Wall clock time and date at job start Tue Mar 31 2020 17:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35501 * 117.00096 * 2 1 4 4 C 1.39164 * 119.52555 * 179.97438 * 3 2 1 5 5 C 1.37961 * 119.26130 * 179.71836 * 4 3 2 6 6 C 1.40279 * 118.35436 * 0.27959 * 5 4 3 7 7 C 1.47623 * 120.49351 * 180.02562 * 6 5 4 8 8 O 1.21583 * 120.00137 * 359.97438 * 7 6 5 9 9 N 1.34774 * 119.99623 * 180.02562 * 7 6 5 10 10 C 1.46502 * 119.99859 * 179.97438 * 9 7 6 11 11 H 1.09004 * 109.47411 * 325.00148 * 10 9 7 12 12 C 1.53000 * 109.46961 * 85.00311 * 10 9 7 13 13 C 1.52995 * 109.47153 * 59.99801 * 12 10 9 14 14 C 1.53002 * 109.47278 * 60.00451 * 13 12 10 15 15 C 1.53000 * 109.46660 * 299.99850 * 14 13 12 16 16 C 1.53001 * 109.47457 * 60.00170 * 15 14 13 17 17 H 1.09003 * 109.47405 * 59.99151 * 16 15 14 18 18 C 1.53000 * 109.47457 * 179.97438 * 16 15 14 19 19 N 1.46500 * 109.46954 * 294.99626 * 18 16 15 20 20 C 1.36931 * 119.99851 * 179.97438 * 19 18 16 21 21 H 1.07997 * 120.00251 * 0.02562 * 20 19 18 22 22 C 1.38820 * 119.99967 * 180.02562 * 20 19 18 23 23 N 1.31617 * 119.99972 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 119.99825 * 0.02562 * 22 20 19 25 25 H 1.48496 * 109.47205 * 89.99833 * 24 22 20 26 26 H 1.48504 * 109.46973 * 210.00145 * 24 22 20 27 27 H 1.48502 * 109.47319 * 329.99746 * 24 22 20 28 28 C 1.39519 * 119.00864 * 359.97438 * 6 5 4 29 29 N 1.31660 * 120.62738 * 0.02562 * 28 6 5 30 30 H 1.09006 * 109.46895 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47601 * 300.00576 * 1 2 3 32 32 H 1.09002 * 109.46688 * 60.00569 * 1 2 3 33 33 H 1.08002 * 120.37277 * 0.02562 * 4 3 2 34 34 H 1.07999 * 120.81690 * 180.25551 * 5 4 3 35 35 H 0.96998 * 120.00281 * 0.02562 * 9 7 6 36 36 H 1.09003 * 109.47506 * 180.02562 * 12 10 9 37 37 H 1.08998 * 109.46972 * 299.99990 * 12 10 9 38 38 H 1.09008 * 109.47154 * 179.97438 * 13 12 10 39 39 H 1.08994 * 109.47536 * 300.00076 * 13 12 10 40 40 H 1.09003 * 109.46884 * 59.99250 * 14 13 12 41 41 H 1.08991 * 109.47530 * 179.97438 * 14 13 12 42 42 H 1.08998 * 109.46972 * 179.97438 * 15 14 13 43 43 H 1.08995 * 109.47486 * 299.99688 * 15 14 13 44 44 H 1.08996 * 109.47131 * 54.99680 * 18 16 15 45 45 H 1.09003 * 109.46885 * 174.99579 * 18 16 15 46 46 H 0.96997 * 119.99698 * 0.02562 * 19 18 16 47 47 H 0.96997 * 119.99845 * 180.02562 * 23 22 20 48 48 H 1.08000 * 119.68944 * 180.02562 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2073 0.0000 4 6 3.4345 1.2686 0.0005 5 6 4.0552 2.5007 -0.0054 6 6 3.2524 3.6511 -0.0057 7 6 3.8669 4.9933 -0.0125 8 8 5.0773 5.1078 -0.0174 9 7 3.0860 6.0918 -0.0123 10 6 3.6958 7.4239 -0.0184 11 1 4.6149 7.4056 0.5672 12 6 4.0163 7.8314 -1.4579 13 6 2.7262 7.8572 -2.2800 14 6 1.7523 8.8668 -1.6691 15 6 1.4318 8.4593 -0.2296 16 6 2.7219 8.4335 0.5925 17 1 3.1756 9.4246 0.5878 18 6 2.4013 8.0267 2.0322 19 7 1.5650 9.0554 2.6556 20 6 1.1495 8.9070 3.9519 21 1 1.4386 8.0319 4.5148 22 6 0.3567 9.8816 4.5425 23 7 -0.0423 9.7392 5.7886 24 14 -0.1439 11.3949 3.5686 25 1 -1.4254 11.1303 2.8666 26 1 -0.3141 12.5446 4.4931 27 1 0.9099 11.7131 2.5718 28 6 1.8646 3.5077 -0.0007 29 7 1.3139 2.3118 0.0049 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 4.0211 0.3618 0.0005 34 1 5.1324 2.5775 -0.0092 35 1 2.1204 6.0005 -0.0073 36 1 4.4704 8.8223 -1.4626 37 1 4.7101 7.1122 -1.8932 38 1 2.9545 8.1479 -3.3054 39 1 2.2725 6.8662 -2.2754 40 1 2.2061 9.8579 -1.6737 41 1 0.8334 8.8855 -2.2549 42 1 0.7383 9.1788 0.2058 43 1 0.9781 7.4683 -0.2249 44 1 1.8677 7.0763 2.0309 45 1 3.3287 7.9219 2.5952 46 1 1.3051 9.8412 2.1498 47 1 -0.5966 10.4200 6.2012 48 1 1.2361 4.3860 -0.0013 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322344981.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:54 Heat of formation + Delta-G solvation = -34.743617 kcal Electronic energy + Delta-G solvation = -29052.685797 eV Core-core repulsion = 25107.870040 eV Total energy + Delta-G solvation = -3944.815757 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.17197 -40.21132 -38.59001 -37.66210 -34.87123 -33.87459 -32.83257 -32.01463 -31.46520 -30.11565 -29.55541 -27.63886 -25.54294 -24.52207 -23.63442 -22.80813 -22.17857 -21.27684 -20.65857 -19.13858 -18.84217 -18.16961 -17.55304 -17.31510 -16.38212 -15.73368 -15.41792 -15.23704 -15.03132 -14.67736 -14.55899 -14.33845 -14.15182 -13.91886 -13.59803 -13.52090 -13.39397 -13.11442 -12.88254 -12.80267 -12.31951 -12.20586 -12.13248 -11.82527 -11.64674 -11.50493 -11.11954 -11.01081 -10.83218 -10.52537 -10.35466 -10.29641 -10.27341 -10.06829 -9.94993 -9.78383 -9.58890 -9.09143 -8.90960 -8.80657 -7.24349 -5.77879 -3.13452 0.45299 0.87991 2.69818 2.73540 3.08437 3.35035 3.37034 3.43458 3.59420 3.85520 4.46035 4.54732 4.57286 4.63875 4.72161 4.75914 4.78832 4.82717 4.98407 5.01680 5.07782 5.19839 5.26187 5.30155 5.43713 5.47312 5.49413 5.53149 5.54630 5.62342 5.69497 5.75241 5.80098 5.95199 5.98527 6.04522 6.07319 6.13658 6.22444 6.33857 6.43120 6.48673 6.67449 6.73189 6.80432 7.39693 7.45335 7.98549 8.14465 8.41055 9.20183 9.92273 10.12056 11.40661 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010578 B = 0.003245 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2646.264087 B = 8625.391467 C =10043.907247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.305 6.305 3 C 0.340 3.660 4 C -0.198 4.198 5 C 0.017 3.983 6 C -0.224 4.224 7 C 0.569 3.431 8 O -0.540 6.540 9 N -0.711 5.711 10 C 0.157 3.843 11 H 0.092 0.908 12 C -0.128 4.128 13 C -0.116 4.116 14 C -0.122 4.122 15 C -0.113 4.113 16 C -0.107 4.107 17 H 0.087 0.913 18 C 0.164 3.836 19 N -0.754 5.754 20 C -0.244 4.244 21 H 0.089 0.911 22 C 0.004 3.996 23 N -0.934 5.934 24 Si 0.884 3.116 25 H -0.284 1.284 26 H -0.291 1.291 27 H -0.277 1.277 28 C 0.181 3.819 29 N -0.541 5.541 30 H 0.097 0.903 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.149 0.851 34 H 0.155 0.845 35 H 0.399 0.601 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.072 0.928 43 H 0.058 0.942 44 H 0.026 0.974 45 H 0.027 0.973 46 H 0.361 0.639 47 H 0.259 0.741 48 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.539 -14.724 -19.052 24.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.211 6.211 3 C 0.161 3.839 4 C -0.218 4.218 5 C -0.009 4.009 6 C -0.229 4.229 7 C 0.356 3.644 8 O -0.418 6.418 9 N -0.363 5.363 10 C 0.052 3.948 11 H 0.110 0.890 12 C -0.167 4.167 13 C -0.154 4.154 14 C -0.159 4.159 15 C -0.150 4.150 16 C -0.126 4.126 17 H 0.105 0.895 18 C 0.037 3.963 19 N -0.400 5.400 20 C -0.373 4.373 21 H 0.107 0.893 22 C -0.191 4.191 23 N -0.582 5.582 24 Si 0.714 3.286 25 H -0.211 1.211 26 H -0.217 1.217 27 H -0.203 1.203 28 C 0.024 3.976 29 N -0.265 5.265 30 H 0.116 0.884 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.166 0.834 34 H 0.173 0.827 35 H 0.236 0.764 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.091 0.909 43 H 0.076 0.924 44 H 0.044 0.956 45 H 0.045 0.955 46 H 0.194 0.806 47 H 0.069 0.931 48 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 4.557 -15.093 -18.806 24.541 hybrid contribution -0.408 1.290 -0.449 1.425 sum 4.150 -13.804 -19.255 24.053 Atomic orbital electron populations 1.22945 0.76669 1.03223 1.02937 1.86213 1.23425 1.24467 1.86971 1.20115 0.89525 0.84778 0.89462 1.21052 0.91817 0.99657 1.09309 1.21525 1.01308 0.89657 0.88376 1.20848 0.94970 0.95004 1.12126 1.17832 0.86633 0.83711 0.76227 1.90771 1.13713 1.86983 1.50363 1.46016 1.10146 1.05688 1.74450 1.20966 0.96958 0.80624 0.96256 0.88992 1.21909 0.97682 1.01928 0.95185 1.21492 0.95817 0.99504 0.98550 1.21595 0.98985 0.99118 0.96222 1.21559 0.97344 1.01847 0.94293 1.21701 0.95618 0.99150 0.96151 0.89521 1.20625 0.94200 0.92199 0.89322 1.42708 1.61748 1.22544 1.12998 1.19054 1.25184 1.05788 0.87322 0.89319 1.24673 1.00160 0.98330 0.95979 1.69701 1.40660 1.35751 1.12105 0.86560 0.78495 0.84051 0.79496 1.21077 1.21749 1.20321 1.22640 0.91636 0.93983 0.89386 1.67326 1.40509 0.98606 1.20025 0.88420 0.91803 0.92019 0.83364 0.82744 0.76416 0.90929 0.91523 0.92343 0.92209 0.91900 0.92135 0.90886 0.92354 0.95624 0.95509 0.80633 0.93066 0.82018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.37 101.05 1.05 1.33 16 2 O -0.30 -3.03 10.46 -18.20 -0.19 -3.22 16 3 C 0.34 3.68 7.49 -16.96 -0.13 3.55 16 4 C -0.20 -1.87 10.02 -39.34 -0.39 -2.26 16 5 C 0.02 0.17 9.70 -38.92 -0.38 -0.21 16 6 C -0.22 -2.52 5.89 -104.82 -0.62 -3.13 16 7 C 0.57 7.33 7.74 -12.43 -0.10 7.24 16 8 O -0.54 -8.51 16.08 5.29 0.09 -8.42 16 9 N -0.71 -8.26 3.57 -54.81 -0.20 -8.45 16 10 C 0.16 1.94 2.23 -67.93 -0.15 1.78 16 11 H 0.09 1.29 7.58 -51.93 -0.39 0.90 16 12 C -0.13 -1.37 5.60 -26.73 -0.15 -1.52 16 13 C -0.12 -1.11 5.76 -26.73 -0.15 -1.27 16 14 C -0.12 -1.25 5.92 -26.73 -0.16 -1.41 16 15 C -0.11 -1.41 4.91 -26.73 -0.13 -1.54 16 16 C -0.11 -1.48 2.02 -90.62 -0.18 -1.66 16 17 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 18 C 0.16 3.01 5.42 -4.04 -0.02 2.99 16 19 N -0.75 -17.30 5.13 -59.91 -0.31 -17.61 16 20 C -0.24 -6.84 10.47 -15.06 -0.16 -6.99 16 21 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 22 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 23 N -0.93 -29.31 13.97 55.49 0.78 -28.53 16 24 Si 0.88 21.79 27.74 -169.99 -4.71 17.07 16 25 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 26 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 27 H -0.28 -6.38 6.52 56.52 0.37 -6.01 16 28 C 0.18 1.92 10.71 -17.15 -0.18 1.74 16 29 N -0.54 -6.15 9.18 -12.97 -0.12 -6.27 16 30 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 32 H 0.06 0.45 8.10 -51.93 -0.42 0.03 16 33 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16 34 H 0.15 1.42 7.73 -52.49 -0.41 1.01 16 35 H 0.40 4.10 4.72 -40.82 -0.19 3.91 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 39 H 0.06 0.57 7.60 -51.93 -0.39 0.17 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.07 1.06 7.18 -51.93 -0.37 0.69 16 43 H 0.06 0.67 6.51 -51.93 -0.34 0.34 16 44 H 0.03 0.47 7.61 -51.93 -0.40 0.08 16 45 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.36 8.02 4.71 -40.82 -0.19 7.82 16 47 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 48 H 0.16 1.40 6.41 -52.49 -0.34 1.06 16 LS Contribution 382.43 15.07 5.76 5.76 Total: -1.00 -33.87 382.43 -8.11 -41.98 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -7.26 Total: 9.04 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: -1.95 Total: -1.34 kcal Atomic # 7 Polarization: -61.02 SS G_CDS: 0.15 Total: -60.87 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: -0.11 Total: -11.65 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.71 Total: 17.07 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.87 -8.11 -41.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322344981.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.239 kcal (2) G-P(sol) polarization free energy of solvation -33.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds