Wall clock time and date at job start Tue Mar 31 2020 17:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34771 * 120.00233 * 2 1 4 4 O 1.21556 * 120.00019 * 0.02562 * 3 2 1 5 5 C 1.47845 * 120.00096 * 179.97438 * 3 2 1 6 6 C 1.39588 * 120.14573 * 359.97438 * 5 3 2 7 7 C 1.37934 * 119.85669 * 180.02562 * 6 5 3 8 8 C 1.38385 * 120.14415 * 359.72608 * 7 6 5 9 9 C 1.38344 * 120.28816 * 0.54967 * 8 7 6 10 10 C 1.50703 * 119.92486 * 179.72450 * 9 8 7 11 11 C 1.52995 * 109.46959 * 269.72800 * 10 9 8 12 12 N 1.46497 * 109.47234 * 180.02562 * 11 10 9 13 13 C 1.34781 * 120.00245 * 179.97438 * 12 11 10 14 14 O 1.21275 * 119.99676 * 0.02562 * 13 12 11 15 15 C 1.50703 * 119.99971 * 179.97438 * 13 12 11 16 16 H 1.09002 * 109.47083 * 320.00492 * 15 13 12 17 17 N 1.46898 * 109.47113 * 200.00293 * 15 13 12 18 18 C 1.53000 * 109.46801 * 80.00207 * 15 13 12 19 19 C 1.52997 * 109.47060 * 184.99876 * 18 15 13 20 20 C 1.50697 * 109.47466 * 180.02562 * 19 18 15 21 21 H 1.08001 * 119.99890 * 0.02562 * 20 19 18 22 22 C 1.37876 * 120.00428 * 179.97438 * 20 19 18 23 23 N 1.31519 * 119.99563 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00432 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46756 * 59.99920 * 24 22 20 26 26 H 1.48490 * 109.47381 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47117 * 300.00527 * 24 22 20 28 28 C 1.37975 * 120.14482 * 359.44723 * 9 8 7 29 29 H 1.08998 * 109.47241 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46968 * 299.99925 * 1 2 3 31 31 H 1.08998 * 109.46744 * 59.99910 * 1 2 3 32 32 H 0.97002 * 119.99832 * 180.02562 * 2 1 3 33 33 H 1.08002 * 120.07259 * 359.97438 * 6 5 3 34 34 H 1.08003 * 119.93244 * 180.02562 * 7 6 5 35 35 H 1.07998 * 119.85691 * 180.29598 * 8 7 6 36 36 H 1.09004 * 109.46899 * 149.72507 * 10 9 8 37 37 H 1.08999 * 109.46867 * 29.72895 * 10 9 8 38 38 H 1.09004 * 109.47555 * 60.00108 * 11 10 9 39 39 H 1.09009 * 109.47408 * 299.99822 * 11 10 9 40 40 H 0.97000 * 120.00041 * 359.97438 * 12 11 10 41 41 H 1.00901 * 110.99892 * 176.04953 * 17 15 13 42 42 H 1.00899 * 111.00057 * 300.00501 * 17 15 13 43 43 H 1.09002 * 109.47398 * 305.00045 * 18 15 13 44 44 H 1.09001 * 109.47194 * 65.00225 * 18 15 13 45 45 H 1.09002 * 109.47153 * 300.00319 * 19 18 15 46 46 H 1.08998 * 109.47533 * 59.99948 * 19 18 15 47 47 H 0.97002 * 119.99731 * 180.02562 * 23 22 20 48 48 H 1.08007 * 120.07477 * 180.25006 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5312 2.2199 0.0005 5 6 3.6174 1.1671 0.0006 6 6 4.3184 -0.0400 0.0017 7 6 5.6977 -0.0331 0.0027 8 6 6.3866 1.1671 -0.0030 9 6 5.6980 2.3669 0.0016 10 6 6.4565 3.6691 0.0016 11 6 6.7121 4.1104 1.4441 12 7 7.4490 5.3766 1.4441 13 6 7.7867 5.9597 2.6114 14 8 7.4811 5.4360 3.6616 15 6 8.5453 7.2620 2.6114 16 1 9.2998 7.2429 1.8250 17 7 9.1995 7.4475 3.9134 18 6 7.5746 8.4174 2.3589 19 6 8.3595 9.7249 2.2348 20 6 7.4035 10.8631 1.9868 21 1 6.3422 10.6730 1.9244 22 6 7.8836 12.1473 1.8407 23 7 9.1760 12.3788 1.9172 24 14 6.6987 13.5581 1.5325 25 1 5.7438 13.6588 2.6654 26 1 7.4603 14.8272 1.4135 27 1 5.9497 13.3097 0.2746 28 6 4.3182 2.3739 0.0005 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.9500 -0.8401 -0.0004 33 1 3.7819 -0.9774 0.0025 34 1 6.2413 -0.9663 0.0031 35 1 7.4666 1.1671 -0.0070 36 1 5.8707 4.4308 -0.5131 37 1 7.4088 3.5348 -0.5115 38 1 7.2979 3.3487 1.9588 39 1 5.7598 4.2447 1.9572 40 1 7.6938 5.7953 0.6041 41 1 9.7670 8.2819 3.9173 42 1 8.5206 7.4685 4.6595 43 1 7.0245 8.2348 1.4358 44 1 6.8741 8.4918 3.1907 45 1 8.9096 9.9075 3.1580 46 1 9.0601 9.6506 1.4032 47 1 9.5137 13.2823 1.8147 48 1 3.7817 3.3114 0.0000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349092566.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:44 Heat of formation + Delta-G solvation = -96.266956 kcal Electronic energy + Delta-G solvation = -26961.800921 eV Core-core repulsion = 23014.317312 eV Total energy + Delta-G solvation = -3947.483609 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.32022 -40.89828 -39.57997 -37.22209 -36.45558 -35.79329 -34.83458 -33.74259 -32.17587 -31.68013 -30.00970 -28.15739 -27.73507 -25.90377 -24.51494 -24.02094 -22.58340 -22.35748 -21.42164 -20.97063 -19.06921 -18.69633 -18.04291 -17.36875 -17.25039 -17.00249 -16.59781 -16.44851 -16.32772 -15.99609 -15.75576 -15.62998 -15.37157 -14.97386 -14.69793 -14.63586 -14.36058 -14.18771 -13.93595 -13.92850 -13.63708 -13.44709 -13.14682 -12.94170 -12.76120 -12.73021 -12.67898 -12.54768 -12.30797 -12.01900 -11.80270 -11.71089 -11.31877 -11.16551 -10.76020 -10.55694 -10.32794 -10.12544 -9.89897 -9.77573 -9.63633 -8.21613 -6.31726 -0.17115 0.33867 1.39363 1.40735 1.48739 1.61706 1.77209 2.12513 2.18955 2.39706 2.83809 3.11786 3.66450 3.67577 3.76398 3.85669 3.90382 4.07167 4.09544 4.14138 4.17203 4.26453 4.34078 4.41526 4.50006 4.54837 4.57460 4.66975 4.78079 4.84203 4.91714 4.95044 4.98979 5.08441 5.09866 5.28021 5.32794 5.39914 5.44357 5.46591 5.56638 5.66133 5.80730 5.91456 6.07643 6.21503 6.44777 6.47650 6.54682 6.83291 7.12575 7.24282 7.37063 8.88730 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013122 B = 0.001923 C = 0.001751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.317925 B =14557.622080 C =15990.188935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.716 5.716 3 C 0.549 3.451 4 O -0.588 6.588 5 C -0.156 4.156 6 C -0.080 4.080 7 C -0.122 4.122 8 C -0.085 4.085 9 C -0.095 4.095 10 C -0.083 4.083 11 C 0.129 3.871 12 N -0.718 5.718 13 C 0.525 3.475 14 O -0.575 6.575 15 C 0.082 3.918 16 H 0.114 0.886 17 N -0.830 5.830 18 C -0.122 4.122 19 C 0.030 3.970 20 C -0.547 4.547 21 H 0.053 0.947 22 C 0.006 3.994 23 N -0.925 5.925 24 Si 0.958 3.042 25 H -0.273 1.273 26 H -0.282 1.282 27 H -0.268 1.268 28 C -0.076 4.076 29 H 0.117 0.883 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.419 0.581 33 H 0.159 0.841 34 H 0.164 0.836 35 H 0.151 0.849 36 H 0.084 0.916 37 H 0.108 0.892 38 H 0.066 0.934 39 H 0.045 0.955 40 H 0.416 0.584 41 H 0.353 0.647 42 H 0.343 0.657 43 H 0.066 0.934 44 H 0.041 0.959 45 H 0.003 0.997 46 H 0.005 0.995 47 H 0.264 0.736 48 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.600 -32.752 -8.629 34.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.368 5.368 3 C 0.337 3.663 4 O -0.469 6.469 5 C -0.159 4.159 6 C -0.099 4.099 7 C -0.139 4.139 8 C -0.103 4.103 9 C -0.096 4.096 10 C -0.121 4.121 11 C 0.006 3.994 12 N -0.372 5.372 13 C 0.312 3.688 14 O -0.454 6.454 15 C -0.034 4.034 16 H 0.132 0.868 17 N -0.361 5.361 18 C -0.162 4.162 19 C -0.007 4.007 20 C -0.585 4.585 21 H 0.071 0.929 22 C -0.193 4.193 23 N -0.564 5.564 24 Si 0.783 3.217 25 H -0.198 1.198 26 H -0.207 1.207 27 H -0.193 1.193 28 C -0.095 4.095 29 H 0.136 0.864 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.257 0.743 33 H 0.177 0.823 34 H 0.181 0.819 35 H 0.169 0.831 36 H 0.102 0.898 37 H 0.127 0.873 38 H 0.085 0.915 39 H 0.063 0.937 40 H 0.253 0.747 41 H 0.168 0.832 42 H 0.155 0.845 43 H 0.085 0.915 44 H 0.060 0.940 45 H 0.021 0.979 46 H 0.023 0.977 47 H 0.073 0.927 48 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -8.799 -32.993 -8.049 35.082 hybrid contribution -0.970 2.110 -0.257 2.336 sum -9.769 -30.883 -8.306 33.439 Atomic orbital electron populations 1.21724 0.78332 1.04620 1.01469 1.45632 1.08557 1.08299 1.74359 1.18728 0.88112 0.83943 0.75483 1.90772 1.71009 1.33169 1.51985 1.19913 0.91911 0.95527 1.08540 1.21616 0.95220 0.96723 0.96294 1.21521 0.93801 0.99370 0.99246 1.21676 1.01647 0.91467 0.95555 1.19706 0.92575 0.95858 1.01431 1.20750 1.01985 0.94387 0.94951 1.21279 0.95606 0.84950 0.97603 1.45872 1.58010 1.24570 1.08699 1.20759 0.78488 0.85976 0.83613 1.90623 1.55898 1.65919 1.32936 1.21420 0.96328 0.90779 0.94844 0.86844 1.58767 1.27728 1.46180 1.03458 1.22143 0.97934 0.94931 1.01173 1.18970 0.94803 0.91168 0.95784 1.21593 0.93942 0.93537 1.49396 0.92908 1.25848 0.96776 1.01608 0.95023 1.70051 1.13747 1.21830 1.50807 0.85612 0.78869 0.78248 0.78993 1.19800 1.20684 1.19294 1.21199 0.94209 0.97657 0.96457 0.86425 0.93367 0.93102 0.74314 0.82345 0.81876 0.83094 0.89782 0.87346 0.91524 0.93670 0.74718 0.83221 0.84454 0.91511 0.94049 0.97890 0.97666 0.92720 0.86926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.81 10.70 127.77 1.37 2.18 16 2 N -0.72 -8.39 5.66 -487.48 -2.76 -11.15 16 3 C 0.55 11.53 7.77 86.79 0.67 12.20 16 4 O -0.59 -18.24 16.35 -3.89 -0.06 -18.30 16 5 C -0.16 -2.76 5.87 -20.09 -0.12 -2.88 16 6 C -0.08 -0.77 9.54 22.52 0.21 -0.56 16 7 C -0.12 -1.00 10.03 22.23 0.22 -0.78 16 8 C -0.09 -0.95 9.69 22.33 0.22 -0.73 16 9 C -0.10 -1.52 5.13 -19.90 -0.10 -1.62 16 10 C -0.08 -1.24 5.46 29.85 0.16 -1.08 16 11 C 0.13 2.80 5.66 86.38 0.49 3.29 16 12 N -0.72 -17.36 5.56 -463.05 -2.57 -19.94 16 13 C 0.53 17.25 7.08 87.66 0.62 17.87 16 14 O -0.57 -23.06 16.25 -3.01 -0.05 -23.11 16 15 C 0.08 2.74 3.21 44.17 0.14 2.88 16 16 H 0.11 3.44 8.14 -2.39 -0.02 3.42 16 17 N -0.83 -29.04 8.94 -171.80 -1.54 -30.57 16 18 C -0.12 -4.82 4.78 30.59 0.15 -4.67 16 19 C 0.03 1.48 4.74 29.85 0.14 1.62 16 20 C -0.55 -30.38 9.11 25.60 0.23 -30.14 16 21 H 0.05 2.88 7.74 -2.91 -0.02 2.85 16 22 C 0.01 0.34 5.46 84.65 0.46 0.81 16 23 N -0.92 -54.40 13.29 21.45 0.28 -54.12 16 24 Si 0.96 43.95 29.54 68.60 2.03 45.98 16 25 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 26 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 27 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 28 C -0.08 -1.56 9.24 22.53 0.21 -1.35 16 29 H 0.12 0.18 8.14 -2.39 -0.02 0.16 16 30 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.42 1.59 6.86 -92.71 -0.64 0.95 16 33 H 0.16 0.29 6.41 -2.91 -0.02 0.28 16 34 H 0.16 0.29 8.06 -2.91 -0.02 0.27 16 35 H 0.15 1.01 8.06 -2.91 -0.02 0.99 16 36 H 0.08 1.28 8.08 -2.38 -0.02 1.26 16 37 H 0.11 1.10 8.08 -2.39 -0.02 1.08 16 38 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 39 H 0.04 1.19 8.14 -2.38 -0.02 1.17 16 40 H 0.42 7.78 8.47 -92.71 -0.79 6.99 16 41 H 0.35 12.42 7.55 -89.69 -0.68 11.75 16 42 H 0.34 12.39 8.58 -89.69 -0.77 11.62 16 43 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 44 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 45 H 0.00 0.15 6.87 -2.39 -0.02 0.13 16 46 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 47 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 48 H 0.11 2.77 7.65 -2.91 -0.02 2.75 16 Total: -1.00 -80.60 404.37 -1.45 -82.04 By element: Atomic # 1 Polarization: 33.99 SS G_CDS: -1.86 Total: 32.13 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: 5.08 Total: -2.97 kcal Atomic # 7 Polarization: -109.19 SS G_CDS: -6.58 Total: -115.78 kcal Atomic # 8 Polarization: -41.29 SS G_CDS: -0.11 Total: -41.40 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -80.60 -1.45 -82.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349092566.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.224 kcal (2) G-P(sol) polarization free energy of solvation -80.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds