Wall clock time and date at job start Tue Mar 31 2020 17:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34771 * 119.99742 * 2 1 4 4 O 1.21551 * 120.00483 * 359.97438 * 3 2 1 5 5 C 1.47844 * 119.99882 * 179.97438 * 3 2 1 6 6 C 1.39584 * 120.14569 * 179.97438 * 5 3 2 7 7 C 1.37958 * 119.85083 * 180.02562 * 6 5 3 8 8 C 1.38360 * 120.14558 * 0.02682 * 7 6 5 9 9 C 1.50706 * 119.84836 * 179.97438 * 8 7 6 10 10 N 1.46497 * 109.46972 * 90.00154 * 9 8 7 11 11 C 1.46505 * 120.00015 * 269.99750 * 10 9 8 12 12 C 1.34781 * 120.00245 * 89.99369 * 10 9 8 13 13 O 1.21275 * 119.99676 * 0.02562 * 12 10 9 14 14 C 1.50703 * 119.99971 * 179.97438 * 12 10 9 15 15 H 1.09002 * 109.47083 * 320.00492 * 14 12 10 16 16 N 1.46898 * 109.47113 * 200.00293 * 14 12 10 17 17 C 1.53000 * 109.46801 * 80.00207 * 14 12 10 18 18 C 1.52997 * 109.47060 * 184.99876 * 17 14 12 19 19 C 1.50697 * 109.47466 * 180.02562 * 18 17 14 20 20 H 1.08001 * 119.99890 * 0.02562 * 19 18 17 21 21 C 1.37876 * 120.00428 * 179.97438 * 19 18 17 22 22 N 1.31519 * 119.99563 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00432 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46756 * 59.99920 * 23 21 19 25 25 H 1.48490 * 109.47381 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47117 * 300.00527 * 23 21 19 27 27 C 1.38356 * 120.29534 * 0.22586 * 8 7 6 28 28 C 1.37958 * 120.14326 * 359.49566 * 27 8 7 29 29 H 1.09000 * 109.47254 * 300.00233 * 1 2 3 30 30 H 1.09002 * 109.46630 * 60.00445 * 1 2 3 31 31 H 1.09007 * 109.46823 * 180.02562 * 1 2 3 32 32 H 0.97006 * 120.00074 * 179.97438 * 2 1 3 33 33 H 1.07999 * 120.07076 * 359.97438 * 6 5 3 34 34 H 1.07997 * 119.92140 * 179.97438 * 7 6 5 35 35 H 1.08994 * 109.47197 * 329.99715 * 9 8 7 36 36 H 1.09001 * 109.46750 * 209.99617 * 9 8 7 37 37 H 1.09001 * 109.46692 * 270.00187 * 11 10 9 38 38 H 1.09007 * 109.46709 * 29.99949 * 11 10 9 39 39 H 1.08998 * 109.47293 * 150.00019 * 11 10 9 40 40 H 1.00899 * 111.00057 * 300.00501 * 16 14 12 41 41 H 1.00902 * 110.99515 * 63.95638 * 16 14 12 42 42 H 1.09002 * 109.47398 * 305.00045 * 17 14 12 43 43 H 1.09001 * 109.47194 * 65.00225 * 17 14 12 44 44 H 1.09002 * 109.47153 * 300.00319 * 18 17 14 45 45 H 1.08998 * 109.47533 * 59.99948 * 18 17 14 46 46 H 0.97002 * 119.99731 * 180.02562 * 22 21 19 47 47 H 1.07999 * 119.92957 * 179.74693 * 27 8 7 48 48 H 1.07998 * 120.07237 * 180.25043 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5311 2.2199 -0.0005 5 6 3.6173 1.1672 0.0006 6 6 4.3182 2.3743 0.0000 7 6 5.6978 2.3672 0.0000 8 6 6.3865 1.1672 0.0000 9 6 7.8936 1.1673 -0.0006 10 7 8.3824 1.1676 1.3804 11 6 8.6268 2.4365 2.0708 12 6 8.6072 0.0005 2.0160 13 8 8.4053 -1.0499 1.4445 14 6 9.1106 0.0008 3.4365 15 1 9.8548 0.7880 3.5581 16 7 9.7204 -1.3006 3.7402 17 6 7.9420 0.2519 4.3916 18 6 8.4702 0.3763 5.8221 19 6 7.3191 0.6230 6.7630 20 1 6.3115 0.6843 6.3791 21 6 7.5522 0.7692 8.1140 22 7 8.7791 0.6939 8.5815 23 14 6.1254 1.0756 9.2802 24 1 5.1697 -0.0583 9.2016 25 1 6.6379 1.1951 10.6687 26 1 5.4343 2.3329 8.8972 27 6 5.6978 -0.0328 -0.0047 28 6 4.3183 -0.0398 0.0010 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.9501 -0.8401 0.0004 33 1 3.7818 3.3116 -0.0012 34 1 6.2413 3.3005 -0.0008 35 1 8.2567 2.0571 -0.5147 36 1 8.2567 0.2772 -0.5143 37 1 9.6562 2.7511 1.8990 38 1 7.9458 3.1960 1.6867 39 1 8.4602 2.3064 3.1400 40 1 9.0502 -2.0474 3.6346 41 1 10.5344 -1.4613 3.1659 42 1 7.4344 1.1745 4.1101 43 1 7.2407 -0.5806 4.3344 44 1 8.9778 -0.5463 6.1036 45 1 9.1715 1.2088 5.8794 46 1 8.9431 0.7964 9.5321 47 1 6.2414 -0.9660 -0.0088 48 1 3.7819 -0.9772 0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325739894.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:53 Heat of formation + Delta-G solvation = -76.188787 kcal Electronic energy + Delta-G solvation = -28500.792224 eV Core-core repulsion = 24554.179269 eV Total energy + Delta-G solvation = -3946.612955 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.53270 -41.04415 -39.47682 -36.90325 -36.68487 -35.82118 -34.82909 -33.07515 -32.02190 -31.92777 -29.37072 -28.12404 -27.70790 -26.74973 -24.97537 -23.74825 -23.25796 -22.08399 -21.43511 -20.18594 -19.33248 -18.54812 -18.19134 -17.39348 -17.32986 -16.94317 -16.68720 -16.47394 -16.34031 -15.99190 -15.84755 -15.68633 -15.14481 -14.79024 -14.57850 -14.35314 -14.29719 -14.12345 -13.97679 -13.68817 -13.48585 -13.38032 -13.26848 -13.18328 -12.86832 -12.83676 -12.72033 -12.50973 -12.20953 -12.01305 -11.69094 -11.61699 -11.22959 -11.21801 -10.97911 -10.48599 -10.34990 -10.01368 -9.95575 -9.70370 -9.52766 -8.13917 -6.23871 -0.30455 0.35502 1.41115 1.43153 1.48922 1.51622 1.66262 2.13472 2.15590 2.44028 2.84935 3.19071 3.49358 3.57720 3.68120 3.77860 3.84280 3.94491 4.11447 4.18638 4.29089 4.32049 4.33252 4.40739 4.56073 4.56319 4.60197 4.71349 4.77034 4.81347 4.88273 4.90665 4.98680 5.04005 5.20352 5.25697 5.29460 5.30722 5.46238 5.52565 5.57007 5.84030 5.84769 5.99042 6.10034 6.30081 6.32196 6.38746 6.53969 6.94446 7.06628 7.08286 7.44122 8.96956 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.008420 B = 0.003322 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3324.556741 B = 8425.508399 C =10611.352920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.721 5.721 3 C 0.553 3.447 4 O -0.581 6.581 5 C -0.151 4.151 6 C -0.075 4.075 7 C -0.109 4.109 8 C -0.082 4.082 9 C 0.148 3.852 10 N -0.604 5.604 11 C 0.061 3.939 12 C 0.489 3.511 13 O -0.572 6.572 14 C 0.085 3.915 15 H 0.107 0.893 16 N -0.820 5.820 17 C -0.079 4.079 18 C 0.043 3.957 19 C -0.544 4.544 20 H 0.052 0.948 21 C 0.005 3.995 22 N -0.928 5.928 23 Si 0.955 3.045 24 H -0.272 1.272 25 H -0.282 1.282 26 H -0.268 1.268 27 C -0.116 4.116 28 C -0.084 4.084 29 H 0.049 0.951 30 H 0.056 0.944 31 H 0.113 0.887 32 H 0.416 0.584 33 H 0.132 0.868 34 H 0.157 0.843 35 H 0.122 0.878 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.095 0.905 39 H 0.068 0.932 40 H 0.345 0.655 41 H 0.347 0.653 42 H 0.064 0.936 43 H 0.038 0.962 44 H 0.005 0.995 45 H -0.005 1.005 46 H 0.262 0.738 47 H 0.127 0.873 48 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.608 0.748 -23.061 24.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.373 5.373 3 C 0.342 3.658 4 O -0.462 6.462 5 C -0.155 4.155 6 C -0.094 4.094 7 C -0.127 4.127 8 C -0.083 4.083 9 C 0.026 3.974 10 N -0.335 5.335 11 C -0.081 4.081 12 C 0.275 3.725 13 O -0.452 6.452 14 C -0.030 4.030 15 H 0.125 0.875 16 N -0.349 5.349 17 C -0.117 4.117 18 C 0.006 3.994 19 C -0.582 4.582 20 H 0.070 0.930 21 C -0.193 4.193 22 N -0.568 5.568 23 Si 0.780 3.220 24 H -0.197 1.197 25 H -0.208 1.208 26 H -0.192 1.192 27 C -0.135 4.135 28 C -0.103 4.103 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.132 0.868 32 H 0.253 0.747 33 H 0.150 0.850 34 H 0.174 0.826 35 H 0.140 0.860 36 H 0.103 0.897 37 H 0.100 0.900 38 H 0.114 0.886 39 H 0.086 0.914 40 H 0.158 0.842 41 H 0.160 0.840 42 H 0.083 0.917 43 H 0.056 0.944 44 H 0.023 0.977 45 H 0.013 0.987 46 H 0.071 0.929 47 H 0.145 0.855 48 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -6.940 1.223 -22.459 23.538 hybrid contribution -0.726 -0.547 0.020 0.909 sum -7.666 0.676 -22.439 23.722 Atomic orbital electron populations 1.21743 0.78055 1.04566 1.01730 1.45723 1.08816 1.08419 1.74317 1.18591 0.87811 0.83955 0.75489 1.90738 1.70779 1.32706 1.51978 1.19992 0.92197 0.95417 1.07867 1.21384 0.94653 0.97575 0.95759 1.21278 0.93290 0.98627 0.99500 1.20645 0.96949 0.93381 0.97356 1.20568 0.88486 1.05432 0.82871 1.48023 1.64581 1.06816 1.14113 1.22218 1.03271 0.84457 0.98148 1.22317 0.76667 0.83587 0.89885 1.90599 1.53936 1.32126 1.68512 1.21619 0.98112 0.94750 0.88545 0.87514 1.58968 1.11626 1.03070 1.61193 1.21380 0.94958 1.00056 0.95342 1.18790 0.94660 0.95673 0.90322 1.21678 0.94454 1.48887 0.93185 0.92971 1.25842 0.98049 0.95239 1.00162 1.70089 1.21290 1.51197 1.14206 0.85664 0.79507 0.79010 0.77842 1.19723 1.20759 1.19249 1.21248 0.94128 0.98670 0.99425 1.21466 0.94459 0.97314 0.97061 0.93180 0.92495 0.86828 0.74690 0.84986 0.82554 0.85991 0.89659 0.90038 0.88641 0.91378 0.84185 0.84006 0.91713 0.94366 0.97652 0.98654 0.92891 0.85472 0.83371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.11 10.70 127.77 1.37 2.48 16 2 N -0.72 -12.15 5.66 -487.46 -2.76 -14.91 16 3 C 0.55 13.60 7.77 86.79 0.67 14.27 16 4 O -0.58 -18.61 16.35 -3.88 -0.06 -18.68 16 5 C -0.15 -3.44 5.87 -20.09 -0.12 -3.56 16 6 C -0.07 -1.65 9.60 22.53 0.22 -1.43 16 7 C -0.11 -1.97 9.68 22.23 0.22 -1.75 16 8 C -0.08 -1.61 5.47 -19.81 -0.11 -1.72 16 9 C 0.15 2.60 5.53 85.64 0.47 3.07 16 10 N -0.60 -13.12 2.86 -851.11 -2.43 -15.55 16 11 C 0.06 1.08 9.85 127.77 1.26 2.34 16 12 C 0.49 14.01 6.91 87.66 0.61 14.62 16 13 O -0.57 -18.69 15.36 -3.01 -0.05 -18.74 16 14 C 0.09 2.74 2.31 44.17 0.10 2.85 16 15 H 0.11 3.22 7.21 -2.39 -0.02 3.21 16 16 N -0.82 -26.95 8.44 -171.80 -1.45 -28.40 16 17 C -0.08 -3.15 4.45 30.59 0.14 -3.01 16 18 C 0.04 2.19 4.86 29.85 0.15 2.34 16 19 C -0.54 -30.81 9.11 25.60 0.23 -30.57 16 20 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 21 C 0.01 0.30 5.46 84.65 0.46 0.76 16 22 N -0.93 -56.22 13.29 21.45 0.28 -55.94 16 23 Si 0.95 44.48 29.54 68.60 2.03 46.51 16 24 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 25 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 26 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 27 C -0.12 -2.51 9.68 22.23 0.22 -2.30 16 28 C -0.08 -1.66 9.54 22.53 0.21 -1.44 16 29 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.11 0.69 8.14 -2.38 -0.02 0.67 16 32 H 0.42 4.56 6.86 -92.70 -0.64 3.92 16 33 H 0.13 2.94 7.65 -2.91 -0.02 2.92 16 34 H 0.16 1.88 8.06 -2.91 -0.02 1.86 16 35 H 0.12 1.29 8.01 -2.39 -0.02 1.27 16 36 H 0.09 1.67 7.36 -2.39 -0.02 1.65 16 37 H 0.08 1.11 8.14 -2.39 -0.02 1.10 16 38 H 0.09 1.24 8.07 -2.38 -0.02 1.22 16 39 H 0.07 1.56 4.83 -2.39 -0.01 1.55 16 40 H 0.34 11.58 8.58 -89.69 -0.77 10.81 16 41 H 0.35 9.66 9.06 -89.69 -0.81 8.85 16 42 H 0.06 2.43 6.43 -2.39 -0.02 2.42 16 43 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.01 0.29 7.75 -2.39 -0.02 0.27 16 45 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 46 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 47 H 0.13 2.94 7.58 -2.91 -0.02 2.92 16 48 H 0.15 1.99 6.41 -2.91 -0.02 1.97 16 Total: -1.00 -77.60 398.38 0.44 -77.16 By element: Atomic # 1 Polarization: 32.81 SS G_CDS: -1.21 Total: 31.59 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: 6.09 Total: -3.06 kcal Atomic # 7 Polarization: -108.43 SS G_CDS: -6.36 Total: -114.79 kcal Atomic # 8 Polarization: -37.30 SS G_CDS: -0.11 Total: -37.41 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -77.60 0.44 -77.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325739894.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.973 kcal (2) G-P(sol) polarization free energy of solvation -77.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds