Wall clock time and date at job start Tue Mar 31 2020 17:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34771 * 119.99742 * 2 1 4 4 O 1.21551 * 120.00483 * 359.97438 * 3 2 1 5 5 C 1.47844 * 119.99882 * 179.97438 * 3 2 1 6 6 C 1.39584 * 120.14569 * 179.97438 * 5 3 2 7 7 C 1.37958 * 119.85083 * 180.02562 * 6 5 3 8 8 C 1.38360 * 120.14558 * 0.02682 * 7 6 5 9 9 C 1.50706 * 119.84836 * 179.97438 * 8 7 6 10 10 N 1.46497 * 109.46972 * 90.00154 * 9 8 7 11 11 C 1.46505 * 120.00015 * 269.99750 * 10 9 8 12 12 C 1.34781 * 120.00245 * 89.99369 * 10 9 8 13 13 O 1.21275 * 119.99676 * 0.02562 * 12 10 9 14 14 C 1.50703 * 119.99971 * 179.97438 * 12 10 9 15 15 H 1.09002 * 109.47083 * 320.00492 * 14 12 10 16 16 N 1.46898 * 109.47113 * 200.00293 * 14 12 10 17 17 C 1.53000 * 109.46801 * 80.00207 * 14 12 10 18 18 C 1.52997 * 109.47060 * 184.99876 * 17 14 12 19 19 C 1.50697 * 109.47466 * 180.02562 * 18 17 14 20 20 H 1.08001 * 119.99890 * 0.02562 * 19 18 17 21 21 C 1.37876 * 120.00428 * 179.97438 * 19 18 17 22 22 N 1.31519 * 119.99563 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00432 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46756 * 59.99920 * 23 21 19 25 25 H 1.48490 * 109.47381 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47117 * 300.00527 * 23 21 19 27 27 C 1.38356 * 120.29534 * 0.22586 * 8 7 6 28 28 C 1.37958 * 120.14326 * 359.49566 * 27 8 7 29 29 H 1.09000 * 109.47254 * 300.00233 * 1 2 3 30 30 H 1.09002 * 109.46630 * 60.00445 * 1 2 3 31 31 H 1.09007 * 109.46823 * 180.02562 * 1 2 3 32 32 H 0.97006 * 120.00074 * 179.97438 * 2 1 3 33 33 H 1.07999 * 120.07076 * 359.97438 * 6 5 3 34 34 H 1.07997 * 119.92140 * 179.97438 * 7 6 5 35 35 H 1.08994 * 109.47197 * 329.99715 * 9 8 7 36 36 H 1.09001 * 109.46750 * 209.99617 * 9 8 7 37 37 H 1.09001 * 109.46692 * 270.00187 * 11 10 9 38 38 H 1.09007 * 109.46709 * 29.99949 * 11 10 9 39 39 H 1.08998 * 109.47293 * 150.00019 * 11 10 9 40 40 H 1.00899 * 111.00057 * 300.00501 * 16 14 12 41 41 H 1.00902 * 110.99515 * 63.95638 * 16 14 12 42 42 H 1.09002 * 109.47398 * 305.00045 * 17 14 12 43 43 H 1.09001 * 109.47194 * 65.00225 * 17 14 12 44 44 H 1.09002 * 109.47153 * 300.00319 * 18 17 14 45 45 H 1.08998 * 109.47533 * 59.99948 * 18 17 14 46 46 H 0.97002 * 119.99731 * 180.02562 * 22 21 19 47 47 H 1.07999 * 119.92957 * 179.74693 * 27 8 7 48 48 H 1.07998 * 120.07237 * 180.25043 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5311 2.2199 -0.0005 5 6 3.6173 1.1672 0.0006 6 6 4.3182 2.3743 0.0000 7 6 5.6978 2.3672 0.0000 8 6 6.3865 1.1672 0.0000 9 6 7.8936 1.1673 -0.0006 10 7 8.3824 1.1676 1.3804 11 6 8.6268 2.4365 2.0708 12 6 8.6072 0.0005 2.0160 13 8 8.4053 -1.0499 1.4445 14 6 9.1106 0.0008 3.4365 15 1 9.8548 0.7880 3.5581 16 7 9.7204 -1.3006 3.7402 17 6 7.9420 0.2519 4.3916 18 6 8.4702 0.3763 5.8221 19 6 7.3191 0.6230 6.7630 20 1 6.3115 0.6843 6.3791 21 6 7.5522 0.7692 8.1140 22 7 8.7791 0.6939 8.5815 23 14 6.1254 1.0756 9.2802 24 1 5.1697 -0.0583 9.2016 25 1 6.6379 1.1951 10.6687 26 1 5.4343 2.3329 8.8972 27 6 5.6978 -0.0328 -0.0047 28 6 4.3183 -0.0398 0.0010 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.9501 -0.8401 0.0004 33 1 3.7818 3.3116 -0.0012 34 1 6.2413 3.3005 -0.0008 35 1 8.2567 2.0571 -0.5147 36 1 8.2567 0.2772 -0.5143 37 1 9.6562 2.7511 1.8990 38 1 7.9458 3.1960 1.6867 39 1 8.4602 2.3064 3.1400 40 1 9.0502 -2.0474 3.6346 41 1 10.5344 -1.4613 3.1659 42 1 7.4344 1.1745 4.1101 43 1 7.2407 -0.5806 4.3344 44 1 8.9778 -0.5463 6.1036 45 1 9.1715 1.2088 5.8794 46 1 8.9431 0.7964 9.5321 47 1 6.2414 -0.9660 -0.0088 48 1 3.7819 -0.9772 0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325739894.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:54 Heat of formation + Delta-G solvation = -50.858398 kcal Electronic energy + Delta-G solvation = -28499.693816 eV Core-core repulsion = 24554.179269 eV Total energy + Delta-G solvation = -3945.514547 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.58053 -40.00018 -38.55893 -35.74196 -35.31782 -34.96949 -32.84235 -32.18871 -31.20278 -30.13619 -28.45369 -26.89755 -26.74540 -25.46900 -23.53207 -22.86573 -22.24775 -20.63568 -20.31816 -19.05090 -18.50407 -17.21930 -16.51860 -16.42258 -16.22606 -15.86678 -15.47954 -15.39297 -15.18018 -14.89657 -14.77378 -14.38473 -13.97795 -13.73403 -13.51876 -13.37213 -13.33927 -13.02864 -12.63738 -12.57522 -12.47665 -12.25985 -12.09467 -11.98656 -11.87348 -11.54407 -11.20793 -10.87316 -10.68284 -10.57317 -10.25027 -10.13115 -9.79956 -9.51119 -9.38586 -9.19868 -9.08091 -9.02493 -8.74581 -8.35422 -8.20734 -5.94863 -3.97117 0.55971 1.18098 2.53590 2.71192 2.89771 3.10601 3.35722 3.40240 3.42955 3.71134 4.36752 4.43800 4.49473 4.63595 4.66037 4.78469 4.88856 4.93955 5.06634 5.10141 5.13052 5.18203 5.33695 5.38468 5.40640 5.45013 5.47191 5.55011 5.61455 5.74920 5.80203 5.83084 6.01849 6.07062 6.10655 6.30104 6.35063 6.46569 6.63605 6.65926 7.05406 7.14027 7.26541 7.47340 7.74002 7.77196 7.91190 7.94001 8.11339 8.21097 8.47023 9.10581 9.66220 11.15927 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.008420 B = 0.003322 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3324.556741 B = 8425.508399 C =10611.352920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.733 5.733 3 C 0.560 3.440 4 O -0.538 6.538 5 C -0.137 4.137 6 C -0.061 4.061 7 C -0.114 4.114 8 C -0.076 4.076 9 C 0.148 3.852 10 N -0.611 5.611 11 C 0.067 3.933 12 C 0.486 3.514 13 O -0.552 6.552 14 C 0.078 3.922 15 H 0.098 0.902 16 N -0.807 5.807 17 C -0.096 4.096 18 C 0.033 3.967 19 C -0.523 4.523 20 H 0.051 0.949 21 C 0.059 3.941 22 N -0.892 5.892 23 Si 0.888 3.112 24 H -0.278 1.278 25 H -0.287 1.287 26 H -0.278 1.278 27 C -0.102 4.102 28 C -0.087 4.087 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.402 0.598 33 H 0.136 0.864 34 H 0.129 0.871 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.058 0.942 38 H 0.070 0.930 39 H 0.091 0.909 40 H 0.347 0.653 41 H 0.334 0.666 42 H 0.055 0.945 43 H 0.052 0.948 44 H 0.035 0.965 45 H 0.013 0.987 46 H 0.260 0.740 47 H 0.135 0.865 48 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.078 0.293 -22.069 22.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.385 5.385 3 C 0.348 3.652 4 O -0.415 6.415 5 C -0.141 4.141 6 C -0.080 4.080 7 C -0.133 4.133 8 C -0.078 4.078 9 C 0.025 3.975 10 N -0.345 5.345 11 C -0.076 4.076 12 C 0.274 3.726 13 O -0.429 6.429 14 C -0.037 4.037 15 H 0.116 0.884 16 N -0.334 5.334 17 C -0.134 4.134 18 C -0.004 4.004 19 C -0.562 4.562 20 H 0.069 0.931 21 C -0.142 4.142 22 N -0.532 5.532 23 Si 0.716 3.284 24 H -0.203 1.203 25 H -0.213 1.213 26 H -0.203 1.203 27 C -0.120 4.120 28 C -0.106 4.106 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.237 0.763 33 H 0.154 0.846 34 H 0.147 0.853 35 H 0.104 0.896 36 H 0.110 0.890 37 H 0.077 0.923 38 H 0.089 0.911 39 H 0.109 0.891 40 H 0.161 0.839 41 H 0.145 0.855 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.053 0.947 45 H 0.031 0.969 46 H 0.070 0.930 47 H 0.153 0.847 48 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.409 0.782 -21.440 22.391 hybrid contribution -0.898 -0.391 -0.262 1.014 sum -7.307 0.391 -21.702 22.902 Atomic orbital electron populations 1.21566 0.79152 1.02398 1.02520 1.45723 1.07980 1.08733 1.76097 1.18359 0.87382 0.83678 0.75818 1.90768 1.70018 1.31162 1.49582 1.19888 0.92392 0.94728 1.07068 1.21221 0.93832 0.97614 0.95298 1.21046 0.93820 0.97744 1.00660 1.20504 0.96504 0.93329 0.97467 1.20387 0.89011 1.03953 0.84110 1.48027 1.65874 1.07182 1.13366 1.22054 1.01087 0.84870 0.99579 1.22807 0.76381 0.82890 0.90509 1.90603 1.52907 1.31171 1.68245 1.21864 0.99298 0.94517 0.88056 0.88410 1.59000 1.11038 1.03063 1.60348 1.21693 0.94026 1.00155 0.97514 1.19000 0.95903 0.98105 0.87413 1.21232 0.93632 1.49110 0.92193 0.93096 1.24977 0.95401 0.95532 0.98303 1.69964 1.19177 1.50274 1.13741 0.86727 0.82818 0.78757 0.80092 1.20342 1.21296 1.20330 1.21149 0.93657 0.98543 0.98687 1.21263 0.94622 0.96688 0.98030 0.91964 0.92097 0.90475 0.76264 0.84640 0.85294 0.89558 0.88980 0.92320 0.91112 0.89074 0.83886 0.85477 0.92691 0.92932 0.94688 0.96906 0.93030 0.84728 0.85787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.65 10.70 59.85 0.64 1.29 16 2 N -0.73 -6.60 5.66 -68.04 -0.39 -6.99 16 3 C 0.56 6.96 7.77 -12.33 -0.10 6.86 16 4 O -0.54 -8.47 16.35 5.32 0.09 -8.38 16 5 C -0.14 -1.61 5.87 -104.96 -0.62 -2.23 16 6 C -0.06 -0.70 9.60 -39.18 -0.38 -1.07 16 7 C -0.11 -1.16 9.68 -39.64 -0.38 -1.55 16 8 C -0.08 -0.83 5.47 -104.53 -0.57 -1.40 16 9 C 0.15 1.50 5.53 -5.19 -0.03 1.48 16 10 N -0.61 -7.36 2.86 -182.95 -0.52 -7.88 16 11 C 0.07 0.69 9.85 59.85 0.59 1.28 16 12 C 0.49 7.28 6.91 -10.98 -0.08 7.20 16 13 O -0.55 -9.25 15.36 5.56 0.09 -9.16 16 14 C 0.08 1.28 2.31 -68.86 -0.16 1.12 16 15 H 0.10 1.52 7.21 -51.93 -0.37 1.14 16 16 N -0.81 -13.23 8.44 -5.65 -0.05 -13.28 16 17 C -0.10 -1.90 4.45 -26.73 -0.12 -2.02 16 18 C 0.03 0.83 4.86 -27.89 -0.14 0.69 16 19 C -0.52 -14.69 9.11 -34.44 -0.31 -15.00 16 20 H 0.05 1.40 7.74 -52.49 -0.41 1.00 16 21 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 22 N -0.89 -26.72 13.29 55.43 0.74 -25.98 16 23 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 27 C -0.10 -1.16 9.68 -39.64 -0.38 -1.55 16 28 C -0.09 -0.91 9.54 -39.18 -0.37 -1.28 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.33 8.14 -51.92 -0.42 -0.09 16 32 H 0.40 2.58 6.86 -40.82 -0.28 2.30 16 33 H 0.14 1.52 7.65 -52.49 -0.40 1.12 16 34 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 35 H 0.09 0.64 8.01 -51.93 -0.42 0.23 16 36 H 0.09 1.00 7.36 -51.93 -0.38 0.61 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.60 8.07 -51.93 -0.42 0.18 16 39 H 0.09 1.13 4.83 -51.93 -0.25 0.88 16 40 H 0.35 5.77 8.58 -39.29 -0.34 5.43 16 41 H 0.33 4.71 9.06 -39.29 -0.36 4.36 16 42 H 0.05 1.04 6.43 -51.93 -0.33 0.71 16 43 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.03 0.96 7.75 -51.93 -0.40 0.55 16 45 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 47 H 0.13 1.61 7.58 -52.49 -0.40 1.21 16 48 H 0.12 0.94 6.41 -52.49 -0.34 0.60 16 LS Contribution 398.38 15.07 6.00 6.00 Total: -1.00 -35.27 398.38 -8.75 -44.03 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -7.19 Total: 9.52 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: -2.50 Total: -4.60 kcal Atomic # 7 Polarization: -53.91 SS G_CDS: -0.22 Total: -54.13 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: 0.17 Total: -17.54 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.27 -8.75 -44.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325739894.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.831 kcal (2) G-P(sol) polarization free energy of solvation -35.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds