Wall clock time and date at job start Tue Mar 31 2020 17:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35499 * 116.99911 * 2 1 4 4 C 1.39172 * 119.52264 * 179.97438 * 3 2 1 5 5 C 1.37951 * 119.26346 * 180.02562 * 4 3 2 6 6 C 1.40284 * 118.35606 * 359.97438 * 5 4 3 7 7 C 1.47617 * 120.49915 * 179.97438 * 6 5 4 8 8 O 1.21587 * 120.00068 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00251 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00075 * 180.02562 * 9 7 6 11 11 H 1.08992 * 109.47085 * 35.00197 * 10 9 7 12 12 C 1.53001 * 109.46826 * 274.99922 * 10 9 7 13 13 C 1.53002 * 109.46963 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47092 * 60.00194 * 13 12 10 15 15 C 1.53006 * 109.47445 * 300.00075 * 14 13 12 16 16 C 1.53000 * 109.47023 * 155.00453 * 10 9 7 17 17 H 1.09002 * 109.47398 * 59.99929 * 16 10 9 18 18 C 1.52997 * 109.47060 * 299.99760 * 16 10 9 19 19 N 1.46496 * 109.47484 * 175.00385 * 18 16 10 20 20 C 1.36937 * 120.00458 * 180.02562 * 19 18 16 21 21 H 1.08000 * 119.99642 * 359.97438 * 20 19 18 22 22 C 1.38813 * 120.00408 * 179.97438 * 20 19 18 23 23 N 1.31614 * 119.99921 * 179.97438 * 22 20 19 24 24 Si 1.86802 * 119.99586 * 359.97438 * 22 20 19 25 25 H 1.48503 * 109.47082 * 90.00460 * 24 22 20 26 26 H 1.48501 * 109.46706 * 210.00151 * 24 22 20 27 27 H 1.48496 * 109.47078 * 329.99978 * 24 22 20 28 28 C 1.39523 * 119.00361 * 0.25358 * 6 5 4 29 29 N 1.31669 * 120.62970 * 359.47568 * 28 6 5 30 30 H 1.08999 * 109.47076 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47178 * 299.99966 * 1 2 3 32 32 H 1.09000 * 109.46578 * 60.00010 * 1 2 3 33 33 H 1.07994 * 120.36901 * 0.02562 * 4 3 2 34 34 H 1.08001 * 120.82401 * 179.97438 * 5 4 3 35 35 H 0.97006 * 119.99702 * 0.02562 * 9 7 6 36 36 H 1.09000 * 109.47437 * 60.00616 * 12 10 9 37 37 H 1.09002 * 109.47508 * 300.00018 * 12 10 9 38 38 H 1.09002 * 109.47067 * 300.00341 * 13 12 10 39 39 H 1.09000 * 109.47312 * 180.02562 * 13 12 10 40 40 H 1.09001 * 109.47375 * 180.02562 * 14 13 12 41 41 H 1.09002 * 109.47497 * 59.99850 * 14 13 12 42 42 H 1.09002 * 109.46589 * 300.00331 * 15 14 13 43 43 H 1.08996 * 109.47165 * 179.97438 * 15 14 13 44 44 H 1.09000 * 109.47325 * 295.00173 * 18 16 10 45 45 H 1.09008 * 109.47017 * 55.00082 * 18 16 10 46 46 H 0.97005 * 119.99584 * 359.97438 * 19 18 16 47 47 H 0.97010 * 119.99490 * 179.97438 * 23 22 20 48 48 H 1.08005 * 119.68405 * 179.71802 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2073 0.0000 4 6 3.4345 1.2686 0.0005 5 6 4.0552 2.5006 0.0011 6 6 3.2525 3.6511 0.0005 7 6 3.8670 4.9933 0.0016 8 8 5.0774 5.1078 0.0026 9 7 3.0862 6.0919 0.0016 10 6 3.6960 7.4239 0.0021 11 1 4.6128 7.4040 -0.5870 12 6 4.0220 7.8349 1.4393 13 6 4.6595 9.2258 1.4399 14 6 3.6838 10.2342 0.8300 15 6 3.3577 9.8232 -0.6073 16 6 2.7198 8.4320 -0.6076 17 1 1.8029 8.4519 -0.0184 18 6 2.3937 8.0210 -2.0448 19 7 1.3695 8.9163 -2.5884 20 6 0.9154 8.7403 -3.8682 21 1 1.3127 7.9417 -4.4770 22 6 -0.0554 9.5884 -4.3831 23 7 -0.4914 9.4195 -5.6134 24 14 -0.7431 10.9693 -3.3297 25 1 0.0749 12.1936 -3.5229 26 1 -2.1470 11.2439 -3.7285 27 1 -0.7039 10.5682 -1.9005 28 6 1.8647 3.5076 0.0048 29 7 1.3139 2.3117 -0.0010 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3632 0.5138 -0.8900 33 1 4.0210 0.3618 0.0005 34 1 5.1325 2.5775 0.0019 35 1 2.1205 6.0005 0.0012 36 1 4.7176 7.1168 1.8738 37 1 3.1052 7.8548 2.0285 38 1 5.5765 9.2055 0.8508 39 1 4.8922 9.5185 2.4637 40 1 4.1381 11.2251 0.8299 41 1 2.7669 10.2546 1.4189 42 1 4.2747 9.8029 -1.1963 43 1 2.6623 10.5414 -1.0417 44 1 3.2946 8.0868 -2.6548 45 1 2.0225 6.9961 -2.0543 46 1 1.0124 9.6334 -2.0413 47 1 -1.1702 10.0119 -5.9730 48 1 1.2362 4.3860 0.0090 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322344980.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:50 Heat of formation + Delta-G solvation = -61.842456 kcal Electronic energy + Delta-G solvation = -28736.715325 eV Core-core repulsion = 24790.724474 eV Total energy + Delta-G solvation = -3945.990851 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.99452 -41.03102 -39.55324 -38.59220 -36.56957 -35.34443 -33.84449 -33.65722 -32.35198 -31.59990 -30.25225 -28.31295 -27.08481 -25.41125 -24.48462 -24.38786 -23.12894 -22.10273 -21.63687 -20.91502 -19.82513 -19.55477 -18.66075 -18.32126 -17.12879 -17.04717 -16.63552 -16.26774 -16.06705 -15.86214 -15.59350 -15.44031 -15.23341 -14.90428 -14.75495 -14.64052 -14.46965 -14.31842 -14.12958 -13.92936 -13.66733 -13.61257 -13.04031 -12.80092 -12.77505 -12.66158 -12.24871 -12.16772 -12.12431 -11.92518 -11.84067 -11.58341 -11.37992 -11.22245 -11.11418 -11.08313 -10.95303 -10.68207 -10.09392 -9.64910 -9.29020 -8.02461 -5.36292 -0.40369 0.09205 1.37939 1.42626 1.49917 1.76777 1.97597 2.09258 2.49058 2.72609 3.09211 3.29101 3.42115 3.60767 3.74201 3.76289 3.87859 3.91930 4.00445 4.03583 4.25926 4.30897 4.41598 4.42338 4.43996 4.46641 4.52777 4.55433 4.57281 4.66644 4.78011 4.85370 4.88636 4.99958 5.05252 5.10614 5.16716 5.21975 5.24819 5.30462 5.31578 5.41775 5.48323 5.60754 5.75344 6.05021 6.21070 6.46057 6.59732 7.08454 7.13600 7.83423 8.04611 9.19360 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009262 B = 0.003377 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3022.427099 B = 8288.526657 C =10599.109511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.310 6.310 3 C 0.329 3.671 4 C -0.193 4.193 5 C 0.015 3.985 6 C -0.236 4.236 7 C 0.571 3.429 8 O -0.573 6.573 9 N -0.710 5.710 10 C 0.161 3.839 11 H 0.070 0.930 12 C -0.118 4.118 13 C -0.112 4.112 14 C -0.115 4.115 15 C -0.111 4.111 16 C -0.091 4.091 17 H 0.090 0.910 18 C 0.161 3.839 19 N -0.752 5.752 20 C -0.236 4.236 21 H 0.049 0.951 22 C -0.064 4.064 23 N -0.986 5.986 24 Si 0.956 3.044 25 H -0.278 1.278 26 H -0.297 1.297 27 H -0.244 1.244 28 C 0.181 3.819 29 N -0.556 5.556 30 H 0.126 0.874 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.173 0.827 34 H 0.162 0.838 35 H 0.409 0.591 36 H 0.059 0.941 37 H 0.078 0.922 38 H 0.058 0.942 39 H 0.081 0.919 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.010 0.990 45 H 0.027 0.973 46 H 0.368 0.632 47 H 0.258 0.742 48 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.876 -12.548 20.956 25.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.217 6.217 3 C 0.150 3.850 4 C -0.213 4.213 5 C -0.011 4.011 6 C -0.242 4.242 7 C 0.359 3.641 8 O -0.453 6.453 9 N -0.361 5.361 10 C 0.056 3.944 11 H 0.089 0.911 12 C -0.157 4.157 13 C -0.150 4.150 14 C -0.152 4.152 15 C -0.149 4.149 16 C -0.110 4.110 17 H 0.108 0.892 18 C 0.035 3.965 19 N -0.398 5.398 20 C -0.367 4.367 21 H 0.068 0.932 22 C -0.255 4.255 23 N -0.636 5.636 24 Si 0.783 3.217 25 H -0.204 1.204 26 H -0.223 1.223 27 H -0.169 1.169 28 C 0.023 3.977 29 N -0.280 5.280 30 H 0.144 0.856 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.190 0.810 34 H 0.180 0.820 35 H 0.246 0.754 36 H 0.078 0.922 37 H 0.096 0.904 38 H 0.077 0.923 39 H 0.100 0.900 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.028 0.972 45 H 0.045 0.955 46 H 0.202 0.798 47 H 0.067 0.933 48 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 6.907 -12.949 20.755 25.419 hybrid contribution -0.491 0.890 -0.484 1.126 sum 6.416 -12.059 20.271 24.444 Atomic orbital electron populations 1.23138 0.75467 1.04988 1.02515 1.86211 1.24654 1.24047 1.86744 1.20430 0.90222 0.84975 0.89335 1.21285 0.91527 1.00268 1.08212 1.21688 1.01722 0.89667 0.88013 1.20784 0.95437 0.94392 1.13582 1.18044 0.86224 0.84380 0.75421 1.90752 1.15064 1.87468 1.52047 1.45958 1.10629 1.05437 1.74060 1.20900 0.95886 0.80103 0.97461 0.91148 1.21835 1.01595 0.97435 0.94806 1.21477 0.98268 0.93464 1.01770 1.21558 1.00024 0.99123 0.94502 1.21530 1.00402 0.94854 0.98104 1.21537 0.99066 0.95491 0.94890 0.89200 1.20771 0.90166 0.92894 0.92719 1.42634 1.47458 1.37081 1.12621 1.18996 1.16352 1.11467 0.89883 0.93246 1.25539 1.00020 1.02352 0.97580 1.69903 1.34476 1.42190 1.17051 0.85395 0.77145 0.79418 0.79770 1.20433 1.22348 1.16866 1.22897 0.91593 0.94430 0.88756 1.67356 1.40982 0.98988 1.20669 0.85618 0.92005 0.92635 0.80959 0.82006 0.75373 0.92240 0.90357 0.92333 0.90013 0.90840 0.90964 0.92371 0.92439 0.97212 0.95531 0.79777 0.93341 0.80323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.37 113.37 1.18 1.65 16 2 O -0.31 -5.93 10.46 -88.01 -0.92 -6.85 16 3 C 0.33 6.93 7.49 84.83 0.64 7.57 16 4 C -0.19 -3.45 10.02 22.43 0.22 -3.23 16 5 C 0.01 0.29 9.70 22.70 0.22 0.51 16 6 C -0.24 -5.27 5.89 -19.99 -0.12 -5.39 16 7 C 0.57 14.73 7.74 86.72 0.67 15.40 16 8 O -0.57 -18.26 16.08 -3.99 -0.06 -18.32 16 9 N -0.71 -16.16 4.26 -445.62 -1.90 -18.06 16 10 C 0.16 3.87 1.90 44.99 0.09 3.95 16 11 H 0.07 2.03 7.58 -2.39 -0.02 2.01 16 12 C -0.12 -2.30 5.49 30.60 0.17 -2.13 16 13 C -0.11 -1.96 5.92 30.59 0.18 -1.78 16 14 C -0.11 -2.14 5.92 30.60 0.18 -1.96 16 15 C -0.11 -2.81 5.08 30.61 0.16 -2.65 16 16 C -0.09 -2.39 1.80 -10.78 -0.02 -2.41 16 17 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 18 C 0.16 5.91 5.56 86.38 0.48 6.39 16 19 N -0.75 -34.00 5.13 -343.46 -1.76 -35.77 16 20 C -0.24 -13.46 10.47 84.03 0.88 -12.58 16 21 H 0.05 3.15 8.06 -2.91 -0.02 3.12 16 22 C -0.06 -3.73 5.50 84.86 0.47 -3.26 16 23 N -0.99 -63.38 13.97 21.65 0.30 -63.08 16 24 Si 0.96 44.44 27.74 68.60 1.90 46.34 16 25 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 26 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 27 H -0.24 -9.93 6.52 99.48 0.65 -9.29 16 28 C 0.18 3.78 10.71 85.03 0.91 4.69 16 29 N -0.56 -12.51 9.18 -307.81 -2.82 -15.34 16 30 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.06 0.87 8.10 -2.39 -0.02 0.85 16 32 H 0.05 0.88 8.10 -2.39 -0.02 0.86 16 33 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16 34 H 0.16 2.90 7.73 -2.91 -0.02 2.88 16 35 H 0.41 7.80 6.45 -92.70 -0.60 7.20 16 36 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.06 1.64 7.18 -2.39 -0.02 1.62 16 44 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 45 H 0.03 0.99 7.30 -2.38 -0.02 0.97 16 46 H 0.37 15.56 4.71 -92.70 -0.44 15.12 16 47 H 0.26 15.75 8.31 -92.70 -0.77 14.98 16 48 H 0.18 2.95 6.41 -2.91 -0.02 2.93 16 Total: -1.00 -74.81 386.54 0.92 -73.89 By element: Atomic # 1 Polarization: 32.53 SS G_CDS: -0.12 Total: 32.41 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: 6.30 Total: 4.78 kcal Atomic # 7 Polarization: -126.06 SS G_CDS: -6.18 Total: -132.24 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: -0.99 Total: -25.17 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 1.90 Total: 46.34 kcal Total: -74.81 0.92 -73.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322344980.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.046 kcal (2) G-P(sol) polarization free energy of solvation -74.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds