Wall clock time and date at job start Tue Mar 31 2020 17:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35499 * 116.99911 * 2 1 4 4 C 1.39172 * 119.52264 * 179.97438 * 3 2 1 5 5 C 1.37951 * 119.26346 * 180.02562 * 4 3 2 6 6 C 1.40284 * 118.35606 * 359.97438 * 5 4 3 7 7 C 1.47617 * 120.49915 * 179.97438 * 6 5 4 8 8 O 1.21587 * 120.00068 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00251 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00075 * 180.02562 * 9 7 6 11 11 H 1.08992 * 109.47085 * 35.00197 * 10 9 7 12 12 C 1.53001 * 109.46826 * 274.99922 * 10 9 7 13 13 C 1.53002 * 109.46963 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47092 * 60.00194 * 13 12 10 15 15 C 1.53006 * 109.47445 * 300.00075 * 14 13 12 16 16 C 1.53000 * 109.47023 * 155.00453 * 10 9 7 17 17 H 1.09002 * 109.47398 * 59.99929 * 16 10 9 18 18 C 1.52997 * 109.47060 * 299.99760 * 16 10 9 19 19 N 1.46496 * 109.47484 * 175.00385 * 18 16 10 20 20 C 1.36937 * 120.00458 * 180.02562 * 19 18 16 21 21 H 1.08000 * 119.99642 * 359.97438 * 20 19 18 22 22 C 1.38813 * 120.00408 * 179.97438 * 20 19 18 23 23 N 1.31614 * 119.99921 * 179.97438 * 22 20 19 24 24 Si 1.86802 * 119.99586 * 359.97438 * 22 20 19 25 25 H 1.48503 * 109.47082 * 90.00460 * 24 22 20 26 26 H 1.48501 * 109.46706 * 210.00151 * 24 22 20 27 27 H 1.48496 * 109.47078 * 329.99978 * 24 22 20 28 28 C 1.39523 * 119.00361 * 0.25358 * 6 5 4 29 29 N 1.31669 * 120.62970 * 359.47568 * 28 6 5 30 30 H 1.08999 * 109.47076 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47178 * 299.99966 * 1 2 3 32 32 H 1.09000 * 109.46578 * 60.00010 * 1 2 3 33 33 H 1.07994 * 120.36901 * 0.02562 * 4 3 2 34 34 H 1.08001 * 120.82401 * 179.97438 * 5 4 3 35 35 H 0.97006 * 119.99702 * 0.02562 * 9 7 6 36 36 H 1.09000 * 109.47437 * 60.00616 * 12 10 9 37 37 H 1.09002 * 109.47508 * 300.00018 * 12 10 9 38 38 H 1.09002 * 109.47067 * 300.00341 * 13 12 10 39 39 H 1.09000 * 109.47312 * 180.02562 * 13 12 10 40 40 H 1.09001 * 109.47375 * 180.02562 * 14 13 12 41 41 H 1.09002 * 109.47497 * 59.99850 * 14 13 12 42 42 H 1.09002 * 109.46589 * 300.00331 * 15 14 13 43 43 H 1.08996 * 109.47165 * 179.97438 * 15 14 13 44 44 H 1.09000 * 109.47325 * 295.00173 * 18 16 10 45 45 H 1.09008 * 109.47017 * 55.00082 * 18 16 10 46 46 H 0.97005 * 119.99584 * 359.97438 * 19 18 16 47 47 H 0.97010 * 119.99490 * 179.97438 * 23 22 20 48 48 H 1.08005 * 119.68405 * 179.71802 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2073 0.0000 4 6 3.4345 1.2686 0.0005 5 6 4.0552 2.5006 0.0011 6 6 3.2525 3.6511 0.0005 7 6 3.8670 4.9933 0.0016 8 8 5.0774 5.1078 0.0026 9 7 3.0862 6.0919 0.0016 10 6 3.6960 7.4239 0.0021 11 1 4.6128 7.4040 -0.5870 12 6 4.0220 7.8349 1.4393 13 6 4.6595 9.2258 1.4399 14 6 3.6838 10.2342 0.8300 15 6 3.3577 9.8232 -0.6073 16 6 2.7198 8.4320 -0.6076 17 1 1.8029 8.4519 -0.0184 18 6 2.3937 8.0210 -2.0448 19 7 1.3695 8.9163 -2.5884 20 6 0.9154 8.7403 -3.8682 21 1 1.3127 7.9417 -4.4770 22 6 -0.0554 9.5884 -4.3831 23 7 -0.4914 9.4195 -5.6134 24 14 -0.7431 10.9693 -3.3297 25 1 0.0749 12.1936 -3.5229 26 1 -2.1470 11.2439 -3.7285 27 1 -0.7039 10.5682 -1.9005 28 6 1.8647 3.5076 0.0048 29 7 1.3139 2.3117 -0.0010 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3632 0.5138 -0.8900 33 1 4.0210 0.3618 0.0005 34 1 5.1325 2.5775 0.0019 35 1 2.1205 6.0005 0.0012 36 1 4.7176 7.1168 1.8738 37 1 3.1052 7.8548 2.0285 38 1 5.5765 9.2055 0.8508 39 1 4.8922 9.5185 2.4637 40 1 4.1381 11.2251 0.8299 41 1 2.7669 10.2546 1.4189 42 1 4.2747 9.8029 -1.1963 43 1 2.6623 10.5414 -1.0417 44 1 3.2946 8.0868 -2.6548 45 1 2.0225 6.9961 -2.0543 46 1 1.0124 9.6334 -2.0413 47 1 -1.1702 10.0119 -5.9730 48 1 1.2362 4.3860 0.0090 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322344980.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:51 Heat of formation + Delta-G solvation = -37.777546 kcal Electronic energy + Delta-G solvation = -28735.671792 eV Core-core repulsion = 24790.724474 eV Total energy + Delta-G solvation = -3944.947318 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.13051 -40.04671 -38.57200 -37.68306 -34.83121 -34.33584 -32.82576 -31.98707 -31.46561 -30.06452 -29.28199 -27.60214 -25.53440 -24.52141 -23.64303 -22.81809 -22.01751 -20.80132 -20.58869 -19.93627 -18.81210 -18.00429 -17.54070 -17.35415 -16.36754 -16.03144 -15.25487 -15.15266 -14.83738 -14.64074 -14.48249 -14.38694 -14.20060 -13.87194 -13.64014 -13.48981 -13.34491 -13.12552 -12.90424 -12.74931 -12.58568 -12.18256 -12.07525 -11.73753 -11.50584 -11.24884 -11.08270 -10.99893 -10.83370 -10.59177 -10.40156 -10.28362 -10.27116 -10.09494 -10.05528 -9.73763 -9.59332 -9.08542 -8.90920 -8.79871 -7.24379 -5.78057 -3.13626 0.46203 0.89245 2.70998 2.73369 3.05578 3.34478 3.37082 3.43229 3.60053 3.87409 4.46342 4.55687 4.57089 4.63355 4.70873 4.77988 4.82905 4.93919 5.00149 5.03305 5.09646 5.23214 5.27837 5.31893 5.44145 5.48198 5.51386 5.52768 5.53949 5.59826 5.74215 5.78191 5.81764 5.98880 6.02232 6.06161 6.12442 6.16432 6.23754 6.42095 6.43554 6.48781 6.63904 6.77416 6.81652 7.40806 7.45130 7.98458 8.13553 8.40874 9.20035 9.92132 10.11955 11.40475 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009262 B = 0.003377 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3022.427099 B = 8288.526657 C =10599.109511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.305 6.305 3 C 0.340 3.660 4 C -0.198 4.198 5 C 0.017 3.983 6 C -0.225 4.225 7 C 0.570 3.430 8 O -0.540 6.540 9 N -0.716 5.716 10 C 0.156 3.844 11 H 0.092 0.908 12 C -0.126 4.126 13 C -0.115 4.115 14 C -0.122 4.122 15 C -0.109 4.109 16 C -0.105 4.105 17 H 0.075 0.925 18 C 0.162 3.838 19 N -0.754 5.754 20 C -0.244 4.244 21 H 0.089 0.911 22 C 0.005 3.995 23 N -0.934 5.934 24 Si 0.883 3.117 25 H -0.284 1.284 26 H -0.291 1.291 27 H -0.277 1.277 28 C 0.183 3.817 29 N -0.541 5.541 30 H 0.097 0.903 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.149 0.851 34 H 0.155 0.845 35 H 0.400 0.600 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.066 0.934 43 H 0.072 0.928 44 H 0.028 0.972 45 H 0.026 0.974 46 H 0.361 0.639 47 H 0.259 0.741 48 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.116 -12.899 17.980 23.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.211 6.211 3 C 0.162 3.838 4 C -0.219 4.219 5 C -0.009 4.009 6 C -0.230 4.230 7 C 0.357 3.643 8 O -0.418 6.418 9 N -0.366 5.366 10 C 0.051 3.949 11 H 0.110 0.890 12 C -0.165 4.165 13 C -0.153 4.153 14 C -0.160 4.160 15 C -0.147 4.147 16 C -0.125 4.125 17 H 0.093 0.907 18 C 0.035 3.965 19 N -0.400 5.400 20 C -0.373 4.373 21 H 0.107 0.893 22 C -0.191 4.191 23 N -0.582 5.582 24 Si 0.714 3.286 25 H -0.211 1.211 26 H -0.218 1.218 27 H -0.204 1.204 28 C 0.025 3.975 29 N -0.265 5.265 30 H 0.116 0.884 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.166 0.834 34 H 0.172 0.828 35 H 0.236 0.764 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.085 0.915 43 H 0.091 0.909 44 H 0.046 0.954 45 H 0.044 0.956 46 H 0.194 0.806 47 H 0.069 0.931 48 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 7.137 -13.282 17.730 23.274 hybrid contribution -0.608 1.139 0.529 1.396 sum 6.528 -12.142 18.260 22.879 Atomic orbital electron populations 1.22946 0.76651 1.03222 1.02961 1.86211 1.23441 1.24473 1.86959 1.20120 0.89525 0.84793 0.89405 1.21046 0.91817 0.99647 1.09380 1.21520 1.01291 0.89665 0.88387 1.20839 0.95000 0.94941 1.12263 1.17830 0.86614 0.83696 0.76150 1.90772 1.13710 1.86988 1.50324 1.45999 1.10180 1.05806 1.74628 1.21010 0.97253 0.80180 0.96431 0.89013 1.21903 1.01004 0.97127 0.96473 1.21480 0.98811 0.94275 1.00704 1.21609 0.99274 0.98476 0.96633 1.21523 1.01275 0.95792 0.96076 1.21674 0.98014 0.94706 0.98062 0.90682 1.20649 0.92172 0.93533 0.90133 1.42709 1.46829 1.36172 1.14288 1.19053 1.17014 1.13014 0.88265 0.89325 1.24667 0.99215 0.99087 0.96136 1.69705 1.33351 1.40544 1.14614 0.86564 0.78673 0.83308 0.80074 1.21052 1.21753 1.20354 1.22676 0.91631 0.94030 0.89198 1.67336 1.40501 0.98619 1.20029 0.88419 0.92006 0.91787 0.83368 0.82760 0.76418 0.91592 0.91877 0.91724 0.92062 0.91983 0.92075 0.91496 0.90924 0.95431 0.95588 0.80645 0.93068 0.81846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.37 101.05 1.05 1.33 16 2 O -0.30 -3.10 10.46 -18.19 -0.19 -3.29 16 3 C 0.34 3.75 7.49 -16.96 -0.13 3.63 16 4 C -0.20 -1.90 10.02 -39.34 -0.39 -2.30 16 5 C 0.02 0.17 9.70 -38.92 -0.38 -0.20 16 6 C -0.22 -2.57 5.89 -104.82 -0.62 -3.18 16 7 C 0.57 7.45 7.74 -12.43 -0.10 7.36 16 8 O -0.54 -8.58 16.08 5.29 0.09 -8.50 16 9 N -0.72 -8.48 4.26 -54.82 -0.23 -8.71 16 10 C 0.16 1.96 1.90 -67.93 -0.13 1.83 16 11 H 0.09 1.32 7.58 -51.93 -0.39 0.93 16 12 C -0.13 -1.38 5.49 -26.73 -0.15 -1.53 16 13 C -0.11 -1.17 5.92 -26.73 -0.16 -1.33 16 14 C -0.12 -1.34 5.92 -26.73 -0.16 -1.49 16 15 C -0.11 -1.47 5.08 -26.70 -0.14 -1.61 16 16 C -0.11 -1.47 1.80 -90.59 -0.16 -1.64 16 17 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 18 C 0.16 3.00 5.56 -4.05 -0.02 2.98 16 19 N -0.75 -17.28 5.13 -59.91 -0.31 -17.59 16 20 C -0.24 -6.82 10.47 -15.06 -0.16 -6.98 16 21 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 22 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 23 N -0.93 -29.27 13.97 55.49 0.78 -28.49 16 24 Si 0.88 21.75 27.74 -169.99 -4.71 17.04 16 25 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 27 H -0.28 -6.34 6.52 56.52 0.37 -5.97 16 28 C 0.18 1.98 10.71 -17.14 -0.18 1.79 16 29 N -0.54 -6.30 9.18 -12.96 -0.12 -6.42 16 30 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 32 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 33 H 0.15 1.07 8.06 -52.49 -0.42 0.65 16 34 H 0.15 1.43 7.73 -52.49 -0.41 1.03 16 35 H 0.40 4.10 6.45 -40.82 -0.26 3.84 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.07 1.11 7.18 -51.93 -0.37 0.74 16 44 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.03 0.48 7.30 -51.92 -0.38 0.11 16 46 H 0.36 8.01 4.71 -40.82 -0.19 7.82 16 47 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 48 H 0.16 1.44 6.41 -52.48 -0.34 1.10 16 LS Contribution 386.54 15.07 5.83 5.83 Total: -1.00 -33.94 386.54 -8.22 -42.16 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -7.43 Total: 9.28 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: -1.92 Total: -1.31 kcal Atomic # 7 Polarization: -61.33 SS G_CDS: 0.12 Total: -61.21 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: -0.11 Total: -11.78 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.71 Total: 17.04 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.94 -8.22 -42.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322344980.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.379 kcal (2) G-P(sol) polarization free energy of solvation -33.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds