Wall clock time and date at job start Tue Mar 31 2020 17:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35497 * 116.99977 * 2 1 4 4 C 1.39175 * 119.52340 * 180.02562 * 3 2 1 5 5 C 1.37953 * 119.25945 * 180.02562 * 4 3 2 6 6 C 1.40277 * 118.36051 * 359.97438 * 5 4 3 7 7 C 1.47623 * 120.49928 * 180.02562 * 6 5 4 8 8 O 1.21583 * 119.99628 * 359.97438 * 7 6 5 9 9 N 1.34769 * 120.00073 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00272 * 180.02562 * 9 7 6 11 11 H 1.08995 * 109.46912 * 34.99759 * 10 9 7 12 12 C 1.53010 * 109.46909 * 275.00571 * 10 9 7 13 13 C 1.52996 * 109.46771 * 299.99236 * 12 10 9 14 14 C 1.53001 * 109.47719 * 300.00378 * 13 12 10 15 15 C 1.53001 * 109.46760 * 59.99965 * 14 13 12 16 16 C 1.52995 * 109.47510 * 155.00252 * 10 9 7 17 17 H 1.09004 * 109.47237 * 180.02562 * 16 10 9 18 18 C 1.52998 * 109.47057 * 299.99897 * 16 10 9 19 19 N 1.46503 * 109.47107 * 184.99791 * 18 16 10 20 20 C 1.36940 * 119.99649 * 180.02562 * 19 18 16 21 21 H 1.07993 * 120.00101 * 0.02562 * 20 19 18 22 22 C 1.38811 * 119.99366 * 180.02562 * 20 19 18 23 23 N 1.31627 * 119.99630 * 180.02562 * 22 20 19 24 24 Si 1.86793 * 120.00371 * 0.02562 * 22 20 19 25 25 H 1.48504 * 109.47298 * 90.00154 * 24 22 20 26 26 H 1.48504 * 109.47365 * 209.99791 * 24 22 20 27 27 H 1.48499 * 109.47161 * 330.00006 * 24 22 20 28 28 C 1.39525 * 119.00574 * 0.02562 * 6 5 4 29 29 N 1.31669 * 120.62565 * 359.97438 * 28 6 5 30 30 H 1.08994 * 109.47469 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46847 * 300.00011 * 1 2 3 32 32 H 1.08998 * 109.47420 * 59.99659 * 1 2 3 33 33 H 1.07999 * 120.37087 * 359.71912 * 4 3 2 34 34 H 1.08001 * 120.81754 * 179.97438 * 5 4 3 35 35 H 0.97006 * 120.00328 * 0.02562 * 9 7 6 36 36 H 1.08992 * 109.47109 * 59.99776 * 12 10 9 37 37 H 1.08999 * 109.46888 * 180.02562 * 12 10 9 38 38 H 1.08999 * 109.47438 * 180.02562 * 13 12 10 39 39 H 1.09004 * 109.47030 * 60.00504 * 13 12 10 40 40 H 1.08995 * 109.46747 * 300.00267 * 14 13 12 41 41 H 1.09000 * 109.47370 * 180.02562 * 14 13 12 42 42 H 1.09003 * 109.46745 * 180.02562 * 15 14 13 43 43 H 1.08995 * 109.47244 * 60.00607 * 15 14 13 44 44 H 1.08997 * 109.47358 * 305.00440 * 18 16 10 45 45 H 1.09004 * 109.46730 * 65.00073 * 18 16 10 46 46 H 0.96997 * 119.99990 * 0.02562 * 19 18 16 47 47 H 0.97007 * 119.99843 * 180.02562 * 23 22 20 48 48 H 1.08001 * 119.68833 * 179.97438 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2073 0.0000 4 6 3.4345 1.2686 -0.0005 5 6 4.0552 2.5006 0.0000 6 6 3.2525 3.6510 0.0005 7 6 3.8669 4.9933 0.0006 8 8 5.0774 5.1077 0.0006 9 7 3.0862 6.0918 0.0005 10 6 3.6960 7.4239 0.0000 11 1 4.6124 7.4037 -0.5897 12 6 4.0232 7.8356 1.4369 13 6 2.7368 7.8640 2.2647 14 6 1.7601 8.8717 1.6552 15 6 1.4330 8.4599 0.2184 16 6 2.7194 8.4317 -0.6095 17 1 3.1732 9.4227 -0.6103 18 6 2.3922 8.0200 -2.0462 19 7 1.5529 9.0464 -2.6693 20 6 1.1315 8.8936 -3.9632 21 1 1.4176 8.0163 -4.5242 22 6 0.3366 9.8665 -4.5537 23 7 -0.0689 9.7194 -5.7972 24 14 -0.1576 11.3843 -3.5835 25 1 0.8587 12.4493 -3.7789 26 1 -1.4787 11.8675 -4.0593 27 1 -0.2457 11.0427 -2.1410 28 6 1.8646 3.5077 0.0010 29 7 1.3138 2.3117 0.0005 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 4.0211 0.3617 0.0036 34 1 5.1324 2.5775 0.0000 35 1 2.1205 6.0006 0.0009 36 1 4.7189 7.1177 1.8710 37 1 4.4764 8.8269 1.4365 38 1 2.9697 8.1577 3.2882 39 1 2.2830 6.8729 2.2651 40 1 2.2138 9.8627 1.6548 41 1 0.8438 8.8922 2.2453 42 1 0.7375 9.1781 -0.2159 43 1 0.9792 7.4689 0.2188 44 1 3.3170 7.9134 -2.6132 45 1 1.8588 7.0694 -2.0393 46 1 1.2956 9.8342 -2.1652 47 1 -0.6240 10.3994 -6.2100 48 1 1.2361 4.3860 0.0019 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322344983.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:59 Heat of formation + Delta-G solvation = -58.426812 kcal Electronic energy + Delta-G solvation = -29055.805228 eV Core-core repulsion = 25109.962490 eV Total energy + Delta-G solvation = -3945.842738 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.03647 -41.16315 -39.53548 -38.56879 -36.60797 -34.84445 -33.86065 -33.65402 -32.34410 -31.60993 -30.53171 -28.32655 -27.08253 -25.40023 -24.44452 -24.36548 -23.26047 -22.29051 -21.94594 -20.12347 -19.82530 -19.55634 -18.88567 -18.16447 -17.12910 -16.80520 -16.60780 -16.43336 -16.06194 -15.97256 -15.65117 -15.42479 -15.14318 -15.08433 -14.85055 -14.62734 -14.40282 -14.26106 -14.06891 -13.91187 -13.78156 -13.13960 -13.04617 -12.91496 -12.79423 -12.72413 -12.55285 -12.22847 -12.14494 -11.89302 -11.84452 -11.42833 -11.30144 -11.20447 -11.10552 -11.03300 -10.88207 -10.70272 -10.08604 -9.64453 -9.28972 -8.02601 -5.36405 -0.39870 0.09244 1.37766 1.42538 1.49809 1.78401 1.98230 2.12677 2.48952 2.73135 3.08776 3.28843 3.43944 3.62380 3.74560 3.77489 3.83711 3.92709 3.97025 4.03275 4.23734 4.32579 4.41967 4.42708 4.46139 4.47904 4.55348 4.58332 4.64889 4.69670 4.73782 4.78459 4.90960 5.00300 5.03023 5.09300 5.18317 5.22429 5.27157 5.30444 5.35011 5.43944 5.50532 5.60913 5.75154 6.05401 6.21031 6.47127 6.59611 7.08360 7.15223 7.83535 8.04460 9.19172 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010567 B = 0.003248 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2649.027905 B = 8618.234811 C =10042.801229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.310 6.310 3 C 0.329 3.671 4 C -0.192 4.192 5 C 0.014 3.986 6 C -0.235 4.235 7 C 0.571 3.429 8 O -0.573 6.573 9 N -0.704 5.704 10 C 0.161 3.839 11 H 0.072 0.928 12 C -0.121 4.121 13 C -0.111 4.111 14 C -0.114 4.114 15 C -0.112 4.112 16 C -0.093 4.093 17 H 0.090 0.910 18 C 0.162 3.838 19 N -0.752 5.752 20 C -0.236 4.236 21 H 0.050 0.950 22 C -0.065 4.065 23 N -0.986 5.986 24 Si 0.957 3.043 25 H -0.280 1.280 26 H -0.297 1.297 27 H -0.244 1.244 28 C 0.180 3.820 29 N -0.555 5.555 30 H 0.125 0.875 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.173 0.827 34 H 0.162 0.838 35 H 0.406 0.594 36 H 0.059 0.941 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.061 0.939 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.055 0.945 43 H 0.066 0.934 44 H 0.010 0.990 45 H 0.026 0.974 46 H 0.368 0.632 47 H 0.258 0.742 48 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.288 -14.456 21.994 26.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.217 6.217 3 C 0.150 3.850 4 C -0.213 4.213 5 C -0.011 4.011 6 C -0.241 4.241 7 C 0.358 3.642 8 O -0.454 6.454 9 N -0.356 5.356 10 C 0.056 3.944 11 H 0.090 0.910 12 C -0.160 4.160 13 C -0.148 4.148 14 C -0.152 4.152 15 C -0.150 4.150 16 C -0.112 4.112 17 H 0.109 0.891 18 C 0.036 3.964 19 N -0.399 5.399 20 C -0.367 4.367 21 H 0.068 0.932 22 C -0.256 4.256 23 N -0.636 5.636 24 Si 0.784 3.216 25 H -0.206 1.206 26 H -0.223 1.223 27 H -0.168 1.168 28 C 0.023 3.977 29 N -0.279 5.279 30 H 0.144 0.856 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.190 0.810 34 H 0.180 0.820 35 H 0.245 0.755 36 H 0.078 0.922 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.092 0.908 42 H 0.074 0.926 43 H 0.085 0.915 44 H 0.028 0.972 45 H 0.044 0.956 46 H 0.202 0.798 47 H 0.067 0.933 48 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 4.304 -14.852 21.805 26.731 hybrid contribution -0.283 1.068 -0.539 1.230 sum 4.021 -13.784 21.265 25.659 Atomic orbital electron populations 1.23137 0.75463 1.04984 1.02530 1.86211 1.24660 1.24039 1.86746 1.20420 0.90204 0.84971 0.89367 1.21288 0.91550 1.00256 1.08161 1.21684 1.01719 0.89675 0.88035 1.20790 0.95419 0.94441 1.13473 1.18042 0.86234 0.84388 0.75492 1.90751 1.15071 1.87464 1.52101 1.45961 1.10473 1.05323 1.73884 1.20858 0.95621 0.80548 0.97349 0.90964 1.21849 0.98378 1.02143 0.93621 1.21466 0.94801 0.99556 0.99007 1.21541 0.99783 0.99365 0.94476 1.21559 0.95926 1.01979 0.95552 1.21550 0.96877 0.99583 0.93210 0.89142 1.20755 0.92475 0.91305 0.91882 1.42648 1.61722 1.23922 1.11573 1.19002 1.24378 1.04205 0.89094 0.93199 1.25551 1.00656 1.02246 0.97145 1.69907 1.41987 1.37163 1.14571 0.85384 0.77086 0.79495 0.79663 1.20585 1.22342 1.16777 1.22854 0.91567 0.94384 0.88939 1.67347 1.40946 0.98943 1.20630 0.85650 0.92000 0.92592 0.80985 0.82042 0.75542 0.92187 0.89958 0.90718 0.91982 0.91473 0.90782 0.92638 0.91548 0.97213 0.95579 0.79783 0.93349 0.80540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.37 113.37 1.18 1.63 16 2 O -0.31 -5.79 10.46 -87.98 -0.92 -6.71 16 3 C 0.33 6.78 7.49 84.83 0.64 7.42 16 4 C -0.19 -3.38 10.02 22.43 0.22 -3.16 16 5 C 0.01 0.28 9.70 22.70 0.22 0.50 16 6 C -0.24 -5.17 5.89 -19.99 -0.12 -5.29 16 7 C 0.57 14.51 7.74 86.72 0.67 15.18 16 8 O -0.57 -18.12 16.08 -3.98 -0.06 -18.18 16 9 N -0.70 -15.78 3.57 -445.62 -1.59 -17.38 16 10 C 0.16 3.81 2.23 44.99 0.10 3.91 16 11 H 0.07 2.03 7.58 -2.39 -0.02 2.01 16 12 C -0.12 -2.33 5.60 30.60 0.17 -2.16 16 13 C -0.11 -1.77 5.76 30.59 0.18 -1.59 16 14 C -0.11 -1.96 5.92 30.59 0.18 -1.78 16 15 C -0.11 -2.56 4.90 30.59 0.15 -2.41 16 16 C -0.09 -2.43 2.02 -10.80 -0.02 -2.46 16 17 H 0.09 2.35 8.14 -2.38 -0.02 2.33 16 18 C 0.16 5.93 5.42 86.38 0.47 6.40 16 19 N -0.75 -34.13 5.13 -343.45 -1.76 -35.90 16 20 C -0.24 -13.48 10.47 84.03 0.88 -12.60 16 21 H 0.05 3.18 8.06 -2.91 -0.02 3.15 16 22 C -0.06 -3.81 5.50 84.86 0.47 -3.34 16 23 N -0.99 -63.50 13.97 21.65 0.30 -63.19 16 24 Si 0.96 44.62 27.74 68.60 1.90 46.53 16 25 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 26 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 27 H -0.24 -9.91 6.52 99.48 0.65 -9.26 16 28 C 0.18 3.68 10.71 85.03 0.91 4.59 16 29 N -0.55 -12.15 9.18 -307.81 -2.82 -14.98 16 30 H 0.13 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.06 0.84 8.10 -2.39 -0.02 0.82 16 32 H 0.06 0.85 8.10 -2.39 -0.02 0.83 16 33 H 0.17 2.10 8.06 -2.91 -0.02 2.07 16 34 H 0.16 2.87 7.73 -2.91 -0.02 2.85 16 35 H 0.41 7.84 4.72 -92.70 -0.44 7.41 16 36 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.06 0.98 7.60 -2.38 -0.02 0.96 16 40 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.05 1.50 7.18 -2.39 -0.02 1.48 16 43 H 0.07 1.39 6.51 -2.39 -0.02 1.37 16 44 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 45 H 0.03 0.96 7.61 -2.38 -0.02 0.94 16 46 H 0.37 15.62 4.71 -92.71 -0.44 15.18 16 47 H 0.26 15.78 8.31 -92.70 -0.77 15.01 16 48 H 0.18 2.86 6.41 -2.91 -0.02 2.84 16 Total: -1.00 -74.56 382.42 1.38 -73.18 By element: Atomic # 1 Polarization: 31.72 SS G_CDS: 0.05 Total: 31.77 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: 6.29 Total: 4.86 kcal Atomic # 7 Polarization: -125.57 SS G_CDS: -5.88 Total: -131.44 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: -0.98 Total: -24.89 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 1.90 Total: 46.53 kcal Total: -74.56 1.38 -73.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322344983.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.752 kcal (2) G-P(sol) polarization free energy of solvation -74.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds