Wall clock time and date at job start Tue Mar 31 2020 17:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35501 * 117.00096 * 2 1 4 4 C 1.39164 * 119.52555 * 179.97438 * 3 2 1 5 5 C 1.37961 * 119.26130 * 179.71836 * 4 3 2 6 6 C 1.40279 * 118.35436 * 0.27959 * 5 4 3 7 7 C 1.47623 * 120.49351 * 180.02562 * 6 5 4 8 8 O 1.21583 * 120.00137 * 359.97438 * 7 6 5 9 9 N 1.34774 * 119.99623 * 180.02562 * 7 6 5 10 10 C 1.46502 * 119.99859 * 179.97438 * 9 7 6 11 11 H 1.09004 * 109.47411 * 325.00148 * 10 9 7 12 12 C 1.53000 * 109.46961 * 85.00311 * 10 9 7 13 13 C 1.52995 * 109.47153 * 59.99801 * 12 10 9 14 14 C 1.53002 * 109.47278 * 60.00451 * 13 12 10 15 15 C 1.53000 * 109.46660 * 299.99850 * 14 13 12 16 16 C 1.53001 * 109.47457 * 60.00170 * 15 14 13 17 17 H 1.09003 * 109.47405 * 59.99151 * 16 15 14 18 18 C 1.53000 * 109.47457 * 179.97438 * 16 15 14 19 19 N 1.46500 * 109.46954 * 294.99626 * 18 16 15 20 20 C 1.36931 * 119.99851 * 179.97438 * 19 18 16 21 21 H 1.07997 * 120.00251 * 0.02562 * 20 19 18 22 22 C 1.38820 * 119.99967 * 180.02562 * 20 19 18 23 23 N 1.31617 * 119.99972 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 119.99825 * 0.02562 * 22 20 19 25 25 H 1.48496 * 109.47205 * 89.99833 * 24 22 20 26 26 H 1.48504 * 109.46973 * 210.00145 * 24 22 20 27 27 H 1.48502 * 109.47319 * 329.99746 * 24 22 20 28 28 C 1.39519 * 119.00864 * 359.97438 * 6 5 4 29 29 N 1.31660 * 120.62738 * 0.02562 * 28 6 5 30 30 H 1.09006 * 109.46895 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47601 * 300.00576 * 1 2 3 32 32 H 1.09002 * 109.46688 * 60.00569 * 1 2 3 33 33 H 1.08002 * 120.37277 * 0.02562 * 4 3 2 34 34 H 1.07999 * 120.81690 * 180.25551 * 5 4 3 35 35 H 0.96998 * 120.00281 * 0.02562 * 9 7 6 36 36 H 1.09003 * 109.47506 * 180.02562 * 12 10 9 37 37 H 1.08998 * 109.46972 * 299.99990 * 12 10 9 38 38 H 1.09008 * 109.47154 * 179.97438 * 13 12 10 39 39 H 1.08994 * 109.47536 * 300.00076 * 13 12 10 40 40 H 1.09003 * 109.46884 * 59.99250 * 14 13 12 41 41 H 1.08991 * 109.47530 * 179.97438 * 14 13 12 42 42 H 1.08998 * 109.46972 * 179.97438 * 15 14 13 43 43 H 1.08995 * 109.47486 * 299.99688 * 15 14 13 44 44 H 1.08996 * 109.47131 * 54.99680 * 18 16 15 45 45 H 1.09003 * 109.46885 * 174.99579 * 18 16 15 46 46 H 0.96997 * 119.99698 * 0.02562 * 19 18 16 47 47 H 0.96997 * 119.99845 * 180.02562 * 23 22 20 48 48 H 1.08000 * 119.68944 * 180.02562 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2073 0.0000 4 6 3.4345 1.2686 0.0005 5 6 4.0552 2.5007 -0.0054 6 6 3.2524 3.6511 -0.0057 7 6 3.8669 4.9933 -0.0125 8 8 5.0773 5.1078 -0.0174 9 7 3.0860 6.0918 -0.0123 10 6 3.6958 7.4239 -0.0184 11 1 4.6149 7.4056 0.5672 12 6 4.0163 7.8314 -1.4579 13 6 2.7262 7.8572 -2.2800 14 6 1.7523 8.8668 -1.6691 15 6 1.4318 8.4593 -0.2296 16 6 2.7219 8.4335 0.5925 17 1 3.1756 9.4246 0.5878 18 6 2.4013 8.0267 2.0322 19 7 1.5650 9.0554 2.6556 20 6 1.1495 8.9070 3.9519 21 1 1.4386 8.0319 4.5148 22 6 0.3567 9.8816 4.5425 23 7 -0.0423 9.7392 5.7886 24 14 -0.1439 11.3949 3.5686 25 1 -1.4254 11.1303 2.8666 26 1 -0.3141 12.5446 4.4931 27 1 0.9099 11.7131 2.5718 28 6 1.8646 3.5077 -0.0007 29 7 1.3139 2.3118 0.0049 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 4.0211 0.3618 0.0005 34 1 5.1324 2.5775 -0.0092 35 1 2.1204 6.0005 -0.0073 36 1 4.4704 8.8223 -1.4626 37 1 4.7101 7.1122 -1.8932 38 1 2.9545 8.1479 -3.3054 39 1 2.2725 6.8662 -2.2754 40 1 2.2061 9.8579 -1.6737 41 1 0.8334 8.8855 -2.2549 42 1 0.7383 9.1788 0.2058 43 1 0.9781 7.4683 -0.2249 44 1 1.8677 7.0763 2.0309 45 1 3.3287 7.9219 2.5952 46 1 1.3051 9.8412 2.1498 47 1 -0.5966 10.4200 6.2012 48 1 1.2361 4.3860 -0.0013 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322344981.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:53 Heat of formation + Delta-G solvation = -58.387781 kcal Electronic energy + Delta-G solvation = -29053.711085 eV Core-core repulsion = 25107.870040 eV Total energy + Delta-G solvation = -3945.841045 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.03606 -41.16238 -39.53486 -38.56837 -36.60906 -34.84433 -33.86217 -33.65331 -32.34378 -31.61164 -30.53127 -28.32522 -27.08236 -25.39949 -24.44395 -24.36517 -23.25998 -22.29109 -21.94819 -20.12547 -19.82320 -19.55516 -18.88564 -18.16336 -17.12801 -16.80320 -16.60977 -16.43687 -16.06027 -15.97283 -15.64870 -15.42466 -15.14420 -15.08364 -14.84979 -14.63497 -14.39979 -14.26138 -14.06358 -13.91147 -13.77762 -13.13963 -13.03909 -12.91980 -12.79306 -12.72363 -12.57442 -12.22847 -12.11763 -11.92306 -11.84744 -11.42705 -11.30371 -11.19088 -11.10495 -11.03230 -10.88483 -10.70237 -10.08669 -9.64417 -9.29120 -8.02662 -5.36414 -0.39821 0.09300 1.37889 1.42278 1.49630 1.78383 1.98297 2.12636 2.48807 2.73189 3.08865 3.28706 3.43840 3.62423 3.74596 3.77465 3.83805 3.92685 3.96956 4.03344 4.23687 4.32585 4.42060 4.42739 4.46169 4.47914 4.55385 4.58301 4.64905 4.69676 4.73806 4.78504 4.90923 5.00326 5.02934 5.09285 5.18248 5.22472 5.27228 5.30505 5.35034 5.43886 5.50595 5.60938 5.75097 6.05474 6.20995 6.47173 6.59701 7.08290 7.15247 7.83507 8.04401 9.19153 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010578 B = 0.003245 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2646.264087 B = 8625.391467 C =10043.907247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.310 6.310 3 C 0.329 3.671 4 C -0.192 4.192 5 C 0.014 3.986 6 C -0.235 4.235 7 C 0.571 3.429 8 O -0.573 6.573 9 N -0.704 5.704 10 C 0.161 3.839 11 H 0.072 0.928 12 C -0.121 4.121 13 C -0.111 4.111 14 C -0.114 4.114 15 C -0.113 4.113 16 C -0.093 4.093 17 H 0.089 0.911 18 C 0.162 3.838 19 N -0.752 5.752 20 C -0.236 4.236 21 H 0.050 0.950 22 C -0.064 4.064 23 N -0.986 5.986 24 Si 0.957 3.043 25 H -0.273 1.273 26 H -0.298 1.298 27 H -0.249 1.249 28 C 0.180 3.820 29 N -0.555 5.555 30 H 0.125 0.875 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.173 0.827 34 H 0.162 0.838 35 H 0.406 0.594 36 H 0.081 0.919 37 H 0.059 0.941 38 H 0.074 0.926 39 H 0.062 0.938 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.056 0.944 43 H 0.067 0.933 44 H 0.027 0.973 45 H 0.009 0.991 46 H 0.368 0.632 47 H 0.258 0.742 48 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.184 -14.515 -21.960 26.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.217 6.217 3 C 0.150 3.850 4 C -0.213 4.213 5 C -0.011 4.011 6 C -0.241 4.241 7 C 0.358 3.642 8 O -0.454 6.454 9 N -0.356 5.356 10 C 0.056 3.944 11 H 0.090 0.910 12 C -0.160 4.160 13 C -0.148 4.148 14 C -0.152 4.152 15 C -0.150 4.150 16 C -0.112 4.112 17 H 0.107 0.893 18 C 0.036 3.964 19 N -0.399 5.399 20 C -0.367 4.367 21 H 0.068 0.932 22 C -0.256 4.256 23 N -0.636 5.636 24 Si 0.784 3.216 25 H -0.199 1.199 26 H -0.225 1.225 27 H -0.173 1.173 28 C 0.023 3.977 29 N -0.279 5.279 30 H 0.143 0.857 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.190 0.810 34 H 0.179 0.821 35 H 0.245 0.755 36 H 0.100 0.900 37 H 0.078 0.922 38 H 0.093 0.907 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.093 0.907 42 H 0.075 0.925 43 H 0.085 0.915 44 H 0.045 0.955 45 H 0.027 0.973 46 H 0.202 0.798 47 H 0.067 0.933 48 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 4.207 -14.906 -21.765 26.713 hybrid contribution -0.274 1.067 0.529 1.222 sum 3.933 -13.839 -21.236 25.650 Atomic orbital electron populations 1.23140 0.75461 1.04983 1.02532 1.86212 1.24662 1.24039 1.86748 1.20419 0.90201 0.84973 0.89368 1.21287 0.91556 1.00252 1.08164 1.21686 1.01714 0.89679 0.88034 1.20789 0.95425 0.94431 1.13481 1.18045 0.86232 0.84393 0.75487 1.90751 1.15081 1.87464 1.52102 1.45958 1.10478 1.05308 1.73887 1.20857 0.95638 0.80555 0.97319 0.91006 1.21847 0.98398 1.02135 0.93616 1.21466 0.94771 0.99571 0.99023 1.21543 0.99832 0.99342 0.94462 1.21563 0.95880 1.02054 0.95552 1.21548 0.96936 0.99516 0.93218 0.89271 1.20753 0.92498 0.91302 0.91859 1.42649 1.62051 1.23827 1.11339 1.19004 1.24350 1.04266 0.89077 0.93186 1.25548 1.00714 1.02188 0.97119 1.69899 1.42104 1.37187 1.14418 0.85383 0.79070 0.78933 0.78259 1.19933 1.22510 1.17296 1.22852 0.91564 0.94390 0.88928 1.67348 1.40945 0.98941 1.20620 0.85653 0.92592 0.91992 0.80993 0.82051 0.75526 0.90004 0.92199 0.90726 0.91949 0.91512 0.90710 0.92532 0.91474 0.95483 0.97301 0.79793 0.93338 0.80520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.37 113.37 1.18 1.63 16 2 O -0.31 -5.78 10.46 -88.03 -0.92 -6.71 16 3 C 0.33 6.77 7.49 84.83 0.64 7.41 16 4 C -0.19 -3.38 10.02 22.43 0.22 -3.16 16 5 C 0.01 0.28 9.70 22.70 0.22 0.50 16 6 C -0.24 -5.17 5.89 -19.99 -0.12 -5.29 16 7 C 0.57 14.51 7.74 86.72 0.67 15.18 16 8 O -0.57 -18.14 16.08 -3.98 -0.06 -18.20 16 9 N -0.70 -15.77 3.57 -445.60 -1.59 -17.36 16 10 C 0.16 3.83 2.23 44.99 0.10 3.93 16 11 H 0.07 2.03 7.58 -2.39 -0.02 2.01 16 12 C -0.12 -2.34 5.60 30.59 0.17 -2.17 16 13 C -0.11 -1.77 5.76 30.59 0.18 -1.59 16 14 C -0.11 -1.95 5.92 30.59 0.18 -1.77 16 15 C -0.11 -2.55 4.91 30.59 0.15 -2.40 16 16 C -0.09 -2.44 2.02 -10.79 -0.02 -2.46 16 17 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 18 C 0.16 5.94 5.42 86.38 0.47 6.41 16 19 N -0.75 -34.17 5.13 -343.45 -1.76 -35.94 16 20 C -0.24 -13.49 10.47 84.04 0.88 -12.61 16 21 H 0.05 3.18 8.06 -2.91 -0.02 3.16 16 22 C -0.06 -3.79 5.50 84.86 0.47 -3.32 16 23 N -0.99 -63.46 13.97 21.65 0.30 -63.16 16 24 Si 0.96 44.64 27.74 68.60 1.90 46.54 16 25 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 26 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 27 H -0.25 -10.31 6.52 99.48 0.65 -9.66 16 28 C 0.18 3.68 10.71 85.03 0.91 4.59 16 29 N -0.55 -12.13 9.18 -307.82 -2.82 -14.96 16 30 H 0.13 0.96 8.14 -2.38 -0.02 0.94 16 31 H 0.06 0.85 8.10 -2.39 -0.02 0.83 16 32 H 0.06 0.84 8.10 -2.39 -0.02 0.82 16 33 H 0.17 2.10 8.06 -2.91 -0.02 2.07 16 34 H 0.16 2.87 7.73 -2.91 -0.02 2.85 16 35 H 0.41 7.82 4.72 -92.71 -0.44 7.38 16 36 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.06 1.27 8.14 -2.39 -0.02 1.26 16 38 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 39 H 0.06 0.98 7.60 -2.39 -0.02 0.97 16 40 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.06 1.50 7.18 -2.39 -0.02 1.48 16 43 H 0.07 1.38 6.51 -2.39 -0.02 1.37 16 44 H 0.03 0.99 7.61 -2.39 -0.02 0.98 16 45 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 46 H 0.37 15.65 4.71 -92.71 -0.44 15.21 16 47 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 48 H 0.18 2.85 6.41 -2.91 -0.02 2.83 16 Total: -1.00 -74.57 382.43 1.38 -73.18 By element: Atomic # 1 Polarization: 31.66 SS G_CDS: 0.05 Total: 31.71 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: 6.29 Total: 4.88 kcal Atomic # 7 Polarization: -125.54 SS G_CDS: -5.88 Total: -131.42 kcal Atomic # 8 Polarization: -23.92 SS G_CDS: -0.99 Total: -24.91 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.90 Total: 46.54 kcal Total: -74.57 1.38 -73.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322344981.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.796 kcal (2) G-P(sol) polarization free energy of solvation -74.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds