Wall clock time and date at job start Tue Mar 31 2020 17:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35908 * 117.00119 * 2 1 4 4 C 1.39136 * 120.47630 * 179.97438 * 3 2 1 5 5 C 1.38531 * 118.37753 * 179.75499 * 4 3 2 6 6 C 1.38256 * 119.22205 * 0.52834 * 5 4 3 7 7 C 1.50702 * 119.56034 * 179.73423 * 6 5 4 8 8 H 1.09002 * 109.99371 * 325.08332 * 7 6 5 9 9 C 1.54321 * 109.88196 * 86.17815 * 7 6 5 10 10 C 1.55157 * 103.10033 * 141.52155 * 9 7 6 11 11 C 1.55122 * 101.48763 * 324.71656 * 10 9 7 12 12 N 1.47018 * 109.88078 * 203.99013 * 7 6 5 13 13 C 1.34771 * 125.65276 * 61.67606 * 12 7 6 14 14 O 1.21289 * 119.99862 * 359.97438 * 13 12 7 15 15 C 1.50696 * 120.00378 * 179.97438 * 13 12 7 16 16 H 1.08997 * 109.47537 * 39.99866 * 15 13 12 17 17 N 1.46898 * 109.47469 * 160.00197 * 15 13 12 18 18 C 1.52999 * 109.47122 * 280.00070 * 15 13 12 19 19 C 1.52998 * 109.47526 * 175.00164 * 18 15 13 20 20 C 1.50697 * 109.47586 * 180.02562 * 19 18 15 21 21 H 1.07997 * 120.00106 * 359.97438 * 20 19 18 22 22 C 1.37873 * 120.00127 * 179.97438 * 20 19 18 23 23 N 1.31512 * 120.00440 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 120.00048 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.46929 * 60.00057 * 24 22 20 26 26 H 1.48499 * 109.47123 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47143 * 299.99991 * 24 22 20 28 28 N 1.31846 * 120.88320 * 359.45186 * 6 5 4 29 29 C 1.31849 * 121.77908 * 0.28218 * 28 6 5 30 30 H 1.08995 * 109.47444 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46824 * 300.00197 * 1 2 3 32 32 H 1.08999 * 109.47144 * 59.99456 * 1 2 3 33 33 H 1.08001 * 120.80803 * 0.02562 * 4 3 2 34 34 H 1.08004 * 120.39235 * 180.25976 * 5 4 3 35 35 H 1.09002 * 110.72109 * 259.97535 * 9 7 6 36 36 H 1.09003 * 110.72356 * 23.07361 * 9 7 6 37 37 H 1.09002 * 111.00409 * 82.66048 * 10 9 7 38 38 H 1.09000 * 111.00529 * 206.51165 * 10 9 7 39 39 H 1.09000 * 110.20879 * 277.95655 * 11 10 9 40 40 H 1.09001 * 110.51127 * 155.74626 * 11 10 9 41 41 H 1.00894 * 111.00481 * 59.99443 * 17 15 13 42 42 H 1.00901 * 111.00385 * 183.95603 * 17 15 13 43 43 H 1.09000 * 109.47338 * 294.99840 * 18 15 13 44 44 H 1.08996 * 109.47467 * 54.99908 * 18 15 13 45 45 H 1.09007 * 109.46699 * 299.99757 * 19 18 15 46 46 H 1.08996 * 109.47645 * 59.99137 * 19 18 15 47 47 H 0.96997 * 120.00513 * 180.02562 * 23 22 20 48 48 H 1.08007 * 119.65139 * 179.97438 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 3.4349 1.2953 0.0005 5 6 4.0182 2.5518 -0.0047 6 6 3.2080 3.6721 0.0009 7 6 3.8346 5.0427 0.0013 8 1 4.7557 5.0312 0.5840 9 6 4.1350 5.4829 -1.4469 10 6 3.7897 6.9955 -1.4336 11 6 2.5816 7.0279 -0.4611 12 7 2.8958 6.0213 0.5692 13 6 2.4045 6.0020 1.8241 14 8 2.7338 5.1217 2.5907 15 6 1.4461 7.0740 2.2747 16 1 0.7487 7.3004 1.4681 17 7 0.7001 6.6019 3.4488 18 6 2.2287 8.3364 2.6415 19 6 1.2502 9.4631 2.9793 20 6 2.0210 10.7067 3.3399 21 1 3.1009 10.6947 3.3297 22 6 1.3477 11.8599 3.6829 23 7 0.0327 11.8749 3.6949 24 14 2.3033 13.4014 4.1307 25 1 3.1513 13.8093 2.9819 26 1 1.3535 14.4952 4.4572 27 1 3.1647 13.1251 5.3084 28 7 1.8946 3.5574 0.0003 29 6 1.3003 2.3804 -0.0002 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 4.0432 0.4029 0.0005 34 1 5.0933 2.6551 -0.0087 35 1 5.1873 5.3296 -1.6862 36 1 3.4988 4.9483 -2.1524 37 1 4.6206 7.5825 -1.0422 38 1 3.5041 7.3398 -2.4275 39 1 1.6665 6.7583 -0.9883 40 1 2.4815 8.0148 -0.0092 41 1 1.3247 6.3852 4.2110 42 1 0.0054 7.2770 3.7313 43 1 2.8614 8.1336 3.5056 44 1 2.8508 8.6362 1.7982 45 1 0.6176 9.6660 2.1151 46 1 0.6280 9.1634 3.8225 47 1 -0.4410 12.6863 3.9359 48 1 0.2216 2.3265 -0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001355487817.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:36 Heat of formation + Delta-G solvation = -63.936220 kcal Electronic energy + Delta-G solvation = -29120.755020 eV Core-core repulsion = 25174.673376 eV Total energy + Delta-G solvation = -3946.081644 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.93815 -40.98181 -39.32071 -38.22342 -37.02431 -34.84410 -33.44906 -32.78275 -32.29794 -31.70267 -29.22991 -28.25332 -28.09813 -26.01266 -24.85145 -24.03550 -23.23567 -22.31649 -21.62394 -20.12438 -19.16063 -18.82204 -18.26825 -18.17857 -17.25829 -17.03339 -16.82938 -16.48329 -15.96234 -15.82694 -15.56044 -15.36633 -15.09393 -14.94499 -14.82283 -14.64012 -14.15518 -14.08954 -14.01656 -13.82346 -13.58611 -13.38995 -13.08210 -12.90070 -12.81014 -12.65046 -12.60793 -12.51898 -12.12975 -12.08231 -11.79870 -11.68843 -11.61553 -11.31920 -10.71698 -10.68301 -10.55451 -10.39001 -9.73524 -9.59405 -9.30233 -8.20720 -6.31635 0.10076 0.30056 1.40243 1.42187 1.50156 1.67832 1.98768 2.21611 2.40532 2.74475 3.12621 3.27186 3.49044 3.63642 3.70245 3.74614 3.77847 3.88077 4.02946 4.10623 4.16686 4.23725 4.31175 4.31900 4.32561 4.43708 4.56593 4.60182 4.62183 4.69989 4.78425 4.84220 4.88502 4.95073 5.01179 5.05651 5.08495 5.13094 5.35285 5.41915 5.46278 5.50899 5.63763 5.80008 6.05663 6.18882 6.20772 6.44676 6.55494 6.83122 7.02447 7.25406 7.37434 8.90036 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.018845 B = 0.002668 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.465374 B =10493.426588 C =11335.532500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.324 6.324 3 C 0.065 3.935 4 C -0.112 4.112 5 C -0.123 4.123 6 C 0.075 3.925 7 C 0.182 3.818 8 H 0.091 0.909 9 C -0.107 4.107 10 C -0.120 4.120 11 C 0.086 3.914 12 N -0.599 5.599 13 C 0.549 3.451 14 O -0.573 6.573 15 C 0.088 3.912 16 H 0.095 0.905 17 N -0.830 5.830 18 C -0.117 4.117 19 C 0.034 3.966 20 C -0.544 4.544 21 H 0.056 0.944 22 C 0.005 3.995 23 N -0.928 5.928 24 Si 0.960 3.040 25 H -0.265 1.265 26 H -0.283 1.283 27 H -0.271 1.271 28 N -0.457 5.457 29 C 0.006 3.994 30 H 0.127 0.873 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.165 0.835 34 H 0.171 0.829 35 H 0.115 0.885 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.109 0.891 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.342 0.658 42 H 0.351 0.649 43 H 0.042 0.958 44 H 0.067 0.933 45 H 0.000 1.000 46 H 0.000 1.000 47 H 0.264 0.736 48 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.203 -20.365 -15.064 26.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.236 6.236 3 C 0.017 3.983 4 C -0.138 4.138 5 C -0.143 4.143 6 C -0.065 4.065 7 C 0.077 3.923 8 H 0.108 0.892 9 C -0.145 4.145 10 C -0.158 4.158 11 C -0.036 4.036 12 N -0.332 5.332 13 C 0.338 3.662 14 O -0.452 6.452 15 C -0.027 4.027 16 H 0.113 0.887 17 N -0.361 5.361 18 C -0.157 4.157 19 C -0.004 4.004 20 C -0.582 4.582 21 H 0.074 0.926 22 C -0.193 4.193 23 N -0.567 5.567 24 Si 0.785 3.215 25 H -0.190 1.190 26 H -0.209 1.209 27 H -0.197 1.197 28 N -0.167 5.167 29 C -0.152 4.152 30 H 0.145 0.855 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.183 0.817 34 H 0.188 0.812 35 H 0.134 0.866 36 H 0.095 0.905 37 H 0.104 0.896 38 H 0.128 0.872 39 H 0.088 0.912 40 H 0.093 0.907 41 H 0.155 0.845 42 H 0.166 0.834 43 H 0.061 0.939 44 H 0.085 0.915 45 H 0.018 0.982 46 H 0.018 0.982 47 H 0.073 0.927 48 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 6.491 -20.784 -15.018 26.451 hybrid contribution 0.335 1.095 1.186 1.649 sum 6.826 -19.689 -13.832 25.012 Atomic orbital electron populations 1.23371 0.76332 1.05985 1.02069 1.86036 1.23439 1.25598 1.88540 1.20202 0.93905 0.85798 0.98396 1.21200 0.91583 0.99584 1.01416 1.22018 1.02665 0.90970 0.98603 1.21556 0.89476 0.96482 0.98940 1.20662 0.91169 0.83422 0.97003 0.89163 1.22665 1.04238 0.95998 0.91609 1.22823 0.96834 0.95992 1.00158 1.22653 0.99833 0.91702 0.89389 1.48254 1.46027 1.27981 1.10935 1.20201 0.80270 0.85291 0.80456 1.90588 1.61163 1.39099 1.54333 1.21294 0.94653 0.91210 0.95540 0.88659 1.58716 1.19118 1.49117 1.09137 1.22118 0.98706 0.94251 1.00638 1.18931 0.93983 0.92209 0.95247 1.21560 0.93358 0.96906 1.46369 0.92601 1.25882 0.95798 1.02325 0.95312 1.70061 1.08032 1.29342 1.49309 0.85578 0.78397 0.78499 0.79054 1.18980 1.20851 1.19654 1.67204 1.12557 1.27229 1.09695 1.23063 1.01075 0.87269 1.03749 0.85476 0.92584 0.91531 0.81728 0.81176 0.86625 0.90502 0.89641 0.87247 0.91177 0.90655 0.84467 0.83372 0.93871 0.91481 0.98161 0.98211 0.92716 0.82071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.82 113.37 1.11 1.33 16 2 O -0.32 -6.52 10.51 -92.51 -0.97 -7.50 16 3 C 0.06 1.49 6.71 22.60 0.15 1.64 16 4 C -0.11 -2.25 10.13 22.56 0.23 -2.02 16 5 C -0.12 -2.49 9.76 22.34 0.22 -2.28 16 6 C 0.08 1.95 5.04 42.56 0.21 2.16 16 7 C 0.18 4.28 3.10 44.60 0.14 4.42 16 8 H 0.09 2.08 8.12 -2.39 -0.02 2.06 16 9 C -0.11 -1.60 6.46 31.78 0.21 -1.39 16 10 C -0.12 -1.87 7.11 32.06 0.23 -1.64 16 11 C 0.09 2.06 6.40 86.93 0.56 2.62 16 12 N -0.60 -17.60 2.70 -791.75 -2.14 -19.74 16 13 C 0.55 20.39 6.57 87.66 0.58 20.96 16 14 O -0.57 -24.73 16.09 -3.06 -0.05 -24.78 16 15 C 0.09 3.34 2.49 44.17 0.11 3.45 16 16 H 0.10 3.56 7.68 -2.39 -0.02 3.54 16 17 N -0.83 -31.93 8.94 -171.81 -1.54 -33.47 16 18 C -0.12 -4.86 4.63 30.59 0.14 -4.72 16 19 C 0.03 1.69 4.74 29.85 0.14 1.83 16 20 C -0.54 -30.22 9.11 25.60 0.23 -29.99 16 21 H 0.06 3.01 7.74 -2.91 -0.02 2.99 16 22 C 0.01 0.30 5.46 84.65 0.46 0.76 16 23 N -0.93 -55.01 13.29 21.45 0.28 -54.72 16 24 Si 0.96 43.52 29.54 68.60 2.03 45.55 16 25 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 26 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 27 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 28 N -0.46 -13.70 9.43 -183.48 -1.73 -15.43 16 29 C 0.01 0.17 10.22 84.80 0.87 1.03 16 30 H 0.13 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.06 0.77 7.68 -2.38 -0.02 0.75 16 32 H 0.07 0.74 7.68 -2.39 -0.02 0.73 16 33 H 0.17 2.38 8.06 -2.91 -0.02 2.36 16 34 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16 35 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.08 1.19 7.84 -2.39 -0.02 1.17 16 37 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.08 1.99 6.04 -2.39 -0.01 1.97 16 41 H 0.34 13.35 8.58 -89.70 -0.77 12.58 16 42 H 0.35 13.48 7.55 -89.69 -0.68 12.81 16 43 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.07 2.61 6.59 -2.39 -0.02 2.60 16 45 H 0.00 0.00 8.14 -2.38 -0.02 -0.02 16 46 H 0.00 -0.02 6.87 -2.39 -0.02 -0.04 16 47 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 48 H 0.16 3.65 6.32 -2.91 -0.02 3.63 16 Total: -1.00 -75.51 389.66 1.01 -74.50 By element: Atomic # 1 Polarization: 37.85 SS G_CDS: -0.46 Total: 37.39 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: 5.58 Total: -1.82 kcal Atomic # 7 Polarization: -118.23 SS G_CDS: -5.12 Total: -123.35 kcal Atomic # 8 Polarization: -31.25 SS G_CDS: -1.02 Total: -32.27 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -75.51 1.01 -74.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355487817.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.565 kcal (2) G-P(sol) polarization free energy of solvation -75.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds