Wall clock time and date at job start Tue Mar 31 2020 17:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34777 * 119.99748 * 2 1 4 4 O 1.21281 * 119.99928 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99848 * 180.02562 * 3 2 1 6 6 C 1.50705 * 109.47133 * 180.02562 * 5 3 2 7 7 C 1.38132 * 120.03573 * 265.02736 * 6 5 3 8 8 C 1.38257 * 120.06856 * 179.97438 * 7 6 5 9 9 C 1.38309 * 120.14190 * 359.78423 * 8 7 6 10 10 C 1.38089 * 120.07013 * 0.46507 * 9 8 7 11 11 C 1.38846 * 120.03467 * 85.00238 * 6 5 3 12 12 N 1.39930 * 120.07103 * 0.02562 * 11 6 5 13 13 C 1.34772 * 120.00191 * 145.32122 * 12 11 6 14 14 O 1.21286 * 119.99916 * 4.49354 * 13 12 11 15 15 C 1.50708 * 120.00112 * 184.49243 * 13 12 11 16 16 H 1.08997 * 109.46638 * 319.99873 * 15 13 12 17 17 N 1.46897 * 109.46906 * 200.00128 * 15 13 12 18 18 C 1.52996 * 109.46727 * 79.99807 * 15 13 12 19 19 C 1.53008 * 109.46493 * 185.00003 * 18 15 13 20 20 C 1.53009 * 109.46873 * 180.02562 * 19 18 15 21 21 C 1.50700 * 109.46903 * 180.02562 * 20 19 18 22 22 H 1.07999 * 119.99761 * 359.97438 * 21 20 19 23 23 C 1.37870 * 119.99509 * 179.97438 * 21 20 19 24 24 N 1.31516 * 120.00340 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99870 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47219 * 89.99785 * 25 23 21 27 27 H 1.48498 * 109.47259 * 210.00014 * 25 23 21 28 28 H 1.48496 * 109.47169 * 330.00007 * 25 23 21 29 29 H 1.09003 * 109.47262 * 299.99648 * 1 2 3 30 30 H 1.09004 * 109.47523 * 59.99397 * 1 2 3 31 31 H 1.09007 * 109.46976 * 179.97438 * 1 2 3 32 32 H 0.96998 * 120.00058 * 180.02562 * 2 1 3 33 33 H 1.09003 * 109.47217 * 60.00317 * 5 3 2 34 34 H 1.08994 * 109.47565 * 300.00069 * 5 3 2 35 35 H 1.08000 * 119.96453 * 359.96907 * 7 6 5 36 36 H 1.08000 * 119.93167 * 179.97438 * 8 7 6 37 37 H 1.07999 * 119.96370 * 180.26083 * 9 8 7 38 38 H 1.07998 * 120.03471 * 179.78966 * 10 9 8 39 39 H 0.97009 * 119.99753 * 325.31912 * 12 11 6 40 40 H 1.00903 * 110.99787 * 176.04431 * 17 15 13 41 41 H 1.00904 * 111.00314 * 299.99811 * 17 15 13 42 42 H 1.08996 * 109.47747 * 304.99857 * 18 15 13 43 43 H 1.09000 * 109.47063 * 65.00828 * 18 15 13 44 44 H 1.08993 * 109.47085 * 299.99781 * 19 18 15 45 45 H 1.08995 * 109.47114 * 60.00317 * 19 18 15 46 46 H 1.09003 * 109.46537 * 300.00140 * 20 19 18 47 47 H 1.09001 * 109.46906 * 59.99814 * 20 19 18 48 48 H 0.97003 * 119.99842 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5323 2.2175 0.0005 5 6 3.6458 1.1673 -0.0006 6 6 4.1481 2.5881 0.0002 7 6 4.4758 3.2062 -1.1909 8 6 4.9362 4.5099 -1.1910 9 6 5.0660 5.2008 0.0001 10 6 4.7449 4.5868 1.1946 11 6 4.2815 3.2774 1.1980 12 7 3.9504 2.6541 2.4063 13 6 4.6528 2.9318 3.5225 14 8 5.5181 3.7813 3.4988 15 6 4.3630 2.1868 4.8001 16 1 3.2864 2.0537 4.9068 17 7 4.8771 2.9546 5.9420 18 6 5.0445 0.8176 4.7577 19 6 4.6492 0.0128 5.9975 20 6 5.3312 -1.3563 5.9555 21 6 4.9414 -2.1493 7.1763 22 1 4.2744 -1.7196 7.9090 23 6 5.4364 -3.4232 7.3577 24 7 6.2482 -3.9466 6.4652 25 14 4.9538 -4.4060 8.8713 26 1 3.7275 -5.1915 8.5812 27 1 6.0586 -5.3292 9.2350 28 1 4.6917 -3.4784 10.0009 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.9500 -0.8400 -0.0004 33 1 4.0088 0.6537 -0.8909 34 1 4.0095 0.6533 0.8891 35 1 4.3724 2.6706 -2.1229 36 1 5.1922 4.9909 -2.1235 37 1 5.4219 6.2204 -0.0037 38 1 4.8496 5.1256 2.1247 39 1 3.2152 2.0222 2.4405 40 1 4.6386 2.5079 6.8148 41 1 5.8739 3.0916 5.8664 42 1 4.7298 0.2826 3.8617 43 1 6.1262 0.9506 4.7405 44 1 4.9639 0.5477 6.8935 45 1 3.5675 -0.1202 6.0147 46 1 5.0168 -1.8914 5.0594 47 1 6.4129 -1.2230 5.9384 48 1 6.5961 -4.8430 6.5927 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329098848.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:21 Heat of formation + Delta-G solvation = -63.693219 kcal Electronic energy + Delta-G solvation = -28485.467344 eV Core-core repulsion = 24539.396238 eV Total energy + Delta-G solvation = -3946.071106 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.96356 -39.80098 -38.59190 -36.14149 -34.92283 -34.80736 -33.43305 -32.93472 -31.31917 -30.05240 -28.74116 -27.80512 -26.15595 -25.43316 -23.31099 -22.35400 -21.69068 -20.59843 -20.28837 -20.10400 -17.98724 -17.44351 -17.38225 -16.49743 -16.38779 -15.93497 -15.54558 -15.26966 -15.12277 -14.87704 -14.57358 -14.38269 -14.14986 -14.06353 -13.68423 -13.46513 -13.30508 -13.22917 -12.64304 -12.55380 -12.49615 -12.31026 -12.11547 -11.90887 -11.59024 -11.38713 -11.29663 -10.88699 -10.77825 -10.62803 -10.38353 -10.21919 -9.87854 -9.78577 -9.45663 -9.43590 -9.20544 -8.85112 -8.56716 -8.43468 -8.16883 -6.08773 -4.11855 1.17063 1.34336 2.35112 2.59657 2.91304 2.96583 3.25434 3.32454 3.35502 3.75370 4.37875 4.38197 4.60909 4.62505 4.65433 4.74692 4.97715 4.99682 5.03722 5.11808 5.16581 5.20903 5.21749 5.27282 5.33188 5.50797 5.54812 5.56625 5.66207 5.85678 5.93260 6.06515 6.16023 6.20499 6.30555 6.41710 6.48271 6.50580 6.64863 6.94096 6.97075 7.07286 7.15241 7.32898 7.53129 7.55843 7.68058 7.89966 7.92786 8.08615 8.31852 8.95178 9.53038 11.02344 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011090 B = 0.002821 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.228014 B = 9923.340673 C =11503.623205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.737 5.737 3 C 0.508 3.492 4 O -0.527 6.527 5 C -0.106 4.106 6 C -0.096 4.096 7 C -0.090 4.090 8 C -0.138 4.138 9 C -0.102 4.102 10 C -0.121 4.121 11 C 0.168 3.832 12 N -0.674 5.674 13 C 0.524 3.476 14 O -0.512 6.512 15 C 0.077 3.923 16 H 0.101 0.899 17 N -0.829 5.829 18 C -0.146 4.146 19 C -0.109 4.109 20 C 0.023 3.977 21 C -0.523 4.523 22 H 0.055 0.945 23 C 0.057 3.943 24 N -0.895 5.895 25 Si 0.892 3.108 26 H -0.280 1.280 27 H -0.286 1.286 28 H -0.274 1.274 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.405 0.595 33 H 0.108 0.892 34 H 0.104 0.896 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.124 0.876 38 H 0.141 0.859 39 H 0.408 0.592 40 H 0.354 0.646 41 H 0.350 0.650 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.049 0.951 45 H 0.051 0.949 46 H 0.015 0.985 47 H 0.015 0.985 48 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.373 10.826 -16.785 21.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.389 5.389 3 C 0.294 3.706 4 O -0.403 6.403 5 C -0.145 4.145 6 C -0.099 4.099 7 C -0.109 4.109 8 C -0.156 4.156 9 C -0.120 4.120 10 C -0.141 4.141 11 C 0.073 3.927 12 N -0.319 5.319 13 C 0.312 3.688 14 O -0.385 6.385 15 C -0.038 4.038 16 H 0.119 0.881 17 N -0.362 5.362 18 C -0.186 4.186 19 C -0.147 4.147 20 C -0.014 4.014 21 C -0.561 4.561 22 H 0.073 0.927 23 C -0.144 4.144 24 N -0.534 5.534 25 Si 0.719 3.281 26 H -0.206 1.206 27 H -0.212 1.212 28 H -0.198 1.198 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.238 0.762 33 H 0.126 0.874 34 H 0.122 0.878 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.158 0.842 39 H 0.244 0.756 40 H 0.169 0.831 41 H 0.164 0.836 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.068 0.932 45 H 0.070 0.930 46 H 0.033 0.967 47 H 0.033 0.967 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.571 12.616 -16.991 22.476 hybrid contribution 0.141 -2.430 0.946 2.611 sum -7.430 10.186 -16.045 20.406 Atomic orbital electron populations 1.21551 0.79465 1.02398 1.02335 1.45848 1.07949 1.08829 1.76311 1.20696 0.89961 0.83765 0.76174 1.90755 1.70233 1.31103 1.48169 1.20635 0.92049 0.95969 1.05890 1.19005 1.03846 0.94342 0.92681 1.20733 0.98598 0.95154 0.96417 1.21038 1.01683 0.94832 0.98092 1.21051 0.99175 0.99797 0.92010 1.21285 1.00420 0.92876 0.99491 1.17521 0.98923 0.91687 0.84546 1.43578 1.35194 1.45690 1.07422 1.20952 0.80584 0.82592 0.84659 1.90655 1.31903 1.31608 1.84347 1.21430 1.01477 0.91918 0.89018 0.88111 1.58679 1.20982 1.52799 1.03703 1.22422 1.00874 0.93921 1.01408 1.21663 1.00338 0.98357 0.94306 1.19072 0.95636 0.89576 0.97119 1.21237 1.28536 0.99572 1.06783 0.92674 1.25024 0.95045 0.97826 0.96511 1.69960 1.32421 1.16032 1.35001 0.86601 0.78123 0.80031 0.83304 1.20646 1.21181 1.19841 0.92079 0.92323 0.90500 0.76150 0.87367 0.87787 0.85994 0.86082 0.85851 0.84170 0.75620 0.83099 0.83602 0.91710 0.91524 0.93206 0.93005 0.96680 0.96671 0.92947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.59 10.70 59.85 0.64 1.23 16 2 N -0.74 -5.44 5.71 -67.08 -0.38 -5.82 16 3 C 0.51 5.13 7.52 -10.99 -0.08 5.05 16 4 O -0.53 -7.46 16.03 5.56 0.09 -7.37 16 5 C -0.11 -0.92 5.24 -29.03 -0.15 -1.07 16 6 C -0.10 -1.10 4.39 -104.43 -0.46 -1.56 16 7 C -0.09 -0.95 9.68 -39.61 -0.38 -1.33 16 8 C -0.14 -1.42 10.04 -39.55 -0.40 -1.82 16 9 C -0.10 -1.17 10.04 -39.61 -0.40 -1.57 16 10 C -0.12 -1.66 8.70 -39.39 -0.34 -2.01 16 11 C 0.17 2.24 6.29 -83.69 -0.53 1.72 16 12 N -0.67 -8.54 4.78 -9.86 -0.05 -8.58 16 13 C 0.52 7.59 6.92 -10.98 -0.08 7.52 16 14 O -0.51 -8.77 13.66 5.55 0.08 -8.69 16 15 C 0.08 1.04 3.21 -68.86 -0.22 0.82 16 16 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 17 N -0.83 -11.30 8.94 -5.66 -0.05 -11.35 16 18 C -0.15 -2.22 4.84 -26.73 -0.13 -2.35 16 19 C -0.11 -1.99 4.92 -26.72 -0.13 -2.12 16 20 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 21 C -0.52 -14.20 9.11 -34.44 -0.31 -14.52 16 22 H 0.06 1.45 7.74 -52.49 -0.41 1.05 16 23 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 24 N -0.89 -26.12 13.29 55.43 0.74 -25.39 16 25 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 26 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 27 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 28 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.40 1.94 8.83 -40.82 -0.36 1.58 16 33 H 0.11 0.67 8.05 -51.93 -0.42 0.25 16 34 H 0.10 0.84 7.43 -51.93 -0.39 0.46 16 35 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 37 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 38 H 0.14 2.11 6.20 -52.49 -0.33 1.78 16 39 H 0.41 4.50 7.68 -40.82 -0.31 4.19 16 40 H 0.35 4.50 7.55 -39.29 -0.30 4.20 16 41 H 0.35 4.91 8.58 -39.29 -0.34 4.57 16 42 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.05 0.89 6.87 -51.93 -0.36 0.53 16 45 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 46 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.26 7.19 8.31 -40.82 -0.34 6.86 16 LS Contribution 400.00 15.07 6.03 6.03 Total: -1.00 -34.78 400.00 -9.19 -43.97 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: -7.41 Total: 11.30 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: -3.21 Total: -10.10 kcal Atomic # 7 Polarization: -51.40 SS G_CDS: 0.26 Total: -51.15 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: 0.16 Total: -16.06 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.78 -9.19 -43.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329098848.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.725 kcal (2) G-P(sol) polarization free energy of solvation -34.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds