Wall clock time and date at job start Tue Mar 31 2020 17:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34772 * 120.00155 * 2 1 4 4 O 1.21550 * 119.99819 * 359.97438 * 3 2 1 5 5 C 1.47860 * 120.00172 * 180.02562 * 3 2 1 6 6 C 1.39618 * 120.10762 * 359.97307 * 5 3 2 7 7 C 1.37984 * 119.99606 * 180.02562 * 6 5 3 8 8 C 1.38257 * 120.21708 * 359.74563 * 7 6 5 9 9 C 1.38941 * 120.22856 * 0.51363 * 8 7 6 10 10 N 1.39949 * 120.00409 * 179.76709 * 9 8 7 11 11 C 1.46502 * 120.00324 * 64.91856 * 10 9 8 12 12 C 1.34779 * 120.00257 * 244.92014 * 10 9 8 13 13 O 1.21293 * 119.99330 * 355.63040 * 12 10 9 14 14 C 1.50697 * 120.00436 * 175.62962 * 12 10 9 15 15 H 1.09006 * 109.46894 * 320.00090 * 14 12 10 16 16 N 1.46904 * 109.47274 * 200.00253 * 14 12 10 17 17 C 1.52997 * 109.47206 * 79.99976 * 14 12 10 18 18 C 1.52995 * 109.46966 * 184.99984 * 17 14 12 19 19 C 1.53007 * 109.46975 * 179.97438 * 18 17 14 20 20 C 1.50707 * 109.47126 * 180.02562 * 19 18 17 21 21 H 1.08005 * 119.99594 * 0.02562 * 20 19 18 22 22 C 1.37871 * 119.99694 * 179.97438 * 20 19 18 23 23 N 1.31515 * 120.00282 * 0.02562 * 22 20 19 24 24 Si 1.86808 * 119.99704 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.47012 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47161 * 120.00251 * 24 22 20 27 27 H 1.48499 * 109.47151 * 240.00214 * 24 22 20 28 28 C 1.38637 * 119.99826 * 359.48712 * 9 8 7 29 29 H 1.09001 * 109.46855 * 300.00206 * 1 2 3 30 30 H 1.08998 * 109.47391 * 59.99759 * 1 2 3 31 31 H 1.08999 * 109.47614 * 180.02562 * 1 2 3 32 32 H 0.97000 * 119.99359 * 179.97438 * 2 1 3 33 33 H 1.08000 * 120.00726 * 0.02562 * 6 5 3 34 34 H 1.07999 * 119.88927 * 180.02562 * 7 6 5 35 35 H 1.08001 * 119.88358 * 180.28199 * 8 7 6 36 36 H 1.09004 * 109.46712 * 270.00309 * 11 10 9 37 37 H 1.09003 * 109.46631 * 29.99889 * 11 10 9 38 38 H 1.09001 * 109.47249 * 150.00065 * 11 10 9 39 39 H 1.00898 * 110.99866 * 176.04428 * 16 14 12 40 40 H 1.00896 * 110.99615 * 300.00163 * 16 14 12 41 41 H 1.09003 * 109.46841 * 64.99974 * 17 14 12 42 42 H 1.09002 * 109.47189 * 305.00420 * 17 14 12 43 43 H 1.09003 * 109.47349 * 60.00301 * 18 17 14 44 44 H 1.08998 * 109.47784 * 299.99784 * 18 17 14 45 45 H 1.08997 * 109.47266 * 299.99963 * 19 18 17 46 46 H 1.08990 * 109.47052 * 60.00203 * 19 18 17 47 47 H 0.96998 * 119.99498 * 179.97438 * 23 22 20 48 48 H 1.08006 * 120.11589 * 180.23617 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5312 2.2198 -0.0005 5 6 3.6175 1.1671 -0.0006 6 6 4.3179 -0.0407 -0.0005 7 6 5.6977 -0.0380 -0.0005 8 6 6.3912 1.1581 -0.0059 9 6 5.7036 2.3654 -0.0005 10 7 6.4103 3.5733 -0.0010 11 6 7.2396 3.9364 -1.1529 12 6 6.3281 4.4027 1.0582 13 8 5.5807 4.1407 1.9769 14 6 7.1646 5.6554 1.1011 15 1 8.1591 5.4417 0.7093 16 7 7.2754 6.1229 2.4894 17 6 6.5028 6.7401 0.2489 18 6 7.4126 7.9688 0.1909 19 6 6.7510 9.0533 -0.6619 20 6 7.6474 10.2635 -0.7196 21 1 8.5944 10.2592 -0.2003 22 6 7.2590 11.3755 -1.4361 23 7 6.1060 11.3804 -2.0689 24 14 8.3698 12.8757 -1.5071 25 1 9.6005 12.6183 -0.7168 26 1 8.7375 13.1531 -2.9188 27 1 7.6546 14.0483 -0.9423 28 6 4.3172 2.3735 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.9499 -0.8401 0.0004 33 1 3.7797 -0.9771 -0.0005 34 1 6.2377 -0.9733 -0.0009 35 1 7.4712 1.1539 -0.0105 36 1 8.2504 3.5554 -1.0072 37 1 6.8145 3.5021 -2.0578 38 1 7.2708 5.0216 -1.2505 39 1 7.8845 6.9248 2.5533 40 1 6.3660 6.3278 2.8755 41 1 5.5461 7.0169 0.6919 42 1 6.3399 6.3606 -0.7598 43 1 8.3693 7.6920 -0.2521 44 1 7.5755 8.3484 1.1996 45 1 6.5885 8.6737 -1.6706 46 1 5.7943 9.3303 -0.2194 47 1 5.8327 12.1629 -2.5726 48 1 3.7807 3.3109 -0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342614158.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:05 Heat of formation + Delta-G solvation = -46.885785 kcal Electronic energy + Delta-G solvation = -28056.153057 eV Core-core repulsion = 24110.810776 eV Total energy + Delta-G solvation = -3945.342281 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.94545 -40.01729 -38.42114 -36.09845 -35.66925 -34.97120 -33.38537 -31.58179 -31.27112 -30.76804 -27.93693 -27.25032 -26.95933 -25.52909 -23.68933 -23.15945 -22.14124 -20.79743 -20.21932 -19.56036 -18.30850 -17.38673 -16.61766 -16.49201 -16.39544 -16.29787 -15.57300 -15.49723 -14.94890 -14.83622 -14.54550 -14.36324 -14.24168 -13.96446 -13.78943 -13.43507 -13.41748 -12.94812 -12.72873 -12.70391 -12.59456 -12.46431 -12.19660 -11.92287 -11.83497 -11.75953 -11.21765 -10.82775 -10.74252 -10.57044 -10.30916 -9.89094 -9.78536 -9.63162 -9.53175 -9.41087 -9.25147 -9.13989 -8.68906 -8.48688 -8.38991 -6.03758 -4.06933 0.50569 0.98001 2.49648 2.63187 2.64663 2.90086 3.28391 3.36202 3.39699 3.51990 4.31028 4.41604 4.46900 4.54972 4.62906 4.79080 4.79597 4.89919 4.91938 5.10916 5.15509 5.15606 5.20035 5.24270 5.29438 5.32175 5.44876 5.50680 5.56098 5.75818 5.87465 5.91935 5.94250 5.99761 6.10696 6.19682 6.23042 6.53138 6.70362 6.72177 6.99386 7.02299 7.09423 7.25953 7.57662 7.61719 7.73796 7.89169 7.95184 8.12556 8.36680 9.00469 9.57778 11.07413 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015746 B = 0.002224 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.847348 B =12585.922915 C =13474.279680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.733 5.733 3 C 0.558 3.442 4 O -0.528 6.528 5 C -0.128 4.128 6 C -0.092 4.092 7 C -0.117 4.117 8 C -0.095 4.095 9 C 0.142 3.858 10 N -0.581 5.581 11 C 0.068 3.932 12 C 0.527 3.473 13 O -0.515 6.515 14 C 0.079 3.921 15 H 0.102 0.898 16 N -0.830 5.830 17 C -0.152 4.152 18 C -0.108 4.108 19 C 0.021 3.979 20 C -0.522 4.522 21 H 0.056 0.944 22 C 0.056 3.944 23 N -0.894 5.894 24 Si 0.892 3.108 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.284 1.284 28 C -0.044 4.044 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.401 0.599 33 H 0.127 0.873 34 H 0.134 0.866 35 H 0.131 0.869 36 H 0.062 0.938 37 H 0.076 0.924 38 H 0.092 0.908 39 H 0.353 0.647 40 H 0.350 0.650 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.052 0.948 44 H 0.049 0.951 45 H 0.016 0.984 46 H 0.015 0.985 47 H 0.260 0.740 48 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.396 -28.978 1.888 29.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.386 5.386 3 C 0.345 3.655 4 O -0.404 6.404 5 C -0.131 4.131 6 C -0.111 4.111 7 C -0.135 4.135 8 C -0.115 4.115 9 C 0.051 3.949 10 N -0.312 5.312 11 C -0.073 4.073 12 C 0.316 3.684 13 O -0.388 6.388 14 C -0.036 4.036 15 H 0.120 0.880 16 N -0.363 5.363 17 C -0.192 4.192 18 C -0.146 4.146 19 C -0.016 4.016 20 C -0.560 4.560 21 H 0.074 0.926 22 C -0.145 4.145 23 N -0.533 5.533 24 Si 0.720 3.280 25 H -0.197 1.197 26 H -0.210 1.210 27 H -0.210 1.210 28 C -0.065 4.065 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.235 0.765 33 H 0.144 0.856 34 H 0.152 0.848 35 H 0.149 0.851 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.111 0.889 39 H 0.168 0.832 40 H 0.164 0.836 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.070 0.930 44 H 0.068 0.932 45 H 0.034 0.966 46 H 0.033 0.967 47 H 0.070 0.930 48 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -3.047 -28.905 2.458 29.169 hybrid contribution 0.353 1.330 -0.626 1.511 sum -2.695 -27.575 1.832 27.767 Atomic orbital electron populations 1.21566 0.79080 1.02296 1.02696 1.45677 1.07933 1.08494 1.76511 1.18296 0.87225 0.83786 0.76166 1.90822 1.69822 1.31105 1.48662 1.19722 0.92630 0.94027 1.06761 1.21245 0.94654 0.96611 0.98552 1.20928 0.93759 0.97898 1.00962 1.21433 1.00584 0.91370 0.98132 1.17480 0.90242 0.85774 1.01362 1.45451 1.48355 1.18266 1.19117 1.22149 0.94521 1.03293 0.87379 1.20984 0.82525 0.84253 0.80626 1.90702 1.38102 1.73919 1.36072 1.21437 0.99152 0.91641 0.91361 0.87965 1.58693 1.19044 1.42374 1.16156 1.22529 1.00536 0.96199 0.99907 1.21654 0.97745 0.94372 1.00787 1.19088 0.95897 0.92080 0.94501 1.21270 1.04503 0.99189 1.31036 0.92612 1.25041 0.95186 0.98773 0.95527 1.69976 1.20699 1.29746 1.32927 0.86544 0.80793 0.82957 0.77752 1.19719 1.21011 1.21004 1.21387 0.92897 0.98391 0.93777 0.91987 0.91977 0.90514 0.76450 0.85551 0.84844 0.85109 0.91917 0.90543 0.88923 0.83165 0.83634 0.91506 0.91204 0.92969 0.93239 0.96592 0.96661 0.93005 0.84394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.57 10.70 59.85 0.64 1.21 16 2 N -0.73 -5.68 5.66 -68.04 -0.39 -6.06 16 3 C 0.56 6.79 7.77 -12.32 -0.10 6.69 16 4 O -0.53 -8.78 16.34 5.32 0.09 -8.69 16 5 C -0.13 -1.44 5.87 -104.99 -0.62 -2.06 16 6 C -0.09 -0.70 9.54 -39.16 -0.37 -1.07 16 7 C -0.12 -0.85 10.02 -39.67 -0.40 -1.25 16 8 C -0.10 -0.88 9.80 -39.31 -0.39 -1.27 16 9 C 0.14 1.75 4.88 -83.74 -0.41 1.34 16 10 N -0.58 -7.27 2.93 -120.86 -0.35 -7.62 16 11 C 0.07 0.64 9.69 59.85 0.58 1.22 16 12 C 0.53 8.05 6.80 -10.99 -0.07 7.98 16 13 O -0.52 -9.64 15.74 5.55 0.09 -9.55 16 14 C 0.08 1.11 2.38 -68.87 -0.16 0.95 16 15 H 0.10 1.26 7.40 -51.93 -0.38 0.88 16 16 N -0.83 -11.87 8.94 -5.65 -0.05 -11.92 16 17 C -0.15 -2.43 4.52 -26.74 -0.12 -2.55 16 18 C -0.11 -2.03 4.92 -26.73 -0.13 -2.16 16 19 C 0.02 0.53 4.97 -27.88 -0.14 0.40 16 20 C -0.52 -14.45 9.11 -34.44 -0.31 -14.77 16 21 H 0.06 1.49 7.74 -52.48 -0.41 1.09 16 22 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 23 N -0.89 -26.80 13.29 55.43 0.74 -26.06 16 24 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 25 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 27 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 28 C -0.04 -0.60 8.76 -38.98 -0.34 -0.94 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.40 1.73 6.86 -40.82 -0.28 1.45 16 33 H 0.13 0.50 6.40 -52.49 -0.34 0.16 16 34 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 35 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.08 0.62 8.05 -51.93 -0.42 0.20 16 38 H 0.09 0.93 4.68 -51.93 -0.24 0.69 16 39 H 0.35 4.66 7.55 -39.29 -0.30 4.36 16 40 H 0.35 5.24 8.58 -39.29 -0.34 4.90 16 41 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.07 1.07 6.08 -51.93 -0.32 0.75 16 43 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.05 0.90 6.87 -51.93 -0.36 0.55 16 45 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 48 H 0.14 2.23 7.65 -52.48 -0.40 1.83 16 LS Contribution 396.38 15.07 5.97 5.97 Total: -1.00 -36.80 396.38 -8.50 -45.30 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -7.14 Total: 6.99 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: -2.44 Total: -4.79 kcal Atomic # 7 Polarization: -51.61 SS G_CDS: -0.05 Total: -51.66 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: 0.17 Total: -18.25 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.80 -8.50 -45.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342614158.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.581 kcal (2) G-P(sol) polarization free energy of solvation -36.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds