Wall clock time and date at job start Tue Mar 31 2020 17:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35908 * 117.00119 * 2 1 4 4 C 1.39136 * 120.47630 * 179.97438 * 3 2 1 5 5 C 1.38531 * 118.37753 * 179.75499 * 4 3 2 6 6 C 1.38256 * 119.22205 * 0.52834 * 5 4 3 7 7 C 1.50702 * 119.56034 * 179.73423 * 6 5 4 8 8 H 1.09002 * 109.99371 * 325.08332 * 7 6 5 9 9 C 1.54321 * 109.88196 * 86.17815 * 7 6 5 10 10 C 1.55157 * 103.10033 * 141.52155 * 9 7 6 11 11 C 1.55122 * 101.48763 * 324.71656 * 10 9 7 12 12 N 1.47018 * 109.88078 * 203.99013 * 7 6 5 13 13 C 1.34771 * 125.65276 * 61.67606 * 12 7 6 14 14 O 1.21289 * 119.99862 * 359.97438 * 13 12 7 15 15 C 1.50696 * 120.00378 * 179.97438 * 13 12 7 16 16 H 1.08997 * 109.47537 * 39.99866 * 15 13 12 17 17 N 1.46898 * 109.47469 * 160.00197 * 15 13 12 18 18 C 1.52999 * 109.47122 * 280.00070 * 15 13 12 19 19 C 1.52998 * 109.47526 * 175.00164 * 18 15 13 20 20 C 1.50697 * 109.47586 * 180.02562 * 19 18 15 21 21 H 1.07997 * 120.00106 * 359.97438 * 20 19 18 22 22 C 1.37873 * 120.00127 * 179.97438 * 20 19 18 23 23 N 1.31512 * 120.00440 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 120.00048 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.46929 * 60.00057 * 24 22 20 26 26 H 1.48499 * 109.47123 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47143 * 299.99991 * 24 22 20 28 28 N 1.31846 * 120.88320 * 359.45186 * 6 5 4 29 29 C 1.31849 * 121.77908 * 0.28218 * 28 6 5 30 30 H 1.08995 * 109.47444 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46824 * 300.00197 * 1 2 3 32 32 H 1.08999 * 109.47144 * 59.99456 * 1 2 3 33 33 H 1.08001 * 120.80803 * 0.02562 * 4 3 2 34 34 H 1.08004 * 120.39235 * 180.25976 * 5 4 3 35 35 H 1.09002 * 110.72109 * 259.97535 * 9 7 6 36 36 H 1.09003 * 110.72356 * 23.07361 * 9 7 6 37 37 H 1.09002 * 111.00409 * 82.66048 * 10 9 7 38 38 H 1.09000 * 111.00529 * 206.51165 * 10 9 7 39 39 H 1.09000 * 110.20879 * 277.95655 * 11 10 9 40 40 H 1.09001 * 110.51127 * 155.74626 * 11 10 9 41 41 H 1.00894 * 111.00481 * 59.99443 * 17 15 13 42 42 H 1.00901 * 111.00385 * 183.95603 * 17 15 13 43 43 H 1.09000 * 109.47338 * 294.99840 * 18 15 13 44 44 H 1.08996 * 109.47467 * 54.99908 * 18 15 13 45 45 H 1.09007 * 109.46699 * 299.99757 * 19 18 15 46 46 H 1.08996 * 109.47645 * 59.99137 * 19 18 15 47 47 H 0.96997 * 120.00513 * 180.02562 * 23 22 20 48 48 H 1.08007 * 119.65139 * 179.97438 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 3.4349 1.2953 0.0005 5 6 4.0182 2.5518 -0.0047 6 6 3.2080 3.6721 0.0009 7 6 3.8346 5.0427 0.0013 8 1 4.7557 5.0312 0.5840 9 6 4.1350 5.4829 -1.4469 10 6 3.7897 6.9955 -1.4336 11 6 2.5816 7.0279 -0.4611 12 7 2.8958 6.0213 0.5692 13 6 2.4045 6.0020 1.8241 14 8 2.7338 5.1217 2.5907 15 6 1.4461 7.0740 2.2747 16 1 0.7487 7.3004 1.4681 17 7 0.7001 6.6019 3.4488 18 6 2.2287 8.3364 2.6415 19 6 1.2502 9.4631 2.9793 20 6 2.0210 10.7067 3.3399 21 1 3.1009 10.6947 3.3297 22 6 1.3477 11.8599 3.6829 23 7 0.0327 11.8749 3.6949 24 14 2.3033 13.4014 4.1307 25 1 3.1513 13.8093 2.9819 26 1 1.3535 14.4952 4.4572 27 1 3.1647 13.1251 5.3084 28 7 1.8946 3.5574 0.0003 29 6 1.3003 2.3804 -0.0002 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 4.0432 0.4029 0.0005 34 1 5.0933 2.6551 -0.0087 35 1 5.1873 5.3296 -1.6862 36 1 3.4988 4.9483 -2.1524 37 1 4.6206 7.5825 -1.0422 38 1 3.5041 7.3398 -2.4275 39 1 1.6665 6.7583 -0.9883 40 1 2.4815 8.0148 -0.0092 41 1 1.3247 6.3852 4.2110 42 1 0.0054 7.2770 3.7313 43 1 2.8614 8.1336 3.5056 44 1 2.8508 8.6362 1.7982 45 1 0.6176 9.6660 2.1151 46 1 0.6280 9.1634 3.8225 47 1 -0.4410 12.6863 3.9359 48 1 0.2216 2.3265 -0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001355487817.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:37 Heat of formation + Delta-G solvation = -39.799858 kcal Electronic energy + Delta-G solvation = -29119.708389 eV Core-core repulsion = 25174.673376 eV Total energy + Delta-G solvation = -3945.035012 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.00305 -39.86126 -38.33239 -37.16791 -35.35055 -32.82378 -32.57010 -31.76266 -31.36298 -29.83292 -28.39426 -27.48000 -26.46962 -24.45499 -23.76818 -23.02042 -22.15957 -21.10766 -20.21697 -18.88722 -18.32939 -17.40218 -17.29983 -16.36424 -16.24271 -16.09906 -15.78506 -14.85805 -14.58281 -14.46019 -14.36865 -14.21339 -14.18047 -13.85110 -13.57079 -13.24156 -13.17225 -13.08400 -12.81359 -12.41850 -12.28129 -12.19369 -11.91179 -11.84434 -11.60321 -11.36054 -11.27796 -10.99167 -10.90175 -10.84776 -10.68109 -9.91854 -9.84065 -9.82934 -9.49038 -9.24448 -9.10636 -8.57591 -8.41534 -8.34729 -8.07971 -6.06210 -4.09301 0.98065 1.17569 2.92408 3.06238 3.19452 3.29531 3.34397 3.36879 3.64980 4.15028 4.40724 4.44168 4.48014 4.53849 4.61709 4.75029 4.85486 4.89547 4.95650 5.12541 5.14880 5.19799 5.24718 5.28847 5.30754 5.37796 5.44643 5.59499 5.69226 5.71438 5.72424 5.81205 5.83761 5.91026 5.92541 6.11379 6.32504 6.35866 6.47962 6.60566 6.92546 6.97181 7.52616 7.57374 7.66262 7.83537 7.91060 7.95611 7.99184 8.34005 8.62405 8.96515 9.55328 11.04664 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.018845 B = 0.002668 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.465374 B =10493.426588 C =11335.532500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.315 6.315 3 C 0.068 3.932 4 C -0.107 4.107 5 C -0.126 4.126 6 C 0.097 3.903 7 C 0.192 3.808 8 H 0.089 0.911 9 C -0.120 4.120 10 C -0.131 4.131 11 C 0.096 3.904 12 N -0.603 5.603 13 C 0.551 3.449 14 O -0.538 6.538 15 C 0.081 3.919 16 H 0.094 0.906 17 N -0.830 5.830 18 C -0.138 4.138 19 C 0.026 3.974 20 C -0.523 4.523 21 H 0.054 0.946 22 C 0.059 3.941 23 N -0.893 5.893 24 Si 0.892 3.108 25 H -0.277 1.277 26 H -0.287 1.287 27 H -0.277 1.277 28 N -0.423 5.423 29 C 0.027 3.973 30 H 0.102 0.898 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.140 0.860 34 H 0.140 0.860 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.069 0.931 40 H 0.088 0.912 41 H 0.344 0.656 42 H 0.353 0.647 43 H 0.053 0.947 44 H 0.057 0.943 45 H 0.018 0.982 46 H 0.017 0.983 47 H 0.262 0.738 48 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.261 -19.972 -13.579 24.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.227 6.227 3 C 0.021 3.979 4 C -0.133 4.133 5 C -0.146 4.146 6 C -0.043 4.043 7 C 0.087 3.913 8 H 0.106 0.894 9 C -0.159 4.159 10 C -0.169 4.169 11 C -0.027 4.027 12 N -0.338 5.338 13 C 0.341 3.659 14 O -0.413 6.413 15 C -0.034 4.034 16 H 0.112 0.888 17 N -0.362 5.362 18 C -0.177 4.177 19 C -0.012 4.012 20 C -0.561 4.561 21 H 0.072 0.928 22 C -0.143 4.143 23 N -0.532 5.532 24 Si 0.720 3.280 25 H -0.202 1.202 26 H -0.212 1.212 27 H -0.202 1.202 28 N -0.132 5.132 29 C -0.132 4.132 30 H 0.120 0.880 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.158 0.842 34 H 0.158 0.842 35 H 0.102 0.898 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.104 0.896 39 H 0.087 0.913 40 H 0.107 0.893 41 H 0.157 0.843 42 H 0.168 0.832 43 H 0.072 0.928 44 H 0.075 0.925 45 H 0.036 0.964 46 H 0.035 0.965 47 H 0.072 0.928 48 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 4.542 -20.385 -13.484 24.860 hybrid contribution 1.007 1.045 0.752 1.634 sum 5.549 -19.340 -12.732 23.810 Atomic orbital electron populations 1.23111 0.77992 1.04198 1.01770 1.86045 1.21673 1.26224 1.88781 1.20063 0.93278 0.85711 0.98893 1.20814 0.91639 0.98615 1.02274 1.21691 1.01275 0.91667 1.00000 1.21316 0.89494 0.95465 0.98009 1.20314 0.91980 0.84087 0.94954 0.89352 1.22662 1.02329 0.96665 0.94221 1.22815 0.98449 0.95571 1.00041 1.22454 0.97852 0.93086 0.89317 1.48239 1.46728 1.27140 1.11701 1.20430 0.80284 0.85849 0.79358 1.90617 1.59824 1.37919 1.52956 1.21400 0.94690 0.91648 0.95623 0.88791 1.58711 1.19142 1.49265 1.09044 1.22396 0.99763 0.94769 1.00806 1.19087 0.93824 0.91426 0.96815 1.21143 0.92963 0.95668 1.46353 0.92803 1.25006 0.94864 0.98926 0.95483 1.69937 1.06448 1.28373 1.48469 0.86656 0.79709 0.82638 0.78995 1.20216 1.21242 1.20249 1.67277 1.11424 1.26102 1.08395 1.22886 1.00424 0.87059 1.02803 0.87997 0.92230 0.92453 0.84177 0.84232 0.89781 0.90504 0.90198 0.89620 0.91262 0.89335 0.84322 0.83218 0.92828 0.92485 0.96365 0.96468 0.92846 0.82778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.82 101.05 0.99 1.16 16 2 O -0.31 -3.33 10.51 -19.45 -0.20 -3.53 16 3 C 0.07 0.80 6.71 -39.08 -0.26 0.54 16 4 C -0.11 -1.17 10.13 -39.14 -0.40 -1.56 16 5 C -0.13 -1.39 9.76 -39.47 -0.39 -1.78 16 6 C 0.10 1.30 5.04 -82.58 -0.42 0.89 16 7 C 0.19 2.40 3.10 -68.11 -0.21 2.18 16 8 H 0.09 1.09 8.12 -51.93 -0.42 0.67 16 9 C -0.12 -1.07 6.46 -24.90 -0.16 -1.23 16 10 C -0.13 -1.19 7.11 -24.47 -0.17 -1.36 16 11 C 0.10 1.18 6.40 -2.41 -0.02 1.16 16 12 N -0.60 -8.97 2.70 -164.18 -0.44 -9.42 16 13 C 0.55 10.11 6.57 -10.99 -0.07 10.03 16 14 O -0.54 -11.40 16.09 5.55 0.09 -11.31 16 15 C 0.08 1.50 2.49 -68.87 -0.17 1.33 16 16 H 0.09 1.70 7.68 -51.93 -0.40 1.30 16 17 N -0.83 -15.44 8.94 -5.66 -0.05 -15.49 16 18 C -0.14 -2.80 4.63 -26.73 -0.12 -2.92 16 19 C 0.03 0.63 4.74 -27.89 -0.13 0.50 16 20 C -0.52 -14.42 9.11 -34.44 -0.31 -14.73 16 21 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 22 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 23 N -0.89 -26.16 13.29 55.43 0.74 -25.43 16 24 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 27 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 28 N -0.42 -6.32 9.43 -9.35 -0.09 -6.40 16 29 C 0.03 0.35 10.22 -17.37 -0.18 0.17 16 30 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.42 7.68 -51.93 -0.40 0.02 16 32 H 0.06 0.34 7.68 -51.93 -0.40 -0.06 16 33 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 34 H 0.14 1.12 8.06 -52.48 -0.42 0.70 16 35 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.08 0.69 7.84 -51.93 -0.41 0.29 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.09 1.18 6.04 -51.93 -0.31 0.86 16 41 H 0.34 6.47 8.58 -39.29 -0.34 6.13 16 42 H 0.35 6.48 7.55 -39.29 -0.30 6.19 16 43 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.06 1.11 6.59 -51.93 -0.34 0.76 16 45 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 46 H 0.02 0.44 6.87 -51.93 -0.36 0.08 16 47 H 0.26 7.28 8.31 -40.82 -0.34 6.95 16 48 H 0.16 1.69 6.32 -52.48 -0.33 1.36 16 LS Contribution 389.66 15.07 5.87 5.87 Total: -1.00 -34.57 389.66 -8.58 -43.15 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: -7.35 Total: 10.31 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: -2.12 Total: -4.06 kcal Atomic # 7 Polarization: -56.89 SS G_CDS: 0.15 Total: -56.74 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: -0.12 Total: -14.84 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.57 -8.58 -43.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355487817.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.345 kcal (2) G-P(sol) polarization free energy of solvation -34.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds