Wall clock time and date at job start Tue Mar 31 2020 17:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35502 * 117.00124 * 2 1 4 4 C 1.39166 * 119.52254 * 180.02562 * 3 2 1 5 5 C 1.37956 * 119.26138 * 180.02562 * 4 3 2 6 6 C 1.40288 * 118.35615 * 359.97438 * 5 4 3 7 7 C 1.47620 * 120.49720 * 179.97438 * 6 5 4 8 8 O 1.21578 * 120.00120 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99762 * 179.97438 * 7 6 5 10 10 C 1.46500 * 119.99793 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.47092 * 325.00176 * 10 9 7 12 12 C 1.53005 * 109.47094 * 84.99912 * 10 9 7 13 13 C 1.52999 * 109.47159 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47317 * 300.00546 * 13 12 10 15 15 C 1.53000 * 109.47060 * 59.99960 * 14 13 12 16 16 C 1.52997 * 109.47007 * 205.00228 * 10 9 7 17 17 H 1.09002 * 109.46695 * 299.99637 * 16 10 9 18 18 C 1.52997 * 109.47232 * 59.99903 * 16 10 9 19 19 N 1.46501 * 109.46866 * 184.99942 * 18 16 10 20 20 C 1.36939 * 119.99364 * 180.02562 * 19 18 16 21 21 H 1.07993 * 120.00666 * 0.02562 * 20 19 18 22 22 C 1.38820 * 119.99537 * 179.97438 * 20 19 18 23 23 N 1.31619 * 119.99956 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99853 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46555 * 90.00238 * 24 22 20 26 26 H 1.48500 * 109.47101 * 210.00252 * 24 22 20 27 27 H 1.48497 * 109.47033 * 330.00576 * 24 22 20 28 28 C 1.39521 * 119.00235 * 0.25189 * 6 5 4 29 29 N 1.31668 * 120.62836 * 359.47829 * 28 6 5 30 30 H 1.08994 * 109.46952 * 60.00089 * 1 2 3 31 31 H 1.08996 * 109.47200 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46707 * 299.99790 * 1 2 3 33 33 H 1.08002 * 120.37464 * 359.97438 * 4 3 2 34 34 H 1.07995 * 120.82265 * 180.02562 * 5 4 3 35 35 H 0.97004 * 119.99983 * 0.02562 * 9 7 6 36 36 H 1.09000 * 109.47360 * 300.00194 * 12 10 9 37 37 H 1.09002 * 109.46935 * 60.00169 * 12 10 9 38 38 H 1.08996 * 109.46929 * 179.97438 * 13 12 10 39 39 H 1.09002 * 109.46716 * 60.00455 * 13 12 10 40 40 H 1.09002 * 109.47153 * 299.99641 * 14 13 12 41 41 H 1.09001 * 109.46832 * 179.97438 * 14 13 12 42 42 H 1.08992 * 109.47399 * 59.99823 * 15 14 13 43 43 H 1.09004 * 109.46724 * 180.02562 * 15 14 13 44 44 H 1.09002 * 109.47223 * 304.99821 * 18 16 10 45 45 H 1.09001 * 109.46547 * 65.00156 * 18 16 10 46 46 H 0.96998 * 120.00018 * 0.02562 * 19 18 16 47 47 H 0.96992 * 119.99693 * 179.97438 * 23 22 20 48 48 H 1.08007 * 119.68458 * 179.72409 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2073 0.0000 4 6 3.4345 1.2685 -0.0005 5 6 4.0552 2.5006 0.0000 6 6 3.2525 3.6511 0.0005 7 6 3.8670 4.9933 0.0017 8 8 5.0774 5.1078 0.0017 9 7 3.0862 6.0919 0.0017 10 6 3.6960 7.4239 0.0023 11 1 4.6125 7.4037 0.5920 12 6 4.0232 7.8357 -1.4346 13 6 4.6595 9.2271 -1.4340 14 6 3.6825 10.2345 -0.8247 15 6 3.3554 9.8227 0.6121 16 6 2.7194 8.4316 0.6118 17 1 1.8030 8.4518 0.0219 18 6 2.3922 8.0199 2.0485 19 7 1.3676 8.9150 2.5917 20 6 0.9134 8.7389 3.8716 21 1 1.3108 7.9405 4.4806 22 6 -0.0571 9.5874 4.3865 23 7 -0.5411 10.5608 3.6445 24 14 -0.6772 9.3468 6.1321 25 1 0.1591 10.1402 7.0682 26 1 -2.0883 9.8003 6.2231 27 1 -0.5953 7.9086 6.4927 28 6 1.8647 3.5076 0.0059 29 7 1.3139 2.3117 0.0000 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 4.0211 0.3617 -0.0005 34 1 5.1324 2.5775 -0.0008 35 1 2.1205 6.0005 0.0013 36 1 4.7190 7.1177 -1.8688 37 1 3.1067 7.8559 -2.0243 38 1 4.8930 9.5202 -2.4576 39 1 5.5759 9.2072 -0.8442 40 1 2.7661 10.2544 -1.4145 41 1 4.1360 11.2257 -0.8239 42 1 4.2717 9.8029 1.2020 43 1 2.6589 10.5402 1.0461 44 1 2.0210 6.9950 2.0572 45 1 3.2928 8.0854 2.6592 46 1 1.0109 9.6323 2.0449 47 1 -1.2195 11.1534 4.0042 48 1 1.2362 4.3860 0.0108 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322344982.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:56 Heat of formation + Delta-G solvation = -64.392405 kcal Electronic energy + Delta-G solvation = -28666.919648 eV Core-core repulsion = 24720.818222 eV Total energy + Delta-G solvation = -3946.101425 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.99047 -41.01658 -39.52605 -38.58222 -36.41431 -35.33647 -33.69711 -33.64417 -32.33248 -31.20928 -30.20775 -28.29805 -26.94363 -25.40800 -24.71633 -24.44670 -23.16582 -21.98782 -21.62837 -20.89602 -19.62103 -19.31378 -18.58865 -18.29837 -17.12515 -17.01326 -16.72852 -16.18577 -16.06539 -15.74375 -15.52002 -15.34474 -15.24886 -15.06504 -14.78507 -14.62806 -14.36385 -14.30180 -14.01187 -13.90920 -13.58801 -13.30922 -12.94965 -12.79618 -12.74175 -12.66532 -12.24854 -12.18533 -12.08793 -11.91668 -11.84849 -11.58018 -11.36971 -11.20104 -11.10504 -11.06742 -10.90779 -10.67508 -10.08267 -9.64618 -8.97643 -7.94845 -5.22552 -0.40033 0.09434 1.46977 1.47915 1.56232 1.77296 1.97841 2.09829 2.55598 2.72842 3.09520 3.38709 3.54192 3.63459 3.74941 3.79739 3.91973 3.97238 4.03097 4.11918 4.28060 4.40300 4.41894 4.42605 4.46995 4.51211 4.54230 4.56149 4.59279 4.67062 4.78345 4.87000 4.90433 5.00652 5.06463 5.14190 5.17748 5.22476 5.26497 5.31900 5.33051 5.45564 5.48528 5.51209 5.62205 6.05241 6.27775 6.46904 6.60009 7.13856 7.35052 8.10444 8.35273 9.28327 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.008069 B = 0.003461 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3469.057401 B = 8087.231372 C =10885.344895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.310 6.310 3 C 0.329 3.671 4 C -0.192 4.192 5 C 0.015 3.985 6 C -0.235 4.235 7 C 0.571 3.429 8 O -0.573 6.573 9 N -0.710 5.710 10 C 0.163 3.837 11 H 0.071 0.929 12 C -0.118 4.118 13 C -0.110 4.110 14 C -0.114 4.114 15 C -0.105 4.105 16 C -0.086 4.086 17 H 0.081 0.919 18 C 0.159 3.841 19 N -0.738 5.738 20 C -0.245 4.245 21 H 0.069 0.931 22 C -0.069 4.069 23 N -0.965 5.965 24 Si 0.968 3.032 25 H -0.289 1.289 26 H -0.293 1.293 27 H -0.272 1.272 28 C 0.181 3.819 29 N -0.556 5.556 30 H 0.060 0.940 31 H 0.126 0.874 32 H 0.055 0.945 33 H 0.174 0.826 34 H 0.163 0.837 35 H 0.408 0.592 36 H 0.061 0.939 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.059 0.941 40 H 0.067 0.933 41 H 0.071 0.929 42 H 0.055 0.945 43 H 0.050 0.950 44 H 0.023 0.977 45 H 0.005 0.995 46 H 0.377 0.623 47 H 0.252 0.748 48 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.143 -16.520 -14.268 22.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.216 6.216 3 C 0.150 3.850 4 C -0.212 4.212 5 C -0.010 4.010 6 C -0.241 4.241 7 C 0.359 3.641 8 O -0.453 6.453 9 N -0.360 5.360 10 C 0.058 3.942 11 H 0.089 0.911 12 C -0.157 4.157 13 C -0.148 4.148 14 C -0.151 4.151 15 C -0.143 4.143 16 C -0.105 4.105 17 H 0.099 0.901 18 C 0.032 3.968 19 N -0.382 5.382 20 C -0.377 4.377 21 H 0.087 0.913 22 C -0.262 4.262 23 N -0.616 5.616 24 Si 0.797 3.203 25 H -0.216 1.216 26 H -0.219 1.219 27 H -0.197 1.197 28 C 0.023 3.977 29 N -0.280 5.280 30 H 0.079 0.921 31 H 0.144 0.856 32 H 0.074 0.926 33 H 0.191 0.809 34 H 0.180 0.820 35 H 0.245 0.755 36 H 0.080 0.920 37 H 0.094 0.906 38 H 0.101 0.899 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.090 0.910 42 H 0.073 0.927 43 H 0.069 0.931 44 H 0.041 0.959 45 H 0.023 0.977 46 H 0.210 0.790 47 H 0.060 0.940 48 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 7.163 -16.904 -14.103 23.151 hybrid contribution -0.532 0.583 1.155 1.399 sum 6.631 -16.321 -12.948 21.863 Atomic orbital electron populations 1.23136 0.75479 1.04983 1.02514 1.86211 1.24641 1.24025 1.86754 1.20428 0.90223 0.84962 0.89338 1.21287 0.91513 1.00251 1.08176 1.21689 1.01724 0.89625 0.87998 1.20774 0.95418 0.94344 1.13579 1.18057 0.86223 0.84360 0.75442 1.90747 1.15032 1.87467 1.52096 1.45966 1.10611 1.05443 1.73990 1.20888 0.95821 0.80143 0.97363 0.91085 1.21837 1.01515 0.97425 0.94926 1.21469 0.98181 0.93418 1.01761 1.21543 0.99877 0.99124 0.94604 1.21427 0.99990 0.95065 0.97842 1.21433 0.98578 0.95267 0.95209 0.90116 1.20778 0.90380 0.92974 0.92629 1.42501 1.46060 1.36388 1.13223 1.19563 1.16040 1.10924 0.91206 0.91312 1.25460 1.00484 0.98289 1.01939 1.69790 1.33115 1.20946 1.37723 0.85230 0.77003 0.77730 0.80343 1.21602 1.21945 1.19749 1.22877 0.91604 0.94407 0.88791 1.67354 1.40979 0.98961 1.20675 0.92088 0.85610 0.92571 0.80903 0.81968 0.75457 0.92017 0.90624 0.89941 0.92185 0.91383 0.91047 0.92662 0.93074 0.95886 0.97700 0.79040 0.93963 0.80492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.37 113.37 1.18 1.64 16 2 O -0.31 -5.84 10.46 -88.04 -0.92 -6.76 16 3 C 0.33 6.87 7.49 84.83 0.64 7.50 16 4 C -0.19 -3.39 10.02 22.43 0.22 -3.17 16 5 C 0.02 0.30 9.70 22.70 0.22 0.52 16 6 C -0.24 -5.31 5.89 -19.99 -0.12 -5.42 16 7 C 0.57 15.10 7.74 86.72 0.67 15.77 16 8 O -0.57 -18.55 16.08 -3.96 -0.06 -18.61 16 9 N -0.71 -17.17 4.26 -445.61 -1.90 -19.07 16 10 C 0.16 4.24 1.90 44.99 0.09 4.33 16 11 H 0.07 2.16 7.58 -2.39 -0.02 2.14 16 12 C -0.12 -2.57 5.50 30.60 0.17 -2.41 16 13 C -0.11 -2.21 5.92 30.59 0.18 -2.02 16 14 C -0.11 -2.57 5.92 30.59 0.18 -2.38 16 15 C -0.10 -3.12 5.08 30.58 0.16 -2.96 16 16 C -0.09 -2.56 1.80 -10.81 -0.02 -2.58 16 17 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 18 C 0.16 6.22 5.57 86.38 0.48 6.70 16 19 N -0.74 -36.61 5.33 -343.45 -1.83 -38.44 16 20 C -0.25 -13.66 9.99 84.04 0.84 -12.82 16 21 H 0.07 3.75 7.83 -2.91 -0.02 3.73 16 22 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 23 N -0.97 -58.10 13.06 21.65 0.28 -57.82 16 24 Si 0.97 46.05 29.55 68.60 2.03 48.08 16 25 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 26 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 27 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 28 C 0.18 3.84 10.71 85.03 0.91 4.75 16 29 N -0.56 -12.50 9.18 -307.82 -2.82 -15.32 16 30 H 0.06 0.86 8.10 -2.39 -0.02 0.84 16 31 H 0.13 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.06 0.86 8.10 -2.38 -0.02 0.84 16 33 H 0.17 2.09 8.06 -2.91 -0.02 2.07 16 34 H 0.16 2.89 7.73 -2.91 -0.02 2.87 16 35 H 0.41 8.52 6.45 -92.71 -0.60 7.92 16 36 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.05 1.82 7.18 -2.39 -0.02 1.80 16 44 H 0.02 0.89 7.30 -2.39 -0.02 0.87 16 45 H 0.01 0.21 8.14 -2.39 -0.02 0.19 16 46 H 0.38 19.61 6.85 -92.71 -0.63 18.98 16 47 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 48 H 0.18 3.07 6.41 -2.91 -0.02 3.05 16 Total: -1.00 -69.98 389.64 0.78 -69.20 By element: Atomic # 1 Polarization: 35.04 SS G_CDS: -0.26 Total: 34.78 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: 6.26 Total: 3.97 kcal Atomic # 7 Polarization: -124.38 SS G_CDS: -6.27 Total: -130.65 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: -0.98 Total: -25.37 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -69.98 0.78 -69.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322344982.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.807 kcal (2) G-P(sol) polarization free energy of solvation -69.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds