Wall clock time and date at job start Tue Mar 31 2020 17:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35915 * 116.99727 * 2 1 4 4 C 1.39142 * 120.46851 * 179.97438 * 3 2 1 5 5 C 1.38531 * 118.37114 * 179.97438 * 4 3 2 6 6 C 1.38254 * 119.22310 * 359.97438 * 5 4 3 7 7 C 1.50701 * 119.55876 * 179.97438 * 6 5 4 8 8 H 1.08998 * 110.00005 * 326.10108 * 7 6 5 9 9 C 1.54330 * 109.87929 * 87.19576 * 7 6 5 10 10 C 1.55164 * 102.94081 * 141.61330 * 9 7 6 11 11 C 1.54910 * 101.57954 * 324.49447 * 10 9 7 12 12 N 1.47026 * 109.88567 * 205.00071 * 7 6 5 13 13 C 1.34775 * 125.64611 * 61.60758 * 12 7 6 14 14 O 1.21286 * 120.00071 * 0.02562 * 13 12 7 15 15 C 1.50698 * 120.00166 * 180.02562 * 13 12 7 16 16 H 1.08998 * 109.47145 * 320.00113 * 15 13 12 17 17 N 1.46898 * 109.47240 * 200.00007 * 15 13 12 18 18 C 1.53002 * 109.46919 * 79.99846 * 15 13 12 19 19 C 1.53006 * 109.46958 * 184.99908 * 18 15 13 20 20 C 1.50699 * 109.47090 * 179.97438 * 19 18 15 21 21 H 1.07996 * 119.99747 * 0.02562 * 20 19 18 22 22 C 1.37877 * 119.99728 * 179.97438 * 20 19 18 23 23 N 1.31515 * 119.99846 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 120.00281 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47280 * 89.99676 * 24 22 20 26 26 H 1.48500 * 109.46875 * 209.99825 * 24 22 20 27 27 H 1.48501 * 109.46791 * 329.99458 * 24 22 20 28 28 N 1.31852 * 120.88598 * 0.26184 * 6 5 4 29 29 C 1.31842 * 121.77949 * 359.46833 * 28 6 5 30 30 H 1.09004 * 109.47007 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46822 * 299.99672 * 1 2 3 32 32 H 1.09003 * 109.46956 * 59.99827 * 1 2 3 33 33 H 1.07996 * 120.81509 * 0.02562 * 4 3 2 34 34 H 1.07999 * 120.39113 * 179.97438 * 5 4 3 35 35 H 1.08999 * 110.71554 * 259.97262 * 9 7 6 36 36 H 1.08995 * 110.72298 * 23.24919 * 9 7 6 37 37 H 1.08999 * 110.99996 * 206.42134 * 10 9 7 38 38 H 1.08992 * 111.03715 * 82.58261 * 10 9 7 39 39 H 1.08996 * 110.36628 * 278.17334 * 11 10 9 40 40 H 1.09004 * 110.45781 * 155.89909 * 11 10 9 41 41 H 1.00896 * 110.99955 * 300.00014 * 17 15 13 42 42 H 1.00904 * 110.99787 * 63.95355 * 17 15 13 43 43 H 1.08991 * 109.47135 * 305.00112 * 18 15 13 44 44 H 1.09000 * 109.46741 * 65.00494 * 18 15 13 45 45 H 1.08994 * 109.47306 * 300.00580 * 19 18 15 46 46 H 1.09006 * 109.46818 * 60.00252 * 19 18 15 47 47 H 0.96994 * 120.00222 * 180.02562 * 23 22 20 48 48 H 1.07997 * 119.66194 * 180.26933 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 3.4349 1.2953 0.0005 5 6 4.0181 2.5518 0.0000 6 6 3.2079 3.6721 -0.0016 7 6 3.8344 5.0427 -0.0017 8 1 4.7619 5.0287 0.5707 9 6 4.1189 5.4896 -1.4512 10 6 3.7749 7.0024 -1.4222 11 6 2.5764 7.0300 -0.4411 12 7 2.9020 6.0188 0.5810 13 6 2.4234 5.9928 1.8406 14 8 2.7608 5.1088 2.5994 15 6 1.4692 7.0622 2.3064 16 1 1.7845 8.0277 1.9110 17 7 1.4674 7.1112 3.7746 18 6 0.0597 6.7415 1.8050 19 6 -0.8848 7.8883 2.1707 20 6 -2.2730 7.5727 1.6763 21 1 -2.4627 6.6467 1.1540 22 6 -3.3011 8.4659 1.8918 23 7 -4.5127 8.1903 1.4608 24 14 -2.9731 10.0673 2.7958 25 1 -2.5959 11.1194 1.8181 26 1 -4.1983 10.4845 3.5239 27 1 -1.8645 9.8709 3.7641 28 7 1.8944 3.5574 0.0025 29 6 1.3002 2.3805 -0.0020 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 4.0433 0.4030 0.0005 34 1 5.0932 2.6552 0.0008 35 1 5.1685 5.3375 -1.7026 36 1 3.4728 4.9606 -2.1517 37 1 3.4792 7.3547 -2.4104 38 1 4.6101 7.5862 -1.0353 39 1 1.6556 6.7627 -0.9595 40 1 2.4812 8.0148 0.0164 41 1 1.1784 6.2271 4.1655 42 1 2.3720 7.3845 4.1283 43 1 0.0787 6.6175 0.7224 44 1 -0.2904 5.8200 2.2703 45 1 -0.9037 8.0124 3.2534 46 1 -0.5346 8.8098 1.7054 47 1 -5.2359 8.8187 1.6120 48 1 0.2215 2.3264 -0.0028 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001355487819.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:44 Heat of formation + Delta-G solvation = -36.010696 kcal Electronic energy + Delta-G solvation = -29529.726511 eV Core-core repulsion = 25584.855809 eV Total energy + Delta-G solvation = -3944.870702 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.02174 -39.96587 -38.37240 -37.30456 -35.21798 -32.71361 -32.55696 -31.81303 -31.46390 -30.40400 -28.40153 -27.44324 -26.68515 -24.46196 -23.70259 -22.89462 -22.11690 -21.03792 -20.06462 -19.01011 -18.28562 -17.43907 -17.16819 -16.63345 -16.36952 -16.03739 -15.84922 -15.44113 -14.95801 -14.34731 -14.34004 -14.12450 -14.11200 -13.92534 -13.53807 -13.38996 -13.25483 -12.95744 -12.70582 -12.48028 -12.26764 -12.21556 -12.12118 -11.84191 -11.61568 -11.38685 -11.32857 -11.01464 -10.89071 -10.77445 -10.24566 -9.82957 -9.81594 -9.69925 -9.50499 -9.44372 -9.04522 -8.64544 -8.46383 -8.40792 -8.28307 -5.95131 -3.91836 0.99296 1.18927 2.84613 2.98085 3.11128 3.38783 3.46492 3.55410 3.65819 4.12384 4.37916 4.50457 4.52765 4.55363 4.55606 4.78146 4.81447 4.89431 4.96334 4.99915 5.07413 5.10313 5.22282 5.29663 5.33197 5.39471 5.43201 5.44016 5.52441 5.64484 5.70737 5.72522 5.81745 5.87501 5.90532 6.04346 6.31698 6.36187 6.46101 6.62362 6.98405 7.01324 7.34839 7.44729 7.64201 7.69361 7.73812 7.92232 7.96893 8.39171 8.64048 9.10455 9.68452 11.18525 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010823 B = 0.003633 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2586.413738 B = 7705.708934 C = 9063.945350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.315 6.315 3 C 0.070 3.930 4 C -0.108 4.108 5 C -0.127 4.127 6 C 0.092 3.908 7 C 0.190 3.810 8 H 0.087 0.913 9 C -0.121 4.121 10 C -0.131 4.131 11 C 0.098 3.902 12 N -0.599 5.599 13 C 0.509 3.491 14 O -0.552 6.552 15 C 0.079 3.921 16 H 0.094 0.906 17 N -0.811 5.811 18 C -0.081 4.081 19 C -0.004 4.004 20 C -0.517 4.517 21 H 0.068 0.932 22 C 0.065 3.935 23 N -0.908 5.908 24 Si 0.878 3.122 25 H -0.279 1.279 26 H -0.290 1.290 27 H -0.260 1.260 28 N -0.421 5.421 29 C 0.028 3.972 30 H 0.102 0.898 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.140 0.860 34 H 0.138 0.862 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.348 0.652 42 H 0.333 0.667 43 H 0.061 0.939 44 H 0.056 0.944 45 H 0.032 0.968 46 H 0.007 0.993 47 H 0.261 0.739 48 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.383 -10.505 -7.401 24.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.227 6.227 3 C 0.023 3.977 4 C -0.135 4.135 5 C -0.147 4.147 6 C -0.047 4.047 7 C 0.085 3.915 8 H 0.105 0.895 9 C -0.159 4.159 10 C -0.169 4.169 11 C -0.024 4.024 12 N -0.332 5.332 13 C 0.297 3.703 14 O -0.429 6.429 15 C -0.036 4.036 16 H 0.112 0.888 17 N -0.339 5.339 18 C -0.119 4.119 19 C -0.041 4.041 20 C -0.555 4.555 21 H 0.086 0.914 22 C -0.135 4.135 23 N -0.548 5.548 24 Si 0.705 3.295 25 H -0.205 1.205 26 H -0.217 1.217 27 H -0.184 1.184 28 N -0.130 5.130 29 C -0.130 4.130 30 H 0.121 0.879 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.158 0.842 34 H 0.156 0.844 35 H 0.102 0.898 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.099 0.901 41 H 0.162 0.838 42 H 0.145 0.855 43 H 0.080 0.920 44 H 0.074 0.926 45 H 0.050 0.950 46 H 0.025 0.975 47 H 0.071 0.929 48 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 19.325 -9.782 -6.948 22.746 hybrid contribution 0.911 -0.728 0.312 1.207 sum 20.236 -10.509 -6.636 23.748 Atomic orbital electron populations 1.23146 0.77716 1.04304 1.02039 1.86041 1.21874 1.26119 1.88674 1.20088 0.93249 0.85818 0.98555 1.20806 0.91657 0.98578 1.02439 1.21659 1.01110 0.91726 1.00245 1.21270 0.89600 0.95316 0.98553 1.20337 0.91999 0.84387 0.94803 0.89531 1.22672 1.02386 0.96509 0.94352 1.22790 0.98226 0.95730 1.00184 1.22408 0.98351 0.92309 0.89380 1.48433 1.46353 1.26926 1.11536 1.22183 0.80628 0.87704 0.79802 1.90637 1.60132 1.38099 1.54043 1.21819 0.96293 0.95822 0.89680 0.88774 1.59076 1.33052 1.37709 1.04070 1.21384 0.89759 1.00998 0.99787 1.19491 0.94196 0.92730 0.97719 1.21184 0.91666 1.06099 1.36527 0.91353 1.25003 0.94944 0.98225 0.95320 1.69924 1.00673 1.36760 1.47419 0.86791 0.77961 0.83989 0.80722 1.20522 1.21672 1.18417 1.67298 1.11235 1.26237 1.08229 1.22968 1.00671 0.86964 1.02420 0.87917 0.92094 0.92242 0.84204 0.84399 0.89803 0.90264 0.89492 0.90503 0.90348 0.90072 0.83750 0.85517 0.92005 0.92555 0.94960 0.97494 0.92931 0.82482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.82 101.05 0.99 1.19 16 2 O -0.31 -3.63 10.51 -19.47 -0.20 -3.84 16 3 C 0.07 0.89 6.71 -39.07 -0.26 0.63 16 4 C -0.11 -1.22 10.13 -39.14 -0.40 -1.62 16 5 C -0.13 -1.41 9.76 -39.47 -0.39 -1.80 16 6 C 0.09 1.24 5.03 -82.58 -0.42 0.82 16 7 C 0.19 2.23 3.10 -68.10 -0.21 2.02 16 8 H 0.09 0.96 8.12 -51.93 -0.42 0.54 16 9 C -0.12 -1.01 6.47 -24.89 -0.16 -1.17 16 10 C -0.13 -1.04 7.09 -24.58 -0.17 -1.21 16 11 C 0.10 1.12 6.23 -2.53 -0.02 1.10 16 12 N -0.60 -8.23 2.70 -164.32 -0.44 -8.68 16 13 C 0.51 8.50 6.57 -10.99 -0.07 8.43 16 14 O -0.55 -10.69 16.09 5.55 0.09 -10.60 16 15 C 0.08 1.36 2.57 -68.87 -0.18 1.18 16 16 H 0.09 1.48 6.91 -51.93 -0.36 1.12 16 17 N -0.81 -13.66 8.44 -5.66 -0.05 -13.71 16 18 C -0.08 -1.67 4.77 -26.73 -0.13 -1.80 16 19 C 0.00 -0.09 3.93 -27.88 -0.11 -0.20 16 20 C -0.52 -14.98 9.66 -34.44 -0.33 -15.31 16 21 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 22 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 23 N -0.91 -28.46 13.96 55.43 0.77 -27.68 16 24 Si 0.88 22.21 27.47 -169.99 -4.67 17.54 16 25 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 26 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 27 H -0.26 -6.41 6.54 56.52 0.37 -6.04 16 28 N -0.42 -6.58 9.44 -9.35 -0.09 -6.67 16 29 C 0.03 0.40 10.22 -17.38 -0.18 0.23 16 30 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.53 7.68 -51.93 -0.40 0.13 16 32 H 0.06 0.46 7.68 -51.93 -0.40 0.06 16 33 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 34 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 35 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.73 7.84 -51.93 -0.41 0.32 16 37 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.08 1.00 7.86 -51.93 -0.41 0.59 16 40 H 0.08 0.87 6.92 -51.93 -0.36 0.51 16 41 H 0.35 6.09 8.58 -39.29 -0.34 5.75 16 42 H 0.33 4.84 9.06 -39.29 -0.36 4.48 16 43 H 0.06 1.26 7.40 -51.93 -0.38 0.88 16 44 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 45 H 0.03 0.81 6.81 -51.93 -0.35 0.46 16 46 H 0.01 0.16 7.57 -51.93 -0.39 -0.23 16 47 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 48 H 0.16 2.03 6.32 -52.49 -0.33 1.70 16 LS Contribution 388.76 15.07 5.86 5.86 Total: -1.00 -36.34 388.76 -8.31 -44.65 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: -7.45 Total: 8.79 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: -2.12 Total: -5.67 kcal Atomic # 7 Polarization: -56.93 SS G_CDS: 0.19 Total: -56.74 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: -0.12 Total: -14.44 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.67 Total: 17.54 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.34 -8.31 -44.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355487819.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.642 kcal (2) G-P(sol) polarization free energy of solvation -36.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds