.519 14 H 0.027 0.973 15 C 0.022 3.978 16 N -0.942 5.942 17 Si 0.933 3.067 18 H -0.262 1.262 19 H -0.294 1.294 20 H -0.238 1.238 21 C 0.168 3.832 22 C 0.100 3.900 23 C -0.144 4.144 24 C -0.089 4.089 25 C -0.172 4.172 26 C 0.071 3.929 27 N -0.495 5.495 28 H 0.047 0.953 29 H 0.044 0.956 30 H 0.112 0.888 31 H 0.420 0.580 32 H 0.113 0.887 33 H 0.123 0.877 34 H 0.063 0.937 35 H 0.047 0.953 36 H 0.056 0.944 37 H 0.077 0.923 38 H 0.102 0.898 39 H 0.078 0.922 40 H 0.048 0.952 41 H 0.050 0.950 42 H 0.264 0.736 43 H 0.086 0.914 44 H 0.111 0.889 45 H 0.135 0.865 46 H 0.150 0.850 47 H 0.162 0.838 48 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.594 -13.461 6.128 14.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.379 5.379 3 C 0.292 3.708 4 O -0.472 6.472 5 C -0.171 4.171 6 C -0.138 4.138 7 C -0.124 4.124 8 C -0.175 4.175 9 C 0.302 3.698 10 O -0.451 6.451 11 N -0.324 5.324 12 C 0.091 3.909 13 C -0.558 4.558 14 H 0.045 0.955 15 C -0.177 4.177 16 N -0.582 5.582 17 Si 0.756 3.244 18 H -0.187 1.187 19 H -0.220 1.220 20 H -0.161 1.161 21 C 0.044 3.956 22 C -0.039 4.039 23 C -0.165 4.165 24 C -0.115 4.115 25 C -0.191 4.191 26 C -0.086 4.086 27 N -0.205 5.205 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.131 0.869 31 H 0.257 0.743 32 H 0.131 0.869 33 H 0.141 0.859 34 H 0.082 0.918 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.096 0.904 38 H 0.120 0.880 39 H 0.097 0.903 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.073 0.927 43 H 0.104 0.896 44 H 0.129 0.871 45 H 0.153 0.847 46 H 0.168 0.832 47 H 0.180 0.820 48 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -1.033 -13.916 6.489 15.389 hybrid contribution -0.145 1.539 -0.769 1.726 sum -1.178 -12.377 5.720 13.686 Atomic orbital electron populations 1.21649 0.79290 1.04138 1.01119 1.45797 1.08258 1.08817 1.75012 1.21292 0.91471 0.83479 0.74562 1.90706 1.71698 1.33378 1.51414 1.21664 0.89674 0.99038 1.06748 1.21253 0.94085 0.96101 1.02340 1.21207 0.94279 0.94007 1.02924 1.21663 0.90975 1.00328 1.04517 1.20970 0.91035 0.82921 0.74837 1.90605 1.71158 1.31634 1.51731 1.47949 1.05670 1.07092 1.71709 1.19757 0.93207 0.81959 0.96021 1.21361 1.35991 1.06535 0.91923 0.95472 1.25680 0.95530 0.98652 0.97798 1.70056 1.42673 1.24209 1.21282 0.85935 0.78220 0.79711 0.80505 1.18662 1.21997 1.16117 1.20276 0.80427 1.04007 0.90864 1.21707 0.95426 0.88767 0.97992 1.22056 0.98563 0.99012 0.96828 1.21875 0.96018 0.99461 0.94177 1.22411 1.01519 0.92977 1.02232 1.23149 0.95240 0.99771 0.90450 1.67515 1.12336 1.30200 1.10429 0.93410 0.93746 0.86936 0.74280 0.86913 0.85925 0.91799 0.93408 0.92509 0.90447 0.88016 0.90328 0.93392 0.93251 0.92673 0.89618 0.87080 0.84741 0.83196 0.82000 0.81197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.13 10.70 127.77 1.37 2.50 16 2 N -0.73 -10.97 5.71 -484.51 -2.77 -13.74 16 3 C 0.50 11.84 7.83 87.66 0.69 12.52 16 4 O -0.59 -20.24 15.98 -3.03 -0.05 -20.29 16 5 C -0.13 -2.54 5.70 29.85 0.17 -2.37 16 6 C -0.10 -2.70 4.50 30.60 0.14 -2.57 16 7 C -0.09 -2.57 4.50 30.60 0.14 -2.43 16 8 C -0.14 -4.88 4.25 29.85 0.13 -4.75 16 9 C 0.51 21.14 7.67 87.66 0.67 21.81 16 10 O -0.57 -25.51 15.56 -3.05 -0.05 -25.56 16 11 N -0.59 -24.10 2.44 -830.49 -2.03 -26.12 16 12 C 0.21 8.93 4.08 85.63 0.35 9.28 16 13 C -0.52 -27.00 9.69 25.60 0.25 -26.75 16 14 H 0.03 1.67 8.06 -2.91 -0.02 1.64 16 15 C 0.02 1.17 5.47 84.65 0.46 1.63 16 16 N -0.94 -55.63 13.96 21.45 0.30 -55.33 16 17 Si 0.93 39.85 27.47 68.60 1.88 41.73 16 18 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 19 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 20 H -0.24 -9.13 6.54 99.48 0.65 -8.48 16 21 C 0.17 6.17 5.76 85.63 0.49 6.66 16 22 C 0.10 3.92 6.36 42.55 0.27 4.19 16 23 C -0.14 -5.32 9.58 22.36 0.21 -5.10 16 24 C -0.09 -2.92 10.18 22.47 0.23 -2.69 16 25 C -0.17 -5.16 10.11 22.36 0.23 -4.93 16 26 C 0.07 2.40 11.18 84.67 0.95 3.35 16 27 N -0.49 -20.07 10.27 -183.88 -1.89 -21.96 16 28 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.42 3.12 8.83 -92.71 -0.82 2.30 16 32 H 0.11 1.79 8.14 -2.38 -0.02 1.77 16 33 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.06 1.79 8.10 -2.39 -0.02 1.77 16 35 H 0.05 1.52 8.10 -2.39 -0.02 1.50 16 36 H 0.06 1.81 8.10 -2.39 -0.02 1.79 16 37 H 0.08 2.12 8.10 -2.39 -0.02 2.10 16 38 H 0.10 3.28 7.40 -2.39 -0.02 3.27 16 39 H 0.08 3.26 8.00 -2.39 -0.02 3.24 16 40 H 0.05 1.94 5.50 -2.39 -0.01 1.92 16 41 H 0.05 1.90 7.32 -2.39 -0.02 1.88 16 42 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 43 H 0.09 3.18 7.42 -2.39 -0.02 3.16 16 44 H 0.11 3.36 7.79 -2.39 -0.02 3.34 16 45 H 0.13 4.75 8.06 -2.91 -0.02 4.72 16 46 H 0.15 4.09 8.06 -2.91 -0.02 4.07 16 47 H 0.16 3.57 8.06 -2.91 -0.02 3.54 16 48 H 0.17 4.64 8.06 -2.91 -0.02 4.61 16 Total: -1.00 -79.37 403.69 2.22 -77.14 By element: Atomic # 1 Polarization: 33.69 SS G_CDS: 0.08 Total: 33.77 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: 6.74 Total: 10.35 kcal Atomic # 7 Polarization: -110.77 SS G_CDS: -6.38 Total: -117.15 kcal Atomic # 8 Polarization: -45.75 SS G_CDS: -0.10 Total: -45.85 kcal Atomic # 14 Polarization: 39.85 SS G_CDS: 1.88 Total: 41.73 kcal Total: -79.37 2.22 -77.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320785169.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.414 kcal (2) G-P(sol) polarization free energy of solvation -79.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds