Wall clock time and date at job start Tue Mar 31 2020 17:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34780 * 119.99913 * 2 1 4 4 O 1.21276 * 120.00122 * 359.97438 * 3 2 1 5 5 C 1.50695 * 119.99967 * 179.97438 * 3 2 1 6 6 C 1.53000 * 109.47109 * 179.97438 * 5 3 2 7 7 C 1.53004 * 109.47076 * 180.02562 * 6 5 3 8 8 C 1.53000 * 109.47076 * 179.97438 * 7 6 5 9 9 C 1.50705 * 109.47119 * 179.97438 * 8 7 6 10 10 O 1.21284 * 119.99679 * 359.97438 * 9 8 7 11 11 N 1.34772 * 119.99725 * 179.97438 * 9 8 7 12 12 C 1.46497 * 120.00210 * 0.02562 * 11 9 8 13 13 C 1.50702 * 109.46673 * 252.75285 * 12 11 9 14 14 H 1.08004 * 120.00117 * 234.30133 * 13 12 11 15 15 C 1.37871 * 119.99962 * 54.31212 * 13 12 11 16 16 N 1.31513 * 120.00141 * 4.81880 * 15 13 12 17 17 Si 1.86804 * 119.99918 * 184.82351 * 15 13 12 18 18 H 1.48501 * 109.47023 * 89.99482 * 17 15 13 19 19 H 1.48504 * 109.47070 * 209.99434 * 17 15 13 20 20 H 1.48500 * 109.47235 * 329.99418 * 17 15 13 21 21 C 1.46499 * 119.99801 * 179.97438 * 11 9 8 22 22 C 1.50697 * 109.47535 * 274.73306 * 21 11 9 23 23 C 1.38671 * 120.41651 * 274.86110 * 22 21 11 24 24 C 1.38627 * 118.42102 * 179.78281 * 23 22 21 25 25 C 1.38224 * 119.16103 * 0.51161 * 24 23 22 26 26 N 1.31854 * 120.76429 * 359.72882 * 25 24 23 27 27 C 1.31880 * 121.72389 * 359.97438 * 26 25 24 28 28 H 1.09002 * 109.47119 * 60.00388 * 1 2 3 29 29 H 1.08999 * 109.46789 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47306 * 300.00063 * 1 2 3 31 31 H 0.97006 * 120.00300 * 179.97438 * 2 1 3 32 32 H 1.09006 * 109.47177 * 59.99433 * 5 3 2 33 33 H 1.09002 * 109.47165 * 299.99692 * 5 3 2 34 34 H 1.08993 * 109.47121 * 60.00370 * 6 5 3 35 35 H 1.08998 * 109.47356 * 299.99595 * 6 5 3 36 36 H 1.09006 * 109.47201 * 59.99720 * 7 6 5 37 37 H 1.09002 * 109.47173 * 299.99959 * 7 6 5 38 38 H 1.08995 * 109.46875 * 59.99888 * 8 7 6 39 39 H 1.09002 * 109.47085 * 300.00012 * 8 7 6 40 40 H 1.08999 * 109.46879 * 132.75768 * 12 11 9 41 41 H 1.08992 * 109.47472 * 12.75567 * 12 11 9 42 42 H 0.97007 * 120.00110 * 175.00739 * 16 15 13 43 43 H 1.09006 * 109.47094 * 34.73214 * 21 11 9 44 44 H 1.08997 * 109.47591 * 154.72534 * 21 11 9 45 45 H 1.08007 * 120.79129 * 0.02562 * 23 22 21 46 46 H 1.08005 * 120.41945 * 180.22293 * 24 23 22 47 47 H 1.08006 * 119.62110 * 179.74691 * 25 24 23 48 48 H 1.08001 * 119.62014 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6458 1.1673 0.0006 6 6 4.1558 2.6098 -0.0002 7 6 5.6859 2.6098 -0.0002 8 6 6.1958 4.0523 -0.0017 9 6 7.7029 4.0523 -0.0011 10 8 8.3093 3.0019 0.0008 11 7 8.3767 5.2195 -0.0026 12 6 7.6442 6.4882 -0.0043 13 6 7.7579 7.1319 -1.3622 14 1 8.1228 8.1446 -1.4509 15 6 7.3958 6.4283 -2.4912 16 7 6.8627 5.2315 -2.3773 17 14 7.6626 7.1749 -4.1826 18 1 9.0095 6.7993 -4.6826 19 1 6.6276 6.6651 -5.1176 20 1 7.5627 8.6538 -4.0923 21 6 9.8417 5.2195 -0.0015 22 6 10.3430 5.1048 1.4150 23 6 10.4809 6.2363 2.2047 24 6 10.9413 6.0826 3.5032 25 6 11.2556 4.8167 3.9609 26 7 11.1168 3.7634 3.1800 27 6 10.6761 3.8715 1.9417 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.9501 -0.8401 0.0004 32 1 4.0095 0.6531 -0.8891 33 1 4.0088 0.6537 0.8909 34 1 3.7922 3.1241 0.8893 35 1 3.7929 3.1230 -0.8907 36 1 6.0492 2.0954 -0.8900 37 1 6.0492 2.0964 0.8900 38 1 5.8325 4.5669 0.8878 39 1 5.8325 4.5652 -0.8921 40 1 8.0667 7.1526 0.7493 41 1 6.5945 6.3020 0.2228 42 1 6.5415 4.7665 -3.1658 43 1 10.2055 4.3739 -0.5852 44 1 10.2054 6.1480 -0.4416 45 1 10.2317 7.2138 1.8186 46 1 11.0574 6.9415 4.1476 47 1 11.6189 4.6889 4.9700 48 1 10.5751 2.9859 1.3319 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338486549.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:30 Heat of formation + Delta-G solvation = -52.453222 kcal Electronic energy + Delta-G solvation = -28669.074873 eV Core-core repulsion = 24723.491170 eV Total energy + Delta-G solvation = -3945.583703 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.87948 -39.63735 -38.46568 -35.18575 -34.74616 -34.36943 -33.00626 -31.81205 -31.15204 -30.28213 -27.57241 -27.32881 -25.88481 -23.88304 -23.25859 -22.70534 -21.71935 -20.65295 -20.21649 -18.02392 -17.07482 -16.84699 -16.48322 -16.09478 -15.89334 -15.86865 -15.35502 -15.23041 -14.78557 -14.62964 -14.49514 -13.79992 -13.71703 -13.44115 -13.16719 -12.75740 -12.70237 -12.63174 -12.44935 -12.41545 -11.94145 -11.85791 -11.70511 -11.29389 -11.18277 -11.00415 -10.90546 -10.77489 -10.60275 -10.29982 -10.04982 -9.85540 -9.76671 -9.65806 -9.48042 -9.24253 -9.13059 -8.83756 -8.67847 -8.30676 -7.30016 -6.16772 -4.38698 1.44625 1.62195 2.67663 3.17218 3.18297 3.27685 3.28616 4.05152 4.07966 4.25209 4.55033 4.76804 4.79116 5.04994 5.09954 5.12790 5.23486 5.23989 5.33019 5.34086 5.36989 5.48111 5.58407 5.73323 5.76830 5.89357 5.91871 6.05981 6.20160 6.23768 6.27796 6.38958 6.42401 6.48663 6.54529 6.55512 6.68271 6.76956 6.80371 7.04726 7.07939 7.11665 7.37666 7.42183 7.69325 7.86904 8.04724 8.21530 8.30710 8.65442 8.88528 9.34153 9.61411 10.77321 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.008566 B = 0.003424 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3267.986170 B = 8174.787785 C =10755.666374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.744 5.744 3 C 0.510 3.490 4 O -0.536 6.536 5 C -0.139 4.139 6 C -0.101 4.101 7 C -0.095 4.095 8 C -0.149 4.149 9 C 0.551 3.449 10 O -0.596 6.596 11 N -0.579 5.579 12 C 0.228 3.772 13 C -0.543 4.543 14 H 0.061 0.939 15 C 0.079 3.921 16 N -0.871 5.871 17 Si 0.896 3.104 18 H -0.280 1.280 19 H -0.285 1.285 20 H -0.274 1.274 21 C 0.166 3.834 22 C -0.137 4.137 23 C -0.065 4.065 24 C -0.181 4.181 25 C 0.083 3.917 26 N -0.492 5.492 27 C 0.118 3.882 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.057 0.943 31 H 0.401 0.599 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.050 0.950 38 H 0.057 0.943 39 H 0.155 0.845 40 H 0.019 0.981 41 H 0.046 0.954 42 H 0.267 0.733 43 H 0.075 0.925 44 H 0.084 0.916 45 H 0.133 0.867 46 H 0.128 0.872 47 H 0.147 0.853 48 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.257 -6.547 6.652 9.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.397 5.397 3 C 0.297 3.703 4 O -0.412 6.412 5 C -0.179 4.179 6 C -0.139 4.139 7 C -0.133 4.133 8 C -0.188 4.188 9 C 0.343 3.657 10 O -0.479 6.479 11 N -0.308 5.308 12 C 0.108 3.892 13 C -0.581 4.581 14 H 0.079 0.921 15 C -0.125 4.125 16 N -0.509 5.509 17 Si 0.724 3.276 18 H -0.206 1.206 19 H -0.210 1.210 20 H -0.199 1.199 21 C 0.042 3.958 22 C -0.141 4.141 23 C -0.092 4.092 24 C -0.201 4.201 25 C -0.075 4.075 26 N -0.201 5.201 27 C -0.039 4.039 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.234 0.766 32 H 0.111 0.889 33 H 0.109 0.891 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.172 0.828 40 H 0.037 0.963 41 H 0.064 0.936 42 H 0.078 0.922 43 H 0.093 0.907 44 H 0.102 0.898 45 H 0.151 0.849 46 H 0.146 0.854 47 H 0.165 0.835 48 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -3.230 -7.262 6.854 10.496 hybrid contribution 0.007 0.848 -1.317 1.567 sum -3.223 -6.414 5.537 9.066 Atomic orbital electron populations 1.21495 0.80139 1.01844 1.02241 1.45913 1.07593 1.09015 1.77140 1.21058 0.90890 0.83286 0.75061 1.90707 1.70677 1.31313 1.48520 1.21731 0.90441 1.01444 1.04258 1.21353 0.95998 0.93268 1.03307 1.21252 0.92762 0.97415 1.01831 1.22166 0.92860 0.97488 1.06288 1.20280 0.90037 0.82524 0.72898 1.90483 1.71138 1.32111 1.54179 1.48276 1.03606 1.07793 1.71169 1.19355 0.92869 0.81449 0.95482 1.21525 1.45068 0.99810 0.91701 0.92121 1.24988 0.93792 0.94334 0.99391 1.69539 1.38875 1.12605 1.29853 0.86541 0.78121 0.79348 0.83617 1.20608 1.21043 1.19919 1.19878 0.83262 1.03087 0.89603 1.21647 0.98739 0.94052 0.99625 1.21566 0.95113 0.99148 0.93366 1.22056 1.02365 0.98860 0.96841 1.22646 0.97133 0.88505 0.99168 1.67697 1.13324 1.33557 1.05524 1.22865 0.92669 0.97299 0.91067 0.92369 0.90954 0.92420 0.76552 0.88867 0.89075 0.91823 0.91067 0.91812 0.93127 0.92419 0.82796 0.96268 0.93636 0.92236 0.90684 0.89763 0.84932 0.85391 0.83535 0.82411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.72 10.70 59.85 0.64 1.36 16 2 N -0.74 -7.05 5.71 -67.08 -0.38 -7.43 16 3 C 0.51 6.81 7.83 -10.99 -0.09 6.73 16 4 O -0.54 -9.52 15.98 5.56 0.09 -9.43 16 5 C -0.14 -1.70 5.70 -27.89 -0.16 -1.86 16 6 C -0.10 -1.60 4.50 -26.73 -0.12 -1.72 16 7 C -0.09 -1.71 4.50 -26.73 -0.12 -1.83 16 8 C -0.15 -3.10 3.80 -27.88 -0.11 -3.21 16 9 C 0.55 12.66 6.34 -10.98 -0.07 12.59 16 10 O -0.60 -14.61 15.09 5.55 0.08 -14.52 16 11 N -0.58 -12.71 2.11 -176.44 -0.37 -13.09 16 12 C 0.23 5.06 5.65 -5.19 -0.03 5.03 16 13 C -0.54 -13.08 9.11 -34.44 -0.31 -13.39 16 14 H 0.06 1.45 7.82 -52.48 -0.41 1.04 16 15 C 0.08 1.94 5.33 -17.82 -0.10 1.85 16 16 N -0.87 -21.72 8.26 55.43 0.46 -21.26 16 17 Si 0.90 19.68 29.54 -169.99 -5.02 14.65 16 18 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 19 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 20 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 21 C 0.17 3.31 5.43 -5.20 -0.03 3.29 16 22 C -0.14 -2.45 5.44 -104.48 -0.57 -3.02 16 23 C -0.07 -1.02 9.88 -39.28 -0.39 -1.40 16 24 C -0.18 -2.46 10.11 -39.44 -0.40 -2.86 16 25 C 0.08 1.19 11.18 -17.55 -0.20 1.00 16 26 N -0.49 -8.58 10.36 -13.25 -0.14 -8.71 16 27 C 0.12 2.16 10.67 -17.55 -0.19 1.98 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.40 2.51 8.83 -40.82 -0.36 2.14 16 32 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.06 1.04 8.10 -51.93 -0.42 0.62 16 35 H 0.07 1.24 8.10 -51.93 -0.42 0.82 16 36 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 37 H 0.05 0.90 8.10 -51.93 -0.42 0.48 16 38 H 0.06 1.15 7.55 -51.93 -0.39 0.75 16 39 H 0.16 3.55 4.96 -51.93 -0.26 3.29 16 40 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.05 1.04 5.92 -51.93 -0.31 0.73 16 42 H 0.27 6.58 8.32 -40.82 -0.34 6.24 16 43 H 0.07 1.58 7.49 -51.93 -0.39 1.19 16 44 H 0.08 1.63 7.79 -51.93 -0.40 1.22 16 45 H 0.13 1.90 8.06 -52.48 -0.42 1.47 16 46 H 0.13 1.33 8.06 -52.48 -0.42 0.91 16 47 H 0.15 1.63 8.06 -52.48 -0.42 1.20 16 48 H 0.16 3.01 7.68 -52.49 -0.40 2.61 16 LS Contribution 396.35 15.07 5.97 5.97 Total: -1.00 -30.83 396.35 -9.08 -39.91 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: -7.55 Total: 9.41 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: -2.23 Total: 4.51 kcal Atomic # 7 Polarization: -50.07 SS G_CDS: -0.43 Total: -50.50 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: 0.17 Total: -23.95 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.02 Total: 14.65 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -30.83 -9.08 -39.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338486549.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.540 kcal (2) G-P(sol) polarization free energy of solvation -30.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds