Wall clock time and date at job start Tue Mar 31 2020 17:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35914 * 116.99724 * 2 1 4 4 C 1.39139 * 120.47088 * 180.02562 * 3 2 1 5 5 C 1.38540 * 118.37100 * 179.72969 * 4 3 2 6 6 C 1.38255 * 119.22125 * 0.48910 * 5 4 3 7 7 C 1.50701 * 119.55372 * 179.77532 * 6 5 4 8 8 H 1.09002 * 109.87500 * 34.02582 * 7 6 5 9 9 C 1.54324 * 109.88182 * 273.00840 * 7 6 5 10 10 C 1.55549 * 102.75997 * 218.26721 * 9 7 6 11 11 C 1.54903 * 101.59848 * 35.53443 * 10 9 7 12 12 N 1.47020 * 109.88177 * 155.04376 * 7 6 5 13 13 C 1.34784 * 125.64907 * 298.54646 * 12 7 6 14 14 O 1.21286 * 119.99597 * 0.02562 * 13 12 7 15 15 C 1.50695 * 119.99961 * 180.02562 * 13 12 7 16 16 H 1.09002 * 109.47262 * 319.99247 * 15 13 12 17 17 N 1.46910 * 109.46747 * 199.99848 * 15 13 12 18 18 C 1.53001 * 109.47219 * 80.00068 * 15 13 12 19 19 C 1.52996 * 109.46870 * 184.99580 * 18 15 13 20 20 C 1.50703 * 109.46949 * 179.97438 * 19 18 15 21 21 H 1.07992 * 120.00256 * 0.02562 * 20 19 18 22 22 C 1.37880 * 119.99867 * 180.02562 * 20 19 18 23 23 N 1.31516 * 120.00166 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99793 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.46896 * 359.97438 * 24 22 20 26 26 H 1.48492 * 109.47168 * 119.99716 * 24 22 20 27 27 H 1.48497 * 109.46705 * 239.99974 * 24 22 20 28 28 N 1.31839 * 120.88680 * 359.49692 * 6 5 4 29 29 C 1.31846 * 121.78349 * 0.25520 * 28 6 5 30 30 H 1.08997 * 109.47041 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47319 * 300.00258 * 1 2 3 32 32 H 1.09003 * 109.47154 * 60.00249 * 1 2 3 33 33 H 1.08000 * 120.81494 * 359.97438 * 4 3 2 34 34 H 1.08006 * 120.38940 * 180.26896 * 5 4 3 35 35 H 1.09003 * 110.72146 * 336.60250 * 9 7 6 36 36 H 1.08999 * 110.72099 * 99.87453 * 9 7 6 37 37 H 1.08992 * 111.03039 * 277.44036 * 10 9 7 38 38 H 1.09001 * 110.96288 * 153.60045 * 10 9 7 39 39 H 1.09003 * 110.37077 * 204.11646 * 11 10 9 40 40 H 1.09004 * 110.46419 * 81.83630 * 11 10 9 41 41 H 1.00900 * 110.99725 * 176.04378 * 17 15 13 42 42 H 1.00892 * 110.99740 * 299.99925 * 17 15 13 43 43 H 1.08996 * 109.46563 * 304.99697 * 18 15 13 44 44 H 1.09000 * 109.47116 * 64.99920 * 18 15 13 45 45 H 1.08997 * 109.47844 * 299.99972 * 19 18 15 46 46 H 1.09000 * 109.46973 * 60.00253 * 19 18 15 47 47 H 0.97002 * 119.99816 * 180.02562 * 23 22 20 48 48 H 1.07992 * 119.66315 * 180.02562 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 3.4348 1.2953 -0.0005 5 6 4.0180 2.5520 -0.0063 6 6 3.2078 3.6722 -0.0009 7 6 3.8343 5.0428 -0.0020 8 1 4.7583 5.0274 -0.5799 9 6 4.1285 5.4864 1.4466 10 6 3.7854 7.0033 1.4177 11 6 2.5811 7.0317 0.4438 12 7 2.8994 6.0194 -0.5796 13 6 2.4133 5.9933 -1.8364 14 8 2.7444 5.1079 -2.5963 15 6 1.4583 7.0640 -2.2974 16 1 0.7579 7.2962 -1.4950 17 7 0.7165 6.5859 -3.4718 18 6 2.2444 8.3231 -2.6685 19 6 1.2689 9.4491 -3.0170 20 6 2.0432 10.6894 -3.3819 21 1 3.1229 10.6759 -3.3672 22 6 1.3729 11.8416 -3.7347 23 7 0.0580 11.8580 -3.7531 24 14 2.3327 13.3789 -4.1877 25 1 3.7880 13.1006 -4.0896 26 1 1.9975 13.7800 -5.5776 27 1 1.9754 14.4781 -3.2554 28 7 1.8944 3.5574 -0.0004 29 6 1.3001 2.3805 0.0000 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 4.0432 0.4030 -0.0005 34 1 5.0931 2.6553 -0.0112 35 1 3.4853 4.9577 2.1501 36 1 5.1792 5.3313 1.6915 37 1 4.6190 7.5855 1.0252 38 1 3.4959 7.3566 2.4074 39 1 2.4861 8.0166 -0.0134 40 1 1.6620 6.7667 0.9665 41 1 0.0240 7.2603 -3.7612 42 1 1.3440 6.3639 -4.2300 43 1 2.8634 8.6269 -1.8243 44 1 2.8803 8.1141 -3.5287 45 1 0.6499 9.1453 -3.8611 46 1 0.6330 9.6581 -2.1567 47 1 -0.4135 12.6685 -4.0016 48 1 0.2215 2.3264 0.0000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001355487818.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:40 Heat of formation + Delta-G solvation = -39.805494 kcal Electronic energy + Delta-G solvation = -29121.191554 eV Core-core repulsion = 25176.156297 eV Total energy + Delta-G solvation = -3945.035257 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.00171 -39.86070 -38.33154 -37.16506 -35.35197 -32.82533 -32.56804 -31.76312 -31.35015 -29.83438 -28.39824 -27.48175 -26.47139 -24.45141 -23.76870 -23.01994 -22.15509 -21.11479 -20.21863 -18.88793 -18.32824 -17.40293 -17.30076 -16.36110 -16.24550 -16.09934 -15.78717 -14.85832 -14.57873 -14.45786 -14.36643 -14.21173 -14.18041 -13.85202 -13.57256 -13.24299 -13.16960 -13.08732 -12.81503 -12.41916 -12.28691 -12.19365 -11.90870 -11.83659 -11.60332 -11.35047 -11.28739 -11.01563 -10.90537 -10.86373 -10.64135 -9.92735 -9.84212 -9.82996 -9.48975 -9.22333 -9.10507 -8.57966 -8.42364 -8.34425 -8.08161 -6.06764 -4.09599 0.98225 1.17601 2.92481 3.06108 3.19446 3.26983 3.35022 3.38972 3.65135 4.15250 4.40510 4.43456 4.48089 4.53967 4.62514 4.75039 4.85504 4.89743 4.95701 5.12520 5.14907 5.19897 5.24735 5.28663 5.30580 5.37588 5.44377 5.59421 5.69109 5.71461 5.72320 5.81120 5.83676 5.91051 5.92846 6.11547 6.32633 6.35758 6.47932 6.60492 6.92400 6.97235 7.52647 7.57344 7.66044 7.83422 7.90884 7.95661 7.99036 8.33782 8.62273 8.96704 9.55157 11.04175 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.018838 B = 0.002668 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.989765 B =10491.024538 C =11331.994617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.315 6.315 3 C 0.068 3.932 4 C -0.107 4.107 5 C -0.126 4.126 6 C 0.097 3.903 7 C 0.192 3.808 8 H 0.088 0.912 9 C -0.120 4.120 10 C -0.131 4.131 11 C 0.096 3.904 12 N -0.603 5.603 13 C 0.551 3.449 14 O -0.538 6.538 15 C 0.081 3.919 16 H 0.094 0.906 17 N -0.830 5.830 18 C -0.138 4.138 19 C 0.025 3.975 20 C -0.521 4.521 21 H 0.055 0.945 22 C 0.058 3.942 23 N -0.893 5.893 24 Si 0.892 3.108 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.283 1.283 28 N -0.423 5.423 29 C 0.027 3.973 30 H 0.102 0.898 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.140 0.860 34 H 0.140 0.860 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.069 0.931 41 H 0.353 0.647 42 H 0.344 0.656 43 H 0.057 0.943 44 H 0.053 0.947 45 H 0.017 0.983 46 H 0.018 0.982 47 H 0.261 0.739 48 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.209 -19.923 13.702 24.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.227 6.227 3 C 0.021 3.979 4 C -0.134 4.134 5 C -0.146 4.146 6 C -0.043 4.043 7 C 0.086 3.914 8 H 0.106 0.894 9 C -0.159 4.159 10 C -0.169 4.169 11 C -0.027 4.027 12 N -0.338 5.338 13 C 0.341 3.659 14 O -0.413 6.413 15 C -0.034 4.034 16 H 0.112 0.888 17 N -0.362 5.362 18 C -0.177 4.177 19 C -0.012 4.012 20 C -0.560 4.560 21 H 0.073 0.927 22 C -0.143 4.143 23 N -0.532 5.532 24 Si 0.719 3.281 25 H -0.198 1.198 26 H -0.210 1.210 27 H -0.210 1.210 28 N -0.132 5.132 29 C -0.132 4.132 30 H 0.120 0.880 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.158 0.842 34 H 0.158 0.842 35 H 0.095 0.905 36 H 0.103 0.897 37 H 0.098 0.902 38 H 0.103 0.897 39 H 0.106 0.894 40 H 0.088 0.912 41 H 0.168 0.832 42 H 0.157 0.843 43 H 0.075 0.925 44 H 0.072 0.928 45 H 0.035 0.965 46 H 0.036 0.964 47 H 0.070 0.930 48 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 4.498 -20.341 13.610 24.884 hybrid contribution 0.983 1.047 -0.767 1.629 sum 5.482 -19.294 12.843 23.817 Atomic orbital electron populations 1.23110 0.77997 1.04198 1.01767 1.86046 1.21671 1.26223 1.88781 1.20068 0.93278 0.85709 0.98880 1.20818 0.91639 0.98613 1.02294 1.21697 1.01279 0.91667 0.99947 1.21321 0.89490 0.95478 0.98027 1.20315 0.92043 0.84103 0.94898 0.89384 1.22734 1.02332 0.96591 0.94194 1.22845 0.98460 0.95551 1.00025 1.22421 0.97851 0.92972 0.89461 1.48250 1.46933 1.26974 1.11664 1.20436 0.80252 0.85895 0.79353 1.90616 1.59632 1.37589 1.53476 1.21405 0.94745 0.91646 0.95573 0.88791 1.58717 1.19296 1.48995 1.09152 1.22394 0.99730 0.94796 1.00797 1.19099 0.93866 0.91473 0.96797 1.21219 0.93039 0.95806 1.45895 0.92695 1.25016 0.94868 0.98941 0.95523 1.69964 1.06531 1.28219 1.48496 0.86542 0.80226 0.83152 0.78137 1.19767 1.20979 1.20958 1.67270 1.11428 1.26107 1.08395 1.22882 1.00419 0.87059 1.02819 0.87999 0.92448 0.92238 0.84179 0.84236 0.90469 0.89741 0.90174 0.89660 0.89358 0.91224 0.83220 0.84324 0.92484 0.92826 0.96455 0.96353 0.92968 0.82783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.82 101.05 0.99 1.16 16 2 O -0.31 -3.33 10.51 -19.47 -0.20 -3.54 16 3 C 0.07 0.81 6.71 -39.07 -0.26 0.54 16 4 C -0.11 -1.17 10.13 -39.14 -0.40 -1.57 16 5 C -0.13 -1.39 9.76 -39.46 -0.39 -1.78 16 6 C 0.10 1.30 5.03 -82.58 -0.41 0.88 16 7 C 0.19 2.39 3.09 -68.10 -0.21 2.18 16 8 H 0.09 1.08 8.11 -51.93 -0.42 0.66 16 9 C -0.12 -1.07 6.49 -24.68 -0.16 -1.23 16 10 C -0.13 -1.19 7.10 -24.37 -0.17 -1.36 16 11 C 0.10 1.18 6.39 -2.53 -0.02 1.16 16 12 N -0.60 -8.97 2.70 -164.32 -0.44 -9.41 16 13 C 0.55 10.10 6.57 -10.98 -0.07 10.03 16 14 O -0.54 -11.39 16.08 5.55 0.09 -11.30 16 15 C 0.08 1.50 2.49 -68.86 -0.17 1.33 16 16 H 0.09 1.70 7.68 -51.93 -0.40 1.30 16 17 N -0.83 -15.43 8.94 -5.65 -0.05 -15.48 16 18 C -0.14 -2.79 4.64 -26.73 -0.12 -2.92 16 19 C 0.02 0.61 4.74 -27.88 -0.13 0.48 16 20 C -0.52 -14.36 9.11 -34.44 -0.31 -14.67 16 21 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 22 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 23 N -0.89 -26.14 13.29 55.43 0.74 -25.41 16 24 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 25 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 26 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 27 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 28 N -0.42 -6.31 9.44 -9.35 -0.09 -6.40 16 29 C 0.03 0.35 10.22 -17.37 -0.18 0.17 16 30 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.34 7.68 -51.93 -0.40 -0.06 16 32 H 0.06 0.42 7.68 -51.93 -0.40 0.02 16 33 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 34 H 0.14 1.13 8.06 -52.48 -0.42 0.71 16 35 H 0.08 0.70 7.84 -51.93 -0.41 0.29 16 36 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.09 1.17 6.05 -51.93 -0.31 0.86 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.35 6.48 7.55 -39.29 -0.30 6.19 16 42 H 0.34 6.47 8.58 -39.30 -0.34 6.13 16 43 H 0.06 1.11 6.59 -51.93 -0.34 0.76 16 44 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.02 0.44 6.87 -51.93 -0.36 0.09 16 46 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 48 H 0.16 1.69 6.32 -52.49 -0.33 1.35 16 LS Contribution 389.67 15.07 5.87 5.87 Total: -1.00 -34.61 389.67 -8.58 -43.18 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -7.35 Total: 10.24 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: -2.11 Total: -4.06 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: 0.15 Total: -56.70 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -0.12 Total: -14.84 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.61 -8.58 -43.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355487818.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.378 kcal (2) G-P(sol) polarization free energy of solvation -34.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds