Wall clock time and date at job start Tue Mar 31 2020 17:38:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42898 * 1
3 3 C 1.35914 * 116.99724 * 2 1
4 4 C 1.39139 * 120.47088 * 180.02562 * 3 2 1
5 5 C 1.38540 * 118.37100 * 179.72969 * 4 3 2
6 6 C 1.38255 * 119.22125 * 0.48910 * 5 4 3
7 7 C 1.50701 * 119.55372 * 179.77532 * 6 5 4
8 8 H 1.09002 * 109.87500 * 34.02582 * 7 6 5
9 9 C 1.54324 * 109.88182 * 273.00840 * 7 6 5
10 10 C 1.55549 * 102.75997 * 218.26721 * 9 7 6
11 11 C 1.54903 * 101.59848 * 35.53443 * 10 9 7
12 12 N 1.47020 * 109.88177 * 155.04376 * 7 6 5
13 13 C 1.34784 * 125.64907 * 298.54646 * 12 7 6
14 14 O 1.21286 * 119.99597 * 0.02562 * 13 12 7
15 15 C 1.50695 * 119.99961 * 180.02562 * 13 12 7
16 16 H 1.09002 * 109.47262 * 319.99247 * 15 13 12
17 17 N 1.46910 * 109.46747 * 199.99848 * 15 13 12
18 18 C 1.53001 * 109.47219 * 80.00068 * 15 13 12
19 19 C 1.52996 * 109.46870 * 184.99580 * 18 15 13
20 20 C 1.50703 * 109.46949 * 179.97438 * 19 18 15
21 21 H 1.07992 * 120.00256 * 0.02562 * 20 19 18
22 22 C 1.37880 * 119.99867 * 180.02562 * 20 19 18
23 23 N 1.31516 * 120.00166 * 359.97438 * 22 20 19
24 24 Si 1.86805 * 119.99793 * 180.02562 * 22 20 19
25 25 H 1.48497 * 109.46896 * 359.97438 * 24 22 20
26 26 H 1.48492 * 109.47168 * 119.99716 * 24 22 20
27 27 H 1.48497 * 109.46705 * 239.99974 * 24 22 20
28 28 N 1.31839 * 120.88680 * 359.49692 * 6 5 4
29 29 C 1.31846 * 121.78349 * 0.25520 * 28 6 5
30 30 H 1.08997 * 109.47041 * 179.97438 * 1 2 3
31 31 H 1.08997 * 109.47319 * 300.00258 * 1 2 3
32 32 H 1.09003 * 109.47154 * 60.00249 * 1 2 3
33 33 H 1.08000 * 120.81494 * 359.97438 * 4 3 2
34 34 H 1.08006 * 120.38940 * 180.26896 * 5 4 3
35 35 H 1.09003 * 110.72146 * 336.60250 * 9 7 6
36 36 H 1.08999 * 110.72099 * 99.87453 * 9 7 6
37 37 H 1.08992 * 111.03039 * 277.44036 * 10 9 7
38 38 H 1.09001 * 110.96288 * 153.60045 * 10 9 7
39 39 H 1.09003 * 110.37077 * 204.11646 * 11 10 9
40 40 H 1.09004 * 110.46419 * 81.83630 * 11 10 9
41 41 H 1.00900 * 110.99725 * 176.04378 * 17 15 13
42 42 H 1.00892 * 110.99740 * 299.99925 * 17 15 13
43 43 H 1.08996 * 109.46563 * 304.99697 * 18 15 13
44 44 H 1.09000 * 109.47116 * 64.99920 * 18 15 13
45 45 H 1.08997 * 109.47844 * 299.99972 * 19 18 15
46 46 H 1.09000 * 109.46973 * 60.00253 * 19 18 15
47 47 H 0.97002 * 119.99816 * 180.02562 * 23 22 20
48 48 H 1.07992 * 119.66315 * 180.02562 * 29 28 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0460 1.2110 0.0000
4 6 3.4348 1.2953 -0.0005
5 6 4.0180 2.5520 -0.0063
6 6 3.2078 3.6722 -0.0009
7 6 3.8343 5.0428 -0.0020
8 1 4.7583 5.0274 -0.5799
9 6 4.1285 5.4864 1.4466
10 6 3.7854 7.0033 1.4177
11 6 2.5811 7.0317 0.4438
12 7 2.8994 6.0194 -0.5796
13 6 2.4133 5.9933 -1.8364
14 8 2.7444 5.1079 -2.5963
15 6 1.4583 7.0640 -2.2974
16 1 0.7579 7.2962 -1.4950
17 7 0.7165 6.5859 -3.4718
18 6 2.2444 8.3231 -2.6685
19 6 1.2689 9.4491 -3.0170
20 6 2.0432 10.6894 -3.3819
21 1 3.1229 10.6759 -3.3672
22 6 1.3729 11.8416 -3.7347
23 7 0.0580 11.8580 -3.7531
24 14 2.3327 13.3789 -4.1877
25 1 3.7880 13.1006 -4.0896
26 1 1.9975 13.7800 -5.5776
27 1 1.9754 14.4781 -3.2554
28 7 1.8944 3.5574 -0.0004
29 6 1.3001 2.3805 0.0000
30 1 -0.3633 -1.0276 -0.0005
31 1 -0.3634 0.5139 0.8899
32 1 -0.3633 0.5138 -0.8900
33 1 4.0432 0.4030 -0.0005
34 1 5.0931 2.6553 -0.0112
35 1 3.4853 4.9577 2.1501
36 1 5.1792 5.3313 1.6915
37 1 4.6190 7.5855 1.0252
38 1 3.4959 7.3566 2.4074
39 1 2.4861 8.0166 -0.0134
40 1 1.6620 6.7667 0.9665
41 1 0.0240 7.2603 -3.7612
42 1 1.3440 6.3639 -4.2300
43 1 2.8634 8.6269 -1.8243
44 1 2.8803 8.1141 -3.5287
45 1 0.6499 9.1453 -3.8611
46 1 0.6330 9.6581 -2.1567
47 1 -0.4135 12.6685 -4.0016
48 1 0.2215 2.3264 0.0000
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001355487818.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 17:38:39
Heat of formation + Delta-G solvation = -63.973958 kcal
Electronic energy + Delta-G solvation = -29122.239577 eV
Core-core repulsion = 25176.156297 eV
Total energy + Delta-G solvation = -3946.083280 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 333.184 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-41.93740 -40.98130 -39.31933 -38.22121 -37.02494 -34.84505 -33.44755 -32.77971
-32.28903 -31.70332 -29.23374 -28.25357 -28.10131 -26.01091 -24.84969 -24.03403
-23.23202 -22.32149 -21.62707 -20.12378 -19.16042 -18.82458 -18.27050 -18.18239
-17.25370 -17.03519 -16.82874 -16.47724 -15.96298 -15.82829 -15.55989 -15.36507
-15.09383 -14.94356 -14.82516 -14.65001 -14.15275 -14.08987 -14.02001 -13.82637
-13.58440 -13.38848 -13.07666 -12.92753 -12.81006 -12.66833 -12.59619 -12.48132
-12.11954 -12.09010 -11.80932 -11.69529 -11.62353 -11.28741 -10.71929 -10.68028
-10.56581 -10.39032 -9.73730 -9.59532 -9.30077 -8.21220 -6.31835 0.10111
0.29984 1.39097 1.40422 1.52575 1.67787 1.98822 2.21609 2.40258
2.74550 3.12321 3.27403 3.48870 3.63694 3.70206 3.74606 3.78046
3.88087 4.02797 4.10579 4.17056 4.23741 4.31350 4.31985 4.32526
4.43716 4.56340 4.60084 4.61901 4.69980 4.78288 4.84273 4.88412
4.94914 5.01448 5.05729 5.08450 5.13218 5.35470 5.41974 5.46570
5.50907 5.63678 5.80043 6.05571 6.18875 6.20664 6.44680 6.55478
6.83298 7.02438 7.25358 7.37312 8.89934
Molecular weight = 333.18amu
Principal moments of inertia in cm(-1)
A = 0.018838 B = 0.002668 C = 0.002470
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1485.989765 B =10491.024538 C =11331.994617
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.017 3.983
2 O -0.324 6.324
3 C 0.065 3.935
4 C -0.112 4.112
5 C -0.123 4.123
6 C 0.075 3.925
7 C 0.181 3.819
8 H 0.090 0.910
9 C -0.106 4.106
10 C -0.121 4.121
11 C 0.087 3.913
12 N -0.600 5.600
13 C 0.549 3.451
14 O -0.573 6.573
15 C 0.088 3.912
16 H 0.096 0.904
17 N -0.830 5.830
18 C -0.117 4.117
19 C 0.033 3.967
20 C -0.542 4.542
21 H 0.055 0.945
22 C 0.005 3.995
23 N -0.928 5.928
24 Si 0.960 3.040
25 H -0.265 1.265
26 H -0.281 1.281
27 H -0.276 1.276
28 N -0.457 5.457
29 C 0.006 3.994
30 H 0.127 0.873
31 H 0.066 0.934
32 H 0.055 0.945
33 H 0.165 0.835
34 H 0.170 0.830
35 H 0.076 0.924
36 H 0.116 0.884
37 H 0.085 0.915
38 H 0.109 0.891
39 H 0.075 0.925
40 H 0.070 0.930
41 H 0.351 0.649
42 H 0.342 0.658
43 H 0.067 0.933
44 H 0.042 0.958
45 H 0.000 1.000
46 H 0.000 1.000
47 H 0.264 0.736
48 H 0.162 0.838
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.100 -20.307 15.175 26.326
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.078 4.078
2 O -0.236 6.236
3 C 0.017 3.983
4 C -0.138 4.138
5 C -0.143 4.143
6 C -0.065 4.065
7 C 0.077 3.923
8 H 0.108 0.892
9 C -0.145 4.145
10 C -0.158 4.158
11 C -0.036 4.036
12 N -0.332 5.332
13 C 0.338 3.662
14 O -0.452 6.452
15 C -0.027 4.027
16 H 0.113 0.887
17 N -0.361 5.361
18 C -0.157 4.157
19 C -0.004 4.004
20 C -0.580 4.580
21 H 0.074 0.926
22 C -0.194 4.194
23 N -0.568 5.568
24 Si 0.785 3.215
25 H -0.189 1.189
26 H -0.206 1.206
27 H -0.202 1.202
28 N -0.167 5.167
29 C -0.152 4.152
30 H 0.145 0.855
31 H 0.085 0.915
32 H 0.074 0.926
33 H 0.183 0.817
34 H 0.188 0.812
35 H 0.095 0.905
36 H 0.134 0.866
37 H 0.104 0.896
38 H 0.127 0.873
39 H 0.093 0.907
40 H 0.089 0.911
41 H 0.166 0.834
42 H 0.155 0.845
43 H 0.085 0.915
44 H 0.061 0.939
45 H 0.018 0.982
46 H 0.019 0.981
47 H 0.073 0.927
48 H 0.179 0.821
Dipole moment (debyes) X Y Z Total
from point charges 6.395 -20.730 15.131 26.450
hybrid contribution 0.327 1.097 -1.198 1.657
sum 6.722 -19.633 13.934 24.996
Atomic orbital electron populations
1.23369 0.76335 1.05986 1.02070 1.86037 1.23441 1.25595 1.88541
1.20207 0.93901 0.85801 0.98387 1.21201 0.91587 0.99572 1.01432
1.22024 1.02665 0.90992 0.98582 1.21560 0.89470 0.96487 0.98943
1.20663 0.91238 0.83444 0.96937 0.89191 1.22739 1.04231 0.95910
0.91581 1.22851 0.96874 0.95980 1.00128 1.22621 0.99805 0.91588
0.89543 1.48266 1.46225 1.27823 1.10897 1.20208 0.80236 0.85334
0.80458 1.90587 1.60975 1.38766 1.54845 1.21298 0.94701 0.91208
0.95494 0.88651 1.58723 1.19270 1.48847 1.09246 1.22116 0.98682
0.94279 1.00623 1.18941 0.94009 0.92235 0.95252 1.21612 0.93350
0.97049 1.45939 0.92632 1.25887 0.95816 1.02302 0.95370 1.70079
1.08108 1.29267 1.49305 0.85465 0.79073 0.79068 0.77852 1.18868
1.20638 1.20151 1.67198 1.12552 1.27228 1.09690 1.23061 1.01074
0.87267 1.03751 0.85479 0.91518 0.92591 0.81736 0.81209 0.90480
0.86594 0.89622 0.87289 0.90667 0.91134 0.83372 0.84467 0.91489
0.93874 0.98186 0.98135 0.92733 0.82064
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.22 9.82 113.37 1.11 1.33 16
2 O -0.32 -6.53 10.51 -92.59 -0.97 -7.50 16
3 C 0.06 1.49 6.71 22.60 0.15 1.64 16
4 C -0.11 -2.26 10.13 22.56 0.23 -2.03 16
5 C -0.12 -2.51 9.76 22.35 0.22 -2.29 16
6 C 0.08 1.95 5.03 42.56 0.21 2.16 16
7 C 0.18 4.28 3.09 44.60 0.14 4.42 16
8 H 0.09 2.07 8.11 -2.39 -0.02 2.05 16
9 C -0.11 -1.59 6.49 31.92 0.21 -1.38 16
10 C -0.12 -1.87 7.10 32.12 0.23 -1.64 16
11 C 0.09 2.06 6.39 86.85 0.56 2.62 16
12 N -0.60 -17.59 2.70 -792.17 -2.14 -19.73 16
13 C 0.55 20.37 6.57 87.65 0.58 20.94 16
14 O -0.57 -24.70 16.08 -3.05 -0.05 -24.75 16
15 C 0.09 3.33 2.49 44.17 0.11 3.44 16
16 H 0.10 3.56 7.68 -2.39 -0.02 3.54 16
17 N -0.83 -31.90 8.94 -171.79 -1.54 -33.44 16
18 C -0.12 -4.85 4.64 30.59 0.14 -4.71 16
19 C 0.03 1.66 4.74 29.85 0.14 1.80 16
20 C -0.54 -30.08 9.11 25.60 0.23 -29.84 16
21 H 0.06 3.01 7.74 -2.91 -0.02 2.99 16
22 C 0.00 0.26 5.46 84.66 0.46 0.72 16
23 N -0.93 -54.93 13.29 21.45 0.28 -54.65 16
24 Si 0.96 43.57 29.54 68.60 2.03 45.60 16
25 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16
26 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16
27 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16
28 N -0.46 -13.68 9.44 -183.49 -1.73 -15.41 16
29 C 0.01 0.17 10.22 84.80 0.87 1.04 16
30 H 0.13 0.98 8.14 -2.39 -0.02 0.96 16
31 H 0.07 0.74 7.68 -2.39 -0.02 0.73 16
32 H 0.06 0.77 7.68 -2.39 -0.02 0.75 16
33 H 0.17 2.39 8.06 -2.91 -0.02 2.37 16
34 H 0.17 2.25 8.06 -2.91 -0.02 2.23 16
35 H 0.08 1.19 7.84 -2.39 -0.02 1.18 16
36 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16
37 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16
38 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16
39 H 0.07 1.98 6.05 -2.39 -0.01 1.96 16
40 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16
41 H 0.35 13.47 7.55 -89.69 -0.68 12.79 16
42 H 0.34 13.34 8.58 -89.70 -0.77 12.57 16
43 H 0.07 2.61 6.59 -2.39 -0.02 2.60 16
44 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16
45 H 0.00 -0.01 6.87 -2.39 -0.02 -0.02 16
46 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16
47 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16
48 H 0.16 3.64 6.32 -2.91 -0.02 3.63 16
Total: -1.00 -75.53 389.67 1.01 -74.52
By element:
Atomic # 1 Polarization: 37.61 SS G_CDS: -0.46 Total: 37.15 kcal
Atomic # 6 Polarization: -7.37 SS G_CDS: 5.59 Total: -1.79 kcal
Atomic # 7 Polarization: -118.10 SS G_CDS: -5.12 Total: -123.23 kcal
Atomic # 8 Polarization: -31.23 SS G_CDS: -1.02 Total: -32.25 kcal
Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal
Total: -75.53 1.01 -74.52 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001355487818.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 10.547 kcal
(2) G-P(sol) polarization free energy of solvation -75.526 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.979 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.005 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.521 kcal
(6) G-S(sol) free energy of system = (1) + (5) -63.974 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds