Wall clock time and date at job start Tue Mar 31 2020 17:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35914 * 116.99724 * 2 1 4 4 C 1.39139 * 120.47088 * 180.02562 * 3 2 1 5 5 C 1.38540 * 118.37100 * 179.72969 * 4 3 2 6 6 C 1.38255 * 119.22125 * 0.48910 * 5 4 3 7 7 C 1.50701 * 119.55372 * 179.77532 * 6 5 4 8 8 H 1.09002 * 109.87500 * 34.02582 * 7 6 5 9 9 C 1.54324 * 109.88182 * 273.00840 * 7 6 5 10 10 C 1.55549 * 102.75997 * 218.26721 * 9 7 6 11 11 C 1.54903 * 101.59848 * 35.53443 * 10 9 7 12 12 N 1.47020 * 109.88177 * 155.04376 * 7 6 5 13 13 C 1.34784 * 125.64907 * 298.54646 * 12 7 6 14 14 O 1.21286 * 119.99597 * 0.02562 * 13 12 7 15 15 C 1.50695 * 119.99961 * 180.02562 * 13 12 7 16 16 H 1.09002 * 109.47262 * 319.99247 * 15 13 12 17 17 N 1.46910 * 109.46747 * 199.99848 * 15 13 12 18 18 C 1.53001 * 109.47219 * 80.00068 * 15 13 12 19 19 C 1.52996 * 109.46870 * 184.99580 * 18 15 13 20 20 C 1.50703 * 109.46949 * 179.97438 * 19 18 15 21 21 H 1.07992 * 120.00256 * 0.02562 * 20 19 18 22 22 C 1.37880 * 119.99867 * 180.02562 * 20 19 18 23 23 N 1.31516 * 120.00166 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99793 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.46896 * 359.97438 * 24 22 20 26 26 H 1.48492 * 109.47168 * 119.99716 * 24 22 20 27 27 H 1.48497 * 109.46705 * 239.99974 * 24 22 20 28 28 N 1.31839 * 120.88680 * 359.49692 * 6 5 4 29 29 C 1.31846 * 121.78349 * 0.25520 * 28 6 5 30 30 H 1.08997 * 109.47041 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47319 * 300.00258 * 1 2 3 32 32 H 1.09003 * 109.47154 * 60.00249 * 1 2 3 33 33 H 1.08000 * 120.81494 * 359.97438 * 4 3 2 34 34 H 1.08006 * 120.38940 * 180.26896 * 5 4 3 35 35 H 1.09003 * 110.72146 * 336.60250 * 9 7 6 36 36 H 1.08999 * 110.72099 * 99.87453 * 9 7 6 37 37 H 1.08992 * 111.03039 * 277.44036 * 10 9 7 38 38 H 1.09001 * 110.96288 * 153.60045 * 10 9 7 39 39 H 1.09003 * 110.37077 * 204.11646 * 11 10 9 40 40 H 1.09004 * 110.46419 * 81.83630 * 11 10 9 41 41 H 1.00900 * 110.99725 * 176.04378 * 17 15 13 42 42 H 1.00892 * 110.99740 * 299.99925 * 17 15 13 43 43 H 1.08996 * 109.46563 * 304.99697 * 18 15 13 44 44 H 1.09000 * 109.47116 * 64.99920 * 18 15 13 45 45 H 1.08997 * 109.47844 * 299.99972 * 19 18 15 46 46 H 1.09000 * 109.46973 * 60.00253 * 19 18 15 47 47 H 0.97002 * 119.99816 * 180.02562 * 23 22 20 48 48 H 1.07992 * 119.66315 * 180.02562 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 3.4348 1.2953 -0.0005 5 6 4.0180 2.5520 -0.0063 6 6 3.2078 3.6722 -0.0009 7 6 3.8343 5.0428 -0.0020 8 1 4.7583 5.0274 -0.5799 9 6 4.1285 5.4864 1.4466 10 6 3.7854 7.0033 1.4177 11 6 2.5811 7.0317 0.4438 12 7 2.8994 6.0194 -0.5796 13 6 2.4133 5.9933 -1.8364 14 8 2.7444 5.1079 -2.5963 15 6 1.4583 7.0640 -2.2974 16 1 0.7579 7.2962 -1.4950 17 7 0.7165 6.5859 -3.4718 18 6 2.2444 8.3231 -2.6685 19 6 1.2689 9.4491 -3.0170 20 6 2.0432 10.6894 -3.3819 21 1 3.1229 10.6759 -3.3672 22 6 1.3729 11.8416 -3.7347 23 7 0.0580 11.8580 -3.7531 24 14 2.3327 13.3789 -4.1877 25 1 3.7880 13.1006 -4.0896 26 1 1.9975 13.7800 -5.5776 27 1 1.9754 14.4781 -3.2554 28 7 1.8944 3.5574 -0.0004 29 6 1.3001 2.3805 0.0000 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 4.0432 0.4030 -0.0005 34 1 5.0931 2.6553 -0.0112 35 1 3.4853 4.9577 2.1501 36 1 5.1792 5.3313 1.6915 37 1 4.6190 7.5855 1.0252 38 1 3.4959 7.3566 2.4074 39 1 2.4861 8.0166 -0.0134 40 1 1.6620 6.7667 0.9665 41 1 0.0240 7.2603 -3.7612 42 1 1.3440 6.3639 -4.2300 43 1 2.8634 8.6269 -1.8243 44 1 2.8803 8.1141 -3.5287 45 1 0.6499 9.1453 -3.8611 46 1 0.6330 9.6581 -2.1567 47 1 -0.4135 12.6685 -4.0016 48 1 0.2215 2.3264 0.0000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001355487818.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:39 Heat of formation + Delta-G solvation = -63.973958 kcal Electronic energy + Delta-G solvation = -29122.239577 eV Core-core repulsion = 25176.156297 eV Total energy + Delta-G solvation = -3946.083280 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.93740 -40.98130 -39.31933 -38.22121 -37.02494 -34.84505 -33.44755 -32.77971 -32.28903 -31.70332 -29.23374 -28.25357 -28.10131 -26.01091 -24.84969 -24.03403 -23.23202 -22.32149 -21.62707 -20.12378 -19.16042 -18.82458 -18.27050 -18.18239 -17.25370 -17.03519 -16.82874 -16.47724 -15.96298 -15.82829 -15.55989 -15.36507 -15.09383 -14.94356 -14.82516 -14.65001 -14.15275 -14.08987 -14.02001 -13.82637 -13.58440 -13.38848 -13.07666 -12.92753 -12.81006 -12.66833 -12.59619 -12.48132 -12.11954 -12.09010 -11.80932 -11.69529 -11.62353 -11.28741 -10.71929 -10.68028 -10.56581 -10.39032 -9.73730 -9.59532 -9.30077 -8.21220 -6.31835 0.10111 0.29984 1.39097 1.40422 1.52575 1.67787 1.98822 2.21609 2.40258 2.74550 3.12321 3.27403 3.48870 3.63694 3.70206 3.74606 3.78046 3.88087 4.02797 4.10579 4.17056 4.23741 4.31350 4.31985 4.32526 4.43716 4.56340 4.60084 4.61901 4.69980 4.78288 4.84273 4.88412 4.94914 5.01448 5.05729 5.08450 5.13218 5.35470 5.41974 5.46570 5.50907 5.63678 5.80043 6.05571 6.18875 6.20664 6.44680 6.55478 6.83298 7.02438 7.25358 7.37312 8.89934 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.018838 B = 0.002668 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.989765 B =10491.024538 C =11331.994617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.324 6.324 3 C 0.065 3.935 4 C -0.112 4.112 5 C -0.123 4.123 6 C 0.075 3.925 7 C 0.181 3.819 8 H 0.090 0.910 9 C -0.106 4.106 10 C -0.121 4.121 11 C 0.087 3.913 12 N -0.600 5.600 13 C 0.549 3.451 14 O -0.573 6.573 15 C 0.088 3.912 16 H 0.096 0.904 17 N -0.830 5.830 18 C -0.117 4.117 19 C 0.033 3.967 20 C -0.542 4.542 21 H 0.055 0.945 22 C 0.005 3.995 23 N -0.928 5.928 24 Si 0.960 3.040 25 H -0.265 1.265 26 H -0.281 1.281 27 H -0.276 1.276 28 N -0.457 5.457 29 C 0.006 3.994 30 H 0.127 0.873 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.165 0.835 34 H 0.170 0.830 35 H 0.076 0.924 36 H 0.116 0.884 37 H 0.085 0.915 38 H 0.109 0.891 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.351 0.649 42 H 0.342 0.658 43 H 0.067 0.933 44 H 0.042 0.958 45 H 0.000 1.000 46 H 0.000 1.000 47 H 0.264 0.736 48 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.100 -20.307 15.175 26.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.236 6.236 3 C 0.017 3.983 4 C -0.138 4.138 5 C -0.143 4.143 6 C -0.065 4.065 7 C 0.077 3.923 8 H 0.108 0.892 9 C -0.145 4.145 10 C -0.158 4.158 11 C -0.036 4.036 12 N -0.332 5.332 13 C 0.338 3.662 14 O -0.452 6.452 15 C -0.027 4.027 16 H 0.113 0.887 17 N -0.361 5.361 18 C -0.157 4.157 19 C -0.004 4.004 20 C -0.580 4.580 21 H 0.074 0.926 22 C -0.194 4.194 23 N -0.568 5.568 24 Si 0.785 3.215 25 H -0.189 1.189 26 H -0.206 1.206 27 H -0.202 1.202 28 N -0.167 5.167 29 C -0.152 4.152 30 H 0.145 0.855 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.183 0.817 34 H 0.188 0.812 35 H 0.095 0.905 36 H 0.134 0.866 37 H 0.104 0.896 38 H 0.127 0.873 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.166 0.834 42 H 0.155 0.845 43 H 0.085 0.915 44 H 0.061 0.939 45 H 0.018 0.982 46 H 0.019 0.981 47 H 0.073 0.927 48 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 6.395 -20.730 15.131 26.450 hybrid contribution 0.327 1.097 -1.198 1.657 sum 6.722 -19.633 13.934 24.996 Atomic orbital electron populations 1.23369 0.76335 1.05986 1.02070 1.86037 1.23441 1.25595 1.88541 1.20207 0.93901 0.85801 0.98387 1.21201 0.91587 0.99572 1.01432 1.22024 1.02665 0.90992 0.98582 1.21560 0.89470 0.96487 0.98943 1.20663 0.91238 0.83444 0.96937 0.89191 1.22739 1.04231 0.95910 0.91581 1.22851 0.96874 0.95980 1.00128 1.22621 0.99805 0.91588 0.89543 1.48266 1.46225 1.27823 1.10897 1.20208 0.80236 0.85334 0.80458 1.90587 1.60975 1.38766 1.54845 1.21298 0.94701 0.91208 0.95494 0.88651 1.58723 1.19270 1.48847 1.09246 1.22116 0.98682 0.94279 1.00623 1.18941 0.94009 0.92235 0.95252 1.21612 0.93350 0.97049 1.45939 0.92632 1.25887 0.95816 1.02302 0.95370 1.70079 1.08108 1.29267 1.49305 0.85465 0.79073 0.79068 0.77852 1.18868 1.20638 1.20151 1.67198 1.12552 1.27228 1.09690 1.23061 1.01074 0.87267 1.03751 0.85479 0.91518 0.92591 0.81736 0.81209 0.90480 0.86594 0.89622 0.87289 0.90667 0.91134 0.83372 0.84467 0.91489 0.93874 0.98186 0.98135 0.92733 0.82064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.82 113.37 1.11 1.33 16 2 O -0.32 -6.53 10.51 -92.59 -0.97 -7.50 16 3 C 0.06 1.49 6.71 22.60 0.15 1.64 16 4 C -0.11 -2.26 10.13 22.56 0.23 -2.03 16 5 C -0.12 -2.51 9.76 22.35 0.22 -2.29 16 6 C 0.08 1.95 5.03 42.56 0.21 2.16 16 7 C 0.18 4.28 3.09 44.60 0.14 4.42 16 8 H 0.09 2.07 8.11 -2.39 -0.02 2.05 16 9 C -0.11 -1.59 6.49 31.92 0.21 -1.38 16 10 C -0.12 -1.87 7.10 32.12 0.23 -1.64 16 11 C 0.09 2.06 6.39 86.85 0.56 2.62 16 12 N -0.60 -17.59 2.70 -792.17 -2.14 -19.73 16 13 C 0.55 20.37 6.57 87.65 0.58 20.94 16 14 O -0.57 -24.70 16.08 -3.05 -0.05 -24.75 16 15 C 0.09 3.33 2.49 44.17 0.11 3.44 16 16 H 0.10 3.56 7.68 -2.39 -0.02 3.54 16 17 N -0.83 -31.90 8.94 -171.79 -1.54 -33.44 16 18 C -0.12 -4.85 4.64 30.59 0.14 -4.71 16 19 C 0.03 1.66 4.74 29.85 0.14 1.80 16 20 C -0.54 -30.08 9.11 25.60 0.23 -29.84 16 21 H 0.06 3.01 7.74 -2.91 -0.02 2.99 16 22 C 0.00 0.26 5.46 84.66 0.46 0.72 16 23 N -0.93 -54.93 13.29 21.45 0.28 -54.65 16 24 Si 0.96 43.57 29.54 68.60 2.03 45.60 16 25 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 26 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 27 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 28 N -0.46 -13.68 9.44 -183.49 -1.73 -15.41 16 29 C 0.01 0.17 10.22 84.80 0.87 1.04 16 30 H 0.13 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.07 0.74 7.68 -2.39 -0.02 0.73 16 32 H 0.06 0.77 7.68 -2.39 -0.02 0.75 16 33 H 0.17 2.39 8.06 -2.91 -0.02 2.37 16 34 H 0.17 2.25 8.06 -2.91 -0.02 2.23 16 35 H 0.08 1.19 7.84 -2.39 -0.02 1.18 16 36 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.07 1.98 6.05 -2.39 -0.01 1.96 16 40 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.35 13.47 7.55 -89.69 -0.68 12.79 16 42 H 0.34 13.34 8.58 -89.70 -0.77 12.57 16 43 H 0.07 2.61 6.59 -2.39 -0.02 2.60 16 44 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 45 H 0.00 -0.01 6.87 -2.39 -0.02 -0.02 16 46 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 47 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 48 H 0.16 3.64 6.32 -2.91 -0.02 3.63 16 Total: -1.00 -75.53 389.67 1.01 -74.52 By element: Atomic # 1 Polarization: 37.61 SS G_CDS: -0.46 Total: 37.15 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: 5.59 Total: -1.79 kcal Atomic # 7 Polarization: -118.10 SS G_CDS: -5.12 Total: -123.23 kcal Atomic # 8 Polarization: -31.23 SS G_CDS: -1.02 Total: -32.25 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -75.53 1.01 -74.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355487818.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.547 kcal (2) G-P(sol) polarization free energy of solvation -75.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds