Wall clock time and date at job start Tue Mar 31 2020 17:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35916 * 117.00169 * 2 1 4 4 C 1.39142 * 120.47650 * 179.97438 * 3 2 1 5 5 C 1.38528 * 118.37532 * 180.02562 * 4 3 2 6 6 C 1.38262 * 119.22001 * 0.02562 * 5 4 3 7 7 C 1.50706 * 119.55310 * 179.97438 * 6 5 4 8 8 C 1.50703 * 109.46820 * 124.99734 * 7 6 5 9 9 O 1.21283 * 120.00111 * 0.02562 * 8 7 6 10 10 N 1.34772 * 119.99767 * 179.97438 * 8 7 6 11 11 C 1.46495 * 120.00232 * 0.02562 * 10 8 7 12 12 C 1.46504 * 120.00086 * 180.02562 * 10 8 7 13 13 H 1.09006 * 109.46710 * 0.02562 * 12 10 8 14 14 C 1.53002 * 109.47167 * 240.00862 * 12 10 8 15 15 N 1.46495 * 109.47451 * 54.99412 * 14 12 10 16 16 C 1.36938 * 119.99951 * 179.97438 * 15 14 12 17 17 H 1.07998 * 119.99927 * 0.02562 * 16 15 14 18 18 C 1.38814 * 119.99715 * 180.02562 * 16 15 14 19 19 N 1.31626 * 119.99616 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 120.00226 * 0.02562 * 18 16 15 21 21 H 1.48505 * 109.47077 * 89.99913 * 20 18 16 22 22 H 1.48502 * 109.47118 * 209.99727 * 20 18 16 23 23 H 1.48496 * 109.47122 * 329.99924 * 20 18 16 24 24 C 1.52998 * 109.47312 * 120.00298 * 12 10 8 25 25 C 1.52997 * 117.49944 * 248.74847 * 24 12 10 26 26 C 1.53002 * 117.49930 * 180.08811 * 24 12 10 27 27 N 1.31846 * 120.88842 * 0.25004 * 6 5 4 28 28 C 1.31846 * 121.77486 * 359.48047 * 27 6 5 29 29 H 1.09001 * 109.47386 * 300.00385 * 1 2 3 30 30 H 1.09002 * 109.46848 * 60.00474 * 1 2 3 31 31 H 1.09000 * 109.47305 * 179.97438 * 1 2 3 32 32 H 1.08003 * 120.81029 * 359.97438 * 4 3 2 33 33 H 1.08004 * 120.39430 * 180.02562 * 5 4 3 34 34 H 1.08999 * 109.47057 * 244.99792 * 7 6 5 35 35 H 1.09000 * 109.47142 * 5.00033 * 7 6 5 36 36 H 1.09004 * 109.47387 * 89.99167 * 11 10 8 37 37 H 1.08999 * 109.47289 * 209.99562 * 11 10 8 38 38 H 1.09004 * 109.47104 * 329.99735 * 11 10 8 39 39 H 1.09001 * 109.46963 * 174.99888 * 14 12 10 40 40 H 1.09006 * 109.46554 * 294.99352 * 14 12 10 41 41 H 0.97002 * 120.00091 * 0.02562 * 15 14 12 42 42 H 0.96997 * 119.99548 * 180.02562 * 19 18 16 43 43 H 1.09000 * 115.54460 * 34.42064 * 24 12 10 44 44 H 1.09000 * 117.49712 * 0.02562 * 25 24 12 45 45 H 1.09006 * 117.49573 * 145.01588 * 25 24 12 46 46 H 1.08993 * 117.49254 * 214.97890 * 26 24 12 47 47 H 1.08997 * 117.49670 * 359.97438 * 26 24 12 48 48 H 1.07999 * 119.64941 * 180.26880 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 3.4349 1.2953 0.0005 5 6 4.0182 2.5518 0.0011 6 6 3.2078 3.6721 0.0016 7 6 3.8344 5.0427 0.0027 8 6 3.3025 5.8392 -1.1608 9 8 2.4938 5.3428 -1.9163 10 7 3.7246 7.1033 -1.3613 11 6 4.7009 7.7030 -0.4484 12 6 3.2071 7.8778 -2.4921 13 1 2.4971 7.2705 -3.0537 14 6 4.3658 8.2837 -3.4051 15 7 5.1119 7.0891 -3.8079 16 6 6.1993 7.2064 -4.6318 17 1 6.5071 8.1797 -4.9844 18 6 6.9059 6.0743 -5.0139 19 7 7.9514 6.1872 -5.8055 20 14 6.3730 4.3908 -4.4047 21 1 5.4007 3.8032 -5.3611 22 1 7.5598 3.5045 -4.2981 23 1 5.7350 4.5263 -3.0707 24 6 2.5040 9.1329 -1.9714 25 6 0.9842 9.2085 -2.1301 26 6 1.8896 10.0788 -3.0053 27 7 1.8944 3.5574 0.0065 28 6 1.3002 2.3804 0.0010 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 4.0433 0.4030 0.0014 33 1 5.0932 2.6552 0.0011 34 1 3.5901 5.5531 0.9344 35 1 4.9166 4.9476 -0.0866 36 1 5.7089 7.5024 -0.8116 37 1 4.5396 8.7799 -0.4003 38 1 4.5807 7.2728 0.5459 39 1 3.9727 8.7826 -4.2910 40 1 5.0292 8.9632 -2.8698 41 1 4.8352 6.2148 -3.4915 42 1 8.4450 5.3961 -6.0728 43 1 2.9396 9.5790 -1.0773 44 1 0.4851 8.3638 -2.6050 45 1 0.4198 9.7047 -1.3404 46 1 1.9206 11.1470 -2.7911 47 1 1.9867 9.8070 -4.0564 48 1 0.2216 2.3265 0.0009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331316561.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:23 Heat of formation + Delta-G solvation = 16.692718 kcal Electronic energy + Delta-G solvation = -29337.801523 eV Core-core repulsion = 25395.216213 eV Total energy + Delta-G solvation = -3942.585310 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.86336 -39.84441 -38.39597 -37.41342 -35.20108 -34.12526 -32.50328 -32.48717 -31.32306 -29.08632 -28.05024 -27.18370 -26.45572 -24.18600 -23.49909 -22.49573 -22.26219 -21.32573 -20.20835 -18.95915 -18.32628 -17.56769 -17.36543 -16.90600 -16.32735 -16.04445 -15.83124 -15.41716 -14.71377 -14.61392 -14.34981 -14.25812 -14.02898 -13.85831 -13.44605 -13.11773 -13.08475 -12.79349 -12.67251 -12.55367 -12.21784 -12.10103 -12.05304 -11.95211 -11.73376 -11.52112 -11.49715 -11.22459 -10.88549 -10.71816 -10.33855 -10.14348 -9.81614 -9.79364 -9.56256 -9.54669 -9.35955 -8.86837 -8.45430 -8.28875 -7.18822 -5.74646 -3.08800 1.01314 1.21112 2.93883 2.97217 3.16034 3.39400 3.46257 3.50548 3.72454 3.93586 4.21260 4.51140 4.56255 4.62695 4.67611 4.73379 4.84508 4.86493 5.01770 5.02304 5.07945 5.14435 5.23438 5.24437 5.34246 5.38001 5.39359 5.53311 5.54976 5.61947 5.69853 5.73656 5.77906 5.86729 5.94560 5.99023 6.01453 6.05574 6.21692 6.25919 6.36483 6.43832 6.68609 6.93456 7.00242 7.66530 7.95339 8.02249 8.44553 8.51320 9.24946 9.97957 10.18736 11.43784 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009274 B = 0.004267 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3018.436292 B = 6560.995395 C = 8628.642051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.314 6.314 3 C 0.069 3.931 4 C -0.108 4.108 5 C -0.124 4.124 6 C 0.110 3.890 7 C -0.087 4.087 8 C 0.522 3.478 9 O -0.525 6.525 10 N -0.600 5.600 11 C 0.076 3.924 12 C 0.160 3.840 13 H 0.100 0.900 14 C 0.153 3.847 15 N -0.752 5.752 16 C -0.240 4.240 17 H 0.090 0.910 18 C 0.006 3.994 19 N -0.935 5.935 20 Si 0.881 3.119 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.278 1.278 24 C -0.158 4.158 25 C -0.178 4.178 26 C -0.170 4.170 27 N -0.420 5.420 28 C 0.024 3.976 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.101 0.899 32 H 0.143 0.857 33 H 0.143 0.857 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.036 0.964 40 H 0.030 0.970 41 H 0.363 0.637 42 H 0.259 0.741 43 H 0.106 0.894 44 H 0.094 0.906 45 H 0.090 0.910 46 H 0.094 0.906 47 H 0.099 0.901 48 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.737 -3.552 17.828 22.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.226 6.226 3 C 0.022 3.978 4 C -0.134 4.134 5 C -0.144 4.144 6 C -0.029 4.029 7 C -0.128 4.128 8 C 0.309 3.691 9 O -0.401 6.401 10 N -0.333 5.333 11 C -0.067 4.067 12 C 0.057 3.943 13 H 0.118 0.882 14 C 0.025 3.975 15 N -0.398 5.398 16 C -0.370 4.370 17 H 0.108 0.892 18 C -0.189 4.189 19 N -0.583 5.583 20 Si 0.712 3.288 21 H -0.212 1.212 22 H -0.218 1.218 23 H -0.204 1.204 24 C -0.177 4.177 25 C -0.215 4.215 26 C -0.208 4.208 27 N -0.129 5.129 28 C -0.135 4.135 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.120 0.880 32 H 0.160 0.840 33 H 0.161 0.839 34 H 0.127 0.873 35 H 0.127 0.873 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.054 0.946 40 H 0.048 0.952 41 H 0.196 0.804 42 H 0.069 0.931 43 H 0.124 0.876 44 H 0.113 0.887 45 H 0.108 0.892 46 H 0.112 0.888 47 H 0.117 0.883 48 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -14.420 -3.181 17.284 22.733 hybrid contribution 0.122 -1.850 0.323 1.882 sum -14.297 -5.031 17.607 23.232 Atomic orbital electron populations 1.23105 0.78112 1.04183 1.01670 1.86058 1.21584 1.26199 1.88752 1.20078 0.93280 0.85708 0.98732 1.20857 0.91669 0.98723 1.02171 1.21856 1.01521 0.91708 0.99310 1.20471 0.89229 0.94372 0.98832 1.20591 1.01406 0.91637 0.99128 1.20149 0.81466 0.81384 0.86108 1.90705 1.33359 1.69227 1.46788 1.47622 1.43608 1.13205 1.28893 1.21789 0.93165 0.99235 0.92491 1.20935 0.96446 0.90362 0.86584 0.88240 1.20907 0.91184 0.90443 0.94967 1.42654 1.34193 1.03544 1.59391 1.19050 1.02406 0.95371 1.20171 0.89206 1.24620 0.97565 0.97117 0.99648 1.69703 1.20800 1.28544 1.39240 0.86597 0.77374 0.85895 0.78962 1.21187 1.21753 1.20450 1.22511 0.95288 0.98647 1.01300 1.23003 0.92747 1.02803 1.02900 1.22939 1.03754 0.96780 0.97296 1.67281 1.11399 1.26195 1.07997 1.22839 1.00359 0.86989 1.03284 0.92459 0.92310 0.88017 0.83958 0.83913 0.87288 0.87274 0.91532 0.90995 0.91601 0.94584 0.95240 0.80423 0.93132 0.87606 0.88750 0.89189 0.88778 0.88282 0.82710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.82 101.05 0.99 1.17 16 2 O -0.31 -3.54 10.51 -19.47 -0.20 -3.74 16 3 C 0.07 0.89 6.71 -39.07 -0.26 0.63 16 4 C -0.11 -1.35 10.13 -39.14 -0.40 -1.75 16 5 C -0.12 -1.63 9.70 -39.47 -0.38 -2.02 16 6 C 0.11 1.64 5.76 -82.57 -0.48 1.17 16 7 C -0.09 -1.18 4.65 -29.03 -0.14 -1.32 16 8 C 0.52 9.10 7.31 -10.99 -0.08 9.02 16 9 O -0.53 -11.24 14.67 5.55 0.08 -11.16 16 10 N -0.60 -9.48 2.24 -173.93 -0.39 -9.87 16 11 C 0.08 0.92 9.38 59.84 0.56 1.48 16 12 C 0.16 2.68 2.42 -67.93 -0.16 2.51 16 13 H 0.10 1.93 6.66 -51.93 -0.35 1.58 16 14 C 0.15 3.01 5.32 -4.04 -0.02 2.99 16 15 N -0.75 -18.53 5.24 -59.91 -0.31 -18.84 16 16 C -0.24 -6.92 10.47 -15.06 -0.16 -7.08 16 17 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 18 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 19 N -0.93 -29.79 13.97 55.49 0.78 -29.02 16 20 Si 0.88 23.34 27.74 -169.99 -4.71 18.62 16 21 H -0.29 -7.78 7.11 56.52 0.40 -7.38 16 22 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 23 H -0.28 -7.01 6.52 56.52 0.37 -6.64 16 24 C -0.16 -2.07 5.15 -90.62 -0.47 -2.53 16 25 C -0.18 -2.15 10.18 -26.69 -0.27 -2.42 16 26 C -0.17 -2.02 9.80 -26.69 -0.26 -2.28 16 27 N -0.42 -6.66 9.23 -9.34 -0.09 -6.74 16 28 C 0.02 0.33 10.22 -17.37 -0.18 0.15 16 29 H 0.06 0.34 7.68 -51.93 -0.40 -0.06 16 30 H 0.06 0.41 7.68 -51.93 -0.40 0.01 16 31 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.14 1.46 8.06 -52.48 -0.42 1.04 16 33 H 0.14 1.54 7.95 -52.48 -0.42 1.13 16 34 H 0.11 1.14 7.40 -51.93 -0.38 0.76 16 35 H 0.11 1.30 7.83 -51.93 -0.41 0.89 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.07 0.75 6.43 -51.93 -0.33 0.42 16 38 H 0.07 0.59 6.44 -51.93 -0.33 0.26 16 39 H 0.04 0.72 7.48 -51.93 -0.39 0.33 16 40 H 0.03 0.57 7.84 -51.93 -0.41 0.16 16 41 H 0.36 9.18 4.93 -40.82 -0.20 8.98 16 42 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 43 H 0.11 1.23 6.59 -51.93 -0.34 0.89 16 44 H 0.09 1.25 8.05 -51.93 -0.42 0.84 16 45 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.10 1.26 7.66 -51.93 -0.40 0.86 16 48 H 0.16 1.67 6.32 -52.49 -0.33 1.33 16 LS Contribution 390.76 15.07 5.89 5.89 Total: -1.00 -37.42 390.76 -7.97 -45.39 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -7.21 Total: 9.67 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: -1.80 Total: -0.20 kcal Atomic # 7 Polarization: -64.46 SS G_CDS: -0.02 Total: -64.48 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: -0.12 Total: -14.90 kcal Atomic # 14 Polarization: 23.34 SS G_CDS: -4.71 Total: 18.62 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -37.42 -7.97 -45.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331316561.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.086 kcal (2) G-P(sol) polarization free energy of solvation -37.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds