Wall clock time and date at job start Tue Mar 31 2020 17:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35899 * 117.00172 * 2 1 4 4 C 1.38818 * 120.01348 * 359.97438 * 3 2 1 5 5 C 1.38179 * 120.08941 * 180.02562 * 4 3 2 6 6 C 1.38153 * 120.12878 * 359.73491 * 5 4 3 7 7 C 1.38932 * 120.03500 * 0.51663 * 6 5 4 8 8 N 1.39671 * 120.04710 * 179.76627 * 7 6 5 9 9 C 1.46929 * 110.98629 * 123.95195 * 8 7 6 10 10 C 1.53037 * 109.47910 * 174.18170 * 9 8 7 11 11 C 1.53114 * 109.31211 * 59.15772 * 10 9 8 12 12 N 1.46502 * 109.52513 * 182.42206 * 11 10 9 13 13 C 1.34771 * 120.00016 * 204.99737 * 12 11 10 14 14 O 1.21584 * 120.00481 * 0.02562 * 13 12 11 15 15 N 1.34777 * 119.99866 * 179.97438 * 13 12 11 16 16 C 1.46505 * 119.99807 * 180.02562 * 15 13 12 17 17 C 1.50701 * 109.46756 * 180.02562 * 16 15 13 18 18 H 1.08005 * 120.00205 * 0.02562 * 17 16 15 19 19 C 1.37887 * 119.99823 * 180.02562 * 17 16 15 20 20 N 1.31512 * 119.99631 * 180.02562 * 19 17 16 21 21 Si 1.86791 * 119.99881 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.47422 * 89.99955 * 21 19 17 23 23 H 1.48501 * 109.47065 * 210.00018 * 21 19 17 24 24 H 1.48499 * 109.47271 * 330.00087 * 21 19 17 25 25 C 1.53126 * 109.16239 * 302.32855 * 11 10 9 26 26 C 1.46850 * 110.99700 * 359.72316 * 8 7 6 27 27 C 1.38568 * 120.01970 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47288 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47628 * 300.00340 * 1 2 3 30 30 H 1.09009 * 109.46792 * 60.00476 * 1 2 3 31 31 H 1.07997 * 119.95877 * 359.97438 * 4 3 2 32 32 H 1.08004 * 119.93110 * 180.02562 * 5 4 3 33 33 H 1.08001 * 119.98514 * 180.28314 * 6 5 4 34 34 H 1.08994 * 109.51866 * 54.15404 * 9 8 7 35 35 H 1.09007 * 109.45009 * 294.16087 * 9 8 7 36 36 H 1.09002 * 109.50283 * 299.19589 * 10 9 8 37 37 H 1.09003 * 109.50113 * 179.11776 * 10 9 8 38 38 H 1.09006 * 109.52545 * 62.23190 * 11 10 9 39 39 H 0.97001 * 119.99852 * 24.99799 * 12 11 10 40 40 H 0.96996 * 119.99880 * 0.02562 * 15 13 12 41 41 H 1.08998 * 109.47151 * 299.99994 * 16 15 13 42 42 H 1.08998 * 109.47166 * 60.00810 * 16 15 13 43 43 H 0.97001 * 119.99420 * 179.97438 * 20 19 17 44 44 H 1.08997 * 109.50509 * 177.59319 * 25 11 10 45 45 H 1.08997 * 109.49757 * 297.67568 * 25 11 10 46 46 H 1.08997 * 109.46198 * 65.82218 * 26 8 7 47 47 H 1.08999 * 109.45191 * 305.84934 * 26 8 7 48 48 H 1.07998 * 120.06662 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2902 2.3753 -0.0005 5 6 1.9159 3.6073 -0.0011 6 6 3.2953 3.6845 0.0045 7 6 4.0569 2.5225 -0.0003 8 7 5.4514 2.6003 0.0004 9 6 6.0192 1.8598 1.1353 10 6 7.5454 1.8449 1.0228 11 6 8.0666 3.2845 1.0157 12 7 9.5222 3.2774 0.8499 13 6 10.2569 4.3135 1.3007 14 8 9.7117 5.2540 1.8453 15 7 11.5960 4.3067 1.1486 16 6 12.3946 5.4327 1.6391 17 6 13.8513 5.1803 1.3470 18 1 14.1521 4.2721 0.8458 19 6 14.8002 6.1088 1.7197 20 7 16.0714 5.8886 1.4644 21 14 14.2799 7.6797 2.5860 22 1 14.2793 7.4584 4.0545 23 1 15.2317 8.7689 2.2500 24 1 12.9149 8.0608 2.1424 25 6 7.4231 4.0464 -0.1463 26 6 5.9004 3.9984 -0.0002 27 6 3.4297 1.2838 0.0005 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 0.2118 2.3183 -0.0014 32 1 1.3255 4.5116 -0.0011 33 1 3.7819 4.6486 0.0086 34 1 5.6443 0.8364 1.1266 35 1 5.7285 2.3449 2.0672 36 1 7.8372 1.3476 0.0977 37 1 7.9677 1.3091 1.8729 38 1 7.8087 3.7701 1.9569 39 1 9.9573 2.5270 0.4158 40 1 12.0310 3.5563 0.7145 41 1 12.0775 6.3480 1.1394 42 1 12.2523 5.5379 2.7147 43 1 16.7388 6.5420 1.7262 44 1 7.7575 5.0837 -0.1310 45 1 7.7135 3.5842 -1.0897 46 1 5.6102 4.4735 0.9369 47 1 5.4387 4.5276 -0.8339 48 1 4.0193 0.3789 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324830255.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:51 Heat of formation + Delta-G solvation = -57.186185 kcal Electronic energy + Delta-G solvation = -27802.471545 eV Core-core repulsion = 23856.682605 eV Total energy + Delta-G solvation = -3945.788940 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.68789 -40.97835 -40.04522 -38.03931 -36.28081 -35.73623 -34.42800 -32.89152 -32.47172 -31.24806 -30.01583 -29.10818 -28.07045 -25.39937 -24.88711 -23.89597 -22.78461 -22.22911 -21.77591 -21.00583 -19.79758 -19.28485 -18.28949 -17.72362 -17.27600 -16.88783 -16.79200 -16.63060 -16.40646 -16.32645 -15.92647 -15.68152 -15.26454 -14.99180 -14.87082 -14.63892 -14.51926 -14.34951 -14.19633 -13.97666 -13.56818 -13.20074 -13.12022 -13.01003 -12.70371 -12.59658 -12.57124 -12.21958 -12.06832 -11.98287 -11.91742 -11.73105 -11.64320 -11.57921 -11.22467 -10.90597 -10.64872 -10.25150 -9.64286 -9.31112 -8.82179 -8.38787 -6.45403 0.36917 0.48308 1.34132 1.36032 1.49425 1.86200 2.23523 2.24872 2.29782 2.65724 2.94967 2.96956 3.45589 3.66795 3.77890 3.90288 4.01831 4.08649 4.15727 4.23566 4.25625 4.29720 4.40255 4.41789 4.48955 4.52269 4.59439 4.63062 4.74932 4.76723 4.78387 4.81085 4.90934 5.04216 5.07064 5.12365 5.23165 5.26497 5.28709 5.34249 5.48506 5.56774 5.57688 5.61898 5.98388 6.00838 6.21904 6.31466 6.48568 6.56912 7.15960 7.29658 7.70081 8.75943 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.038031 B = 0.001797 C = 0.001744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.064111 B =15574.890443 C =16049.599806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.337 6.337 3 C 0.138 3.862 4 C -0.239 4.239 5 C -0.056 4.056 6 C -0.220 4.220 7 C 0.144 3.856 8 N -0.491 5.491 9 C 0.064 3.936 10 C -0.114 4.114 11 C 0.162 3.838 12 N -0.728 5.728 13 C 0.695 3.305 14 O -0.644 6.644 15 N -0.723 5.723 16 C 0.252 3.748 17 C -0.546 4.546 18 H 0.059 0.941 19 C 0.027 3.973 20 N -0.931 5.931 21 Si 0.938 3.062 22 H -0.265 1.265 23 H -0.273 1.273 24 H -0.261 1.261 25 C -0.123 4.123 26 C 0.062 3.938 27 C -0.190 4.190 28 H 0.117 0.883 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.146 0.854 32 H 0.147 0.853 33 H 0.135 0.865 34 H 0.101 0.899 35 H 0.045 0.955 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.063 0.937 39 H 0.410 0.590 40 H 0.405 0.595 41 H 0.009 0.991 42 H 0.008 0.992 43 H 0.272 0.728 44 H 0.055 0.945 45 H 0.079 0.921 46 H 0.048 0.952 47 H 0.093 0.907 48 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.834 -12.083 -3.914 36.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.251 6.251 3 C 0.092 3.908 4 C -0.258 4.258 5 C -0.075 4.075 6 C -0.241 4.241 7 C 0.045 3.955 8 N -0.206 5.206 9 C -0.061 4.061 10 C -0.152 4.152 11 C 0.057 3.943 12 N -0.384 5.384 13 C 0.395 3.605 14 O -0.526 6.526 15 N -0.376 5.376 16 C 0.128 3.872 17 C -0.584 4.584 18 H 0.077 0.923 19 C -0.173 4.173 20 N -0.570 5.570 21 Si 0.761 3.239 22 H -0.190 1.190 23 H -0.198 1.198 24 H -0.185 1.185 25 C -0.162 4.162 26 C -0.065 4.065 27 C -0.211 4.211 28 H 0.135 0.865 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.164 0.836 32 H 0.165 0.835 33 H 0.153 0.847 34 H 0.120 0.880 35 H 0.063 0.937 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.081 0.919 39 H 0.247 0.753 40 H 0.240 0.760 41 H 0.027 0.973 42 H 0.026 0.974 43 H 0.081 0.919 44 H 0.074 0.926 45 H 0.098 0.902 46 H 0.066 0.934 47 H 0.111 0.889 48 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -33.759 -11.578 -3.810 35.892 hybrid contribution 0.397 0.679 0.501 0.932 sum -33.363 -10.900 -3.310 35.254 Atomic orbital electron populations 1.23329 0.76392 1.05470 1.02287 1.86037 1.23503 1.26967 1.88555 1.18942 0.91985 0.84787 0.95044 1.21416 1.01013 0.91923 1.11464 1.21087 0.93968 0.97931 0.94468 1.21470 0.94907 0.98035 1.09675 1.18724 0.88148 0.93128 0.95482 1.58996 1.05153 1.14320 1.42106 1.22240 0.94205 0.99604 0.90061 1.21846 0.94275 0.94286 1.04790 1.20882 0.77807 0.97398 0.98247 1.44993 1.07150 1.21791 1.64438 1.16230 0.81772 0.83223 0.79270 1.90826 1.72230 1.37802 1.51771 1.45119 1.04519 1.24579 1.63399 1.18926 0.89162 0.85526 0.93618 1.21291 0.90134 1.06911 1.40054 0.92281 1.25576 0.94598 1.01365 0.95781 1.69981 1.01512 1.37563 1.47924 0.85855 0.78942 0.79439 0.79630 1.19007 1.19774 1.18524 1.21955 0.94179 1.00582 0.99502 1.22179 0.94887 0.87397 1.02013 1.19988 0.91907 0.97350 1.11889 0.86509 0.91679 0.91702 0.83591 0.83517 0.84724 0.88037 0.93701 0.89024 0.89015 0.91900 0.75315 0.76015 0.97268 0.97361 0.91858 0.92639 0.90245 0.93426 0.88858 0.84955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 113.37 1.11 1.26 16 2 O -0.34 -5.55 10.49 -92.42 -0.97 -6.52 16 3 C 0.14 2.45 6.68 22.49 0.15 2.60 16 4 C -0.24 -3.45 9.04 22.39 0.20 -3.25 16 5 C -0.06 -0.81 10.03 22.24 0.22 -0.58 16 6 C -0.22 -3.78 8.82 22.42 0.20 -3.58 16 7 C 0.14 2.71 5.64 38.20 0.22 2.92 16 8 N -0.49 -8.98 4.70 -695.24 -3.27 -12.25 16 9 C 0.06 1.03 5.26 86.31 0.45 1.49 16 10 C -0.11 -1.82 5.56 30.64 0.17 -1.65 16 11 C 0.16 3.78 2.52 45.07 0.11 3.89 16 12 N -0.73 -19.47 5.09 -457.43 -2.33 -21.80 16 13 C 0.70 26.78 8.54 179.06 1.53 28.31 16 14 O -0.64 -30.18 16.01 -3.98 -0.06 -30.24 16 15 N -0.72 -29.52 5.55 -482.30 -2.68 -32.20 16 16 C 0.25 12.61 4.50 85.63 0.38 13.00 16 17 C -0.55 -30.44 9.83 25.60 0.25 -30.18 16 18 H 0.06 3.45 7.84 -2.91 -0.02 3.42 16 19 C 0.03 1.54 5.47 84.66 0.46 2.01 16 20 N -0.93 -55.83 13.96 21.45 0.30 -55.53 16 21 Si 0.94 44.49 27.47 68.60 1.88 46.37 16 22 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 23 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 24 H -0.26 -12.34 6.54 99.48 0.65 -11.69 16 25 C -0.12 -2.78 5.67 30.65 0.17 -2.60 16 26 C 0.06 1.19 4.15 86.33 0.36 1.55 16 27 C -0.19 -3.59 9.10 22.49 0.20 -3.39 16 28 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.06 0.38 7.66 -2.39 -0.02 0.36 16 30 H 0.06 0.38 7.66 -2.38 -0.02 0.36 16 31 H 0.15 1.37 6.29 -2.91 -0.02 1.35 16 32 H 0.15 1.37 8.06 -2.91 -0.02 1.34 16 33 H 0.14 2.09 5.80 -2.91 -0.02 2.07 16 34 H 0.10 1.38 6.71 -2.39 -0.02 1.36 16 35 H 0.04 0.77 8.14 -2.38 -0.02 0.75 16 36 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.06 1.79 7.58 -2.38 -0.02 1.77 16 39 H 0.41 8.38 8.62 -92.71 -0.80 7.58 16 40 H 0.40 14.36 8.33 -92.71 -0.77 13.59 16 41 H 0.01 0.50 7.20 -2.39 -0.02 0.48 16 42 H 0.01 0.44 7.57 -2.39 -0.02 0.42 16 43 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 44 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.08 1.70 8.14 -2.39 -0.02 1.69 16 46 H 0.05 0.94 7.72 -2.39 -0.02 0.92 16 47 H 0.09 1.63 6.99 -2.39 -0.02 1.62 16 48 H 0.13 2.37 7.15 -2.91 -0.02 2.35 16 Total: -1.00 -73.24 382.97 -1.56 -74.80 By element: Atomic # 1 Polarization: 26.22 SS G_CDS: -0.64 Total: 25.58 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: 6.20 Total: 11.79 kcal Atomic # 7 Polarization: -113.80 SS G_CDS: -7.97 Total: -121.77 kcal Atomic # 8 Polarization: -35.73 SS G_CDS: -1.03 Total: -36.76 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 1.88 Total: 46.37 kcal Total: -73.24 -1.56 -74.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324830255.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.613 kcal (2) G-P(sol) polarization free energy of solvation -73.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds