Wall clock time and date at job start Tue Mar 31 2020 17:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34772 * 120.00155 * 2 1 4 4 O 1.21550 * 119.99819 * 359.97438 * 3 2 1 5 5 C 1.47860 * 120.00172 * 180.02562 * 3 2 1 6 6 C 1.39618 * 120.10762 * 359.97307 * 5 3 2 7 7 C 1.37984 * 119.99606 * 180.02562 * 6 5 3 8 8 C 1.38257 * 120.21708 * 359.74563 * 7 6 5 9 9 C 1.38941 * 120.22856 * 0.51363 * 8 7 6 10 10 N 1.39949 * 120.00409 * 179.76709 * 9 8 7 11 11 C 1.46502 * 120.00324 * 64.91856 * 10 9 8 12 12 C 1.34779 * 120.00257 * 244.92014 * 10 9 8 13 13 O 1.21293 * 119.99330 * 355.63040 * 12 10 9 14 14 C 1.50697 * 120.00436 * 175.62962 * 12 10 9 15 15 H 1.09006 * 109.46894 * 320.00090 * 14 12 10 16 16 N 1.46904 * 109.47274 * 200.00253 * 14 12 10 17 17 C 1.52997 * 109.47206 * 79.99976 * 14 12 10 18 18 C 1.52995 * 109.46966 * 184.99984 * 17 14 12 19 19 C 1.53007 * 109.46975 * 179.97438 * 18 17 14 20 20 C 1.50707 * 109.47126 * 180.02562 * 19 18 17 21 21 H 1.08005 * 119.99594 * 0.02562 * 20 19 18 22 22 C 1.37871 * 119.99694 * 179.97438 * 20 19 18 23 23 N 1.31515 * 120.00282 * 0.02562 * 22 20 19 24 24 Si 1.86808 * 119.99704 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.47012 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47161 * 120.00251 * 24 22 20 27 27 H 1.48499 * 109.47151 * 240.00214 * 24 22 20 28 28 C 1.38637 * 119.99826 * 359.48712 * 9 8 7 29 29 H 1.09001 * 109.46855 * 300.00206 * 1 2 3 30 30 H 1.08998 * 109.47391 * 59.99759 * 1 2 3 31 31 H 1.08999 * 109.47614 * 180.02562 * 1 2 3 32 32 H 0.97000 * 119.99359 * 179.97438 * 2 1 3 33 33 H 1.08000 * 120.00726 * 0.02562 * 6 5 3 34 34 H 1.07999 * 119.88927 * 180.02562 * 7 6 5 35 35 H 1.08001 * 119.88358 * 180.28199 * 8 7 6 36 36 H 1.09004 * 109.46712 * 270.00309 * 11 10 9 37 37 H 1.09003 * 109.46631 * 29.99889 * 11 10 9 38 38 H 1.09001 * 109.47249 * 150.00065 * 11 10 9 39 39 H 1.00898 * 110.99866 * 176.04428 * 16 14 12 40 40 H 1.00896 * 110.99615 * 300.00163 * 16 14 12 41 41 H 1.09003 * 109.46841 * 64.99974 * 17 14 12 42 42 H 1.09002 * 109.47189 * 305.00420 * 17 14 12 43 43 H 1.09003 * 109.47349 * 60.00301 * 18 17 14 44 44 H 1.08998 * 109.47784 * 299.99784 * 18 17 14 45 45 H 1.08997 * 109.47266 * 299.99963 * 19 18 17 46 46 H 1.08990 * 109.47052 * 60.00203 * 19 18 17 47 47 H 0.96998 * 119.99498 * 179.97438 * 23 22 20 48 48 H 1.08006 * 120.11589 * 180.23617 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5312 2.2198 -0.0005 5 6 3.6175 1.1671 -0.0006 6 6 4.3179 -0.0407 -0.0005 7 6 5.6977 -0.0380 -0.0005 8 6 6.3912 1.1581 -0.0059 9 6 5.7036 2.3654 -0.0005 10 7 6.4103 3.5733 -0.0010 11 6 7.2396 3.9364 -1.1529 12 6 6.3281 4.4027 1.0582 13 8 5.5807 4.1407 1.9769 14 6 7.1646 5.6554 1.1011 15 1 8.1591 5.4417 0.7093 16 7 7.2754 6.1229 2.4894 17 6 6.5028 6.7401 0.2489 18 6 7.4126 7.9688 0.1909 19 6 6.7510 9.0533 -0.6619 20 6 7.6474 10.2635 -0.7196 21 1 8.5944 10.2592 -0.2003 22 6 7.2590 11.3755 -1.4361 23 7 6.1060 11.3804 -2.0689 24 14 8.3698 12.8757 -1.5071 25 1 9.6005 12.6183 -0.7168 26 1 8.7375 13.1531 -2.9188 27 1 7.6546 14.0483 -0.9423 28 6 4.3172 2.3735 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.9499 -0.8401 0.0004 33 1 3.7797 -0.9771 -0.0005 34 1 6.2377 -0.9733 -0.0009 35 1 7.4712 1.1539 -0.0105 36 1 8.2504 3.5554 -1.0072 37 1 6.8145 3.5021 -2.0578 38 1 7.2708 5.0216 -1.2505 39 1 7.8845 6.9248 2.5533 40 1 6.3660 6.3278 2.8755 41 1 5.5461 7.0169 0.6919 42 1 6.3399 6.3606 -0.7598 43 1 8.3693 7.6920 -0.2521 44 1 7.5755 8.3484 1.1996 45 1 6.5885 8.6737 -1.6706 46 1 5.7943 9.3303 -0.2194 47 1 5.8327 12.1629 -2.5726 48 1 3.7807 3.3109 -0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342614158.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:05 Heat of formation + Delta-G solvation = -74.787371 kcal Electronic energy + Delta-G solvation = -28057.362961 eV Core-core repulsion = 24110.810776 eV Total energy + Delta-G solvation = -3946.552185 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.90406 -40.99364 -39.33999 -37.48265 -36.66860 -35.80558 -35.30556 -33.03545 -32.34543 -31.58246 -29.46455 -27.99812 -27.85433 -26.99034 -24.80524 -24.26970 -23.28786 -21.95681 -21.58751 -20.52014 -19.24783 -18.49897 -18.43468 -17.46714 -17.41407 -17.10912 -16.58724 -16.45665 -16.36608 -16.24117 -15.90750 -15.51260 -15.23956 -14.89514 -14.69724 -14.57227 -14.32477 -14.19520 -14.09471 -13.74353 -13.63214 -13.45782 -13.22014 -13.14500 -12.96066 -12.87729 -12.56650 -12.52715 -12.40153 -12.38425 -11.52218 -11.44979 -11.29504 -11.25961 -10.85746 -10.58173 -10.49021 -10.33065 -9.98947 -9.77955 -9.49466 -8.21282 -6.32847 -0.27381 0.19608 1.39387 1.39877 1.41121 1.53298 1.70168 1.75706 2.14825 2.39941 2.72975 3.12335 3.42293 3.60586 3.63041 3.83934 3.90342 3.96064 4.00381 4.11416 4.14294 4.32015 4.38575 4.39175 4.49237 4.53385 4.56790 4.61311 4.68791 4.79865 4.85048 4.91293 4.96426 5.15080 5.18043 5.21496 5.23844 5.29253 5.32504 5.45837 5.51115 5.70377 5.83593 5.86683 5.95808 6.16778 6.21907 6.42727 6.43735 6.85664 7.01909 7.10265 7.37219 8.90718 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015746 B = 0.002224 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.847348 B =12585.922915 C =13474.279680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.711 5.711 3 C 0.549 3.451 4 O -0.590 6.590 5 C -0.145 4.145 6 C -0.074 4.074 7 C -0.103 4.103 8 C -0.090 4.090 9 C 0.115 3.885 10 N -0.575 5.575 11 C 0.061 3.939 12 C 0.521 3.479 13 O -0.561 6.561 14 C 0.091 3.909 15 H 0.130 0.870 16 N -0.831 5.831 17 C -0.140 4.140 18 C -0.092 4.092 19 C 0.022 3.978 20 C -0.538 4.538 21 H 0.066 0.934 22 C -0.005 4.005 23 N -0.937 5.937 24 Si 0.966 3.034 25 H -0.257 1.257 26 H -0.278 1.278 27 H -0.282 1.282 28 C -0.078 4.078 29 H 0.046 0.954 30 H 0.049 0.951 31 H 0.122 0.878 32 H 0.421 0.579 33 H 0.172 0.828 34 H 0.181 0.819 35 H 0.155 0.845 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.360 0.640 40 H 0.344 0.656 41 H 0.042 0.958 42 H 0.074 0.926 43 H 0.071 0.929 44 H 0.056 0.944 45 H -0.008 1.008 46 H -0.020 1.020 47 H 0.262 0.738 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.476 -32.402 1.739 32.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.364 5.364 3 C 0.337 3.663 4 O -0.472 6.472 5 C -0.148 4.148 6 C -0.092 4.092 7 C -0.121 4.121 8 C -0.109 4.109 9 C 0.025 3.975 10 N -0.304 5.304 11 C -0.079 4.079 12 C 0.310 3.690 13 O -0.437 6.437 14 C -0.024 4.024 15 H 0.148 0.852 16 N -0.363 5.363 17 C -0.180 4.180 18 C -0.129 4.129 19 C -0.015 4.015 20 C -0.576 4.576 21 H 0.084 0.916 22 C -0.203 4.203 23 N -0.577 5.577 24 Si 0.790 3.210 25 H -0.181 1.181 26 H -0.204 1.204 27 H -0.208 1.208 28 C -0.099 4.099 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.141 0.859 32 H 0.260 0.740 33 H 0.189 0.811 34 H 0.198 0.802 35 H 0.173 0.827 36 H 0.113 0.887 37 H 0.106 0.894 38 H 0.101 0.899 39 H 0.176 0.824 40 H 0.157 0.843 41 H 0.060 0.940 42 H 0.092 0.908 43 H 0.089 0.911 44 H 0.075 0.925 45 H 0.011 0.989 46 H -0.001 1.001 47 H 0.071 0.929 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.141 -32.408 2.282 32.489 hybrid contribution -0.606 2.266 -0.624 2.427 sum -0.748 -30.143 1.658 30.197 Atomic orbital electron populations 1.21747 0.78172 1.04817 1.01408 1.45560 1.08573 1.08004 1.74228 1.18660 0.87923 0.84093 0.75597 1.90785 1.70993 1.33492 1.51899 1.19790 0.92211 0.94803 1.08037 1.21718 0.95255 0.96507 0.95729 1.21490 0.93566 0.98848 0.98187 1.21758 1.01839 0.90603 0.96745 1.17729 0.89762 0.86777 1.03235 1.45485 1.47915 1.18149 1.18876 1.22376 0.95745 1.02978 0.86781 1.21180 0.82093 0.84810 0.80888 1.90675 1.39900 1.75068 1.38101 1.21371 0.99908 0.90345 0.90779 0.85197 1.58713 1.18804 1.42671 1.16126 1.22348 0.99016 0.96002 1.00621 1.21420 0.98250 0.93336 0.99910 1.19015 0.94665 0.93661 0.94131 1.21749 1.05076 1.00065 1.30724 0.91557 1.26040 0.96693 1.02384 0.95149 1.70123 1.22776 1.30854 1.33970 0.85384 0.79032 0.78485 0.78058 1.18095 1.20404 1.20841 1.21207 0.93930 0.97711 0.97039 0.93500 0.93203 0.85947 0.74049 0.81103 0.80213 0.82696 0.88720 0.89361 0.89888 0.82428 0.84327 0.93951 0.90771 0.91050 0.92492 0.98921 1.00141 0.92896 0.89144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.00 10.70 127.77 1.37 2.37 16 2 N -0.71 -10.16 5.66 -487.46 -2.76 -12.92 16 3 C 0.55 14.01 7.77 86.79 0.67 14.68 16 4 O -0.59 -21.79 16.34 -3.87 -0.06 -21.85 16 5 C -0.14 -3.30 5.87 -20.10 -0.12 -3.42 16 6 C -0.07 -0.87 9.54 22.54 0.21 -0.66 16 7 C -0.10 -1.02 10.02 22.21 0.22 -0.80 16 8 C -0.09 -1.40 9.80 22.44 0.22 -1.18 16 9 C 0.12 2.84 4.88 38.11 0.19 3.03 16 10 N -0.57 -14.45 2.93 -654.67 -1.92 -16.37 16 11 C 0.06 1.07 9.69 127.77 1.24 2.31 16 12 C 0.52 16.41 6.80 87.66 0.60 17.01 16 13 O -0.56 -22.29 15.74 -3.07 -0.05 -22.34 16 14 C 0.09 2.55 2.38 44.17 0.11 2.65 16 15 H 0.13 2.92 7.40 -2.38 -0.02 2.90 16 16 N -0.83 -23.74 8.94 -171.80 -1.54 -25.28 16 17 C -0.14 -4.64 4.52 30.59 0.14 -4.50 16 18 C -0.09 -3.45 4.92 30.59 0.15 -3.30 16 19 C 0.02 1.16 4.97 29.85 0.15 1.31 16 20 C -0.54 -30.10 9.11 25.60 0.23 -29.87 16 21 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 22 C -0.01 -0.31 5.46 84.65 0.46 0.16 16 23 N -0.94 -57.76 13.29 21.45 0.28 -57.48 16 24 Si 0.97 44.12 29.54 68.60 2.03 46.14 16 25 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 26 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 27 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 28 C -0.08 -2.31 8.76 22.66 0.20 -2.11 16 29 H 0.05 0.73 8.14 -2.39 -0.02 0.72 16 30 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.12 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.42 2.23 6.86 -92.71 -0.64 1.60 16 33 H 0.17 0.40 6.40 -2.91 -0.02 0.38 16 34 H 0.18 0.23 8.06 -2.91 -0.02 0.21 16 35 H 0.16 1.64 8.06 -2.91 -0.02 1.61 16 36 H 0.09 1.07 8.14 -2.39 -0.02 1.06 16 37 H 0.09 1.33 8.05 -2.39 -0.02 1.31 16 38 H 0.08 1.61 4.68 -2.39 -0.01 1.60 16 39 H 0.36 9.21 7.55 -89.70 -0.68 8.53 16 40 H 0.34 10.73 8.58 -89.70 -0.77 9.96 16 41 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.07 2.37 6.08 -2.39 -0.01 2.36 16 43 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 44 H 0.06 2.06 6.87 -2.39 -0.02 2.04 16 45 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 46 H -0.02 -1.15 8.14 -2.39 -0.02 -1.17 16 47 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 48 H 0.09 3.44 7.65 -2.91 -0.02 3.42 16 Total: -1.00 -88.35 396.38 0.95 -87.41 By element: Atomic # 1 Polarization: 26.09 SS G_CDS: -1.08 Total: 25.01 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: 6.04 Total: -2.33 kcal Atomic # 7 Polarization: -106.12 SS G_CDS: -5.93 Total: -112.05 kcal Atomic # 8 Polarization: -44.08 SS G_CDS: -0.11 Total: -44.19 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.14 kcal Total: -88.35 0.95 -87.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342614158.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.618 kcal (2) G-P(sol) polarization free energy of solvation -88.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds