Wall clock time and date at job start Tue Mar 31 2020 17:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34777 * 120.00068 * 2 1 4 4 O 1.21589 * 120.00049 * 0.02562 * 3 2 1 5 5 N 1.34777 * 120.00025 * 180.02562 * 3 2 1 6 6 C 1.46506 * 119.99760 * 180.02562 * 5 3 2 7 7 H 1.08996 * 109.50382 * 35.07965 * 6 5 3 8 8 C 1.53117 * 109.50203 * 274.99828 * 6 5 3 9 9 C 1.53116 * 109.16339 * 182.40793 * 8 6 5 10 10 C 1.53044 * 109.27846 * 57.65136 * 9 8 6 11 11 N 1.46847 * 109.52219 * 300.82640 * 10 9 8 12 12 C 1.46902 * 110.99589 * 185.84200 * 11 10 9 13 13 C 1.50696 * 109.47653 * 66.04283 * 12 11 10 14 14 C 1.38300 * 119.92953 * 269.72940 * 13 12 11 15 15 C 1.38100 * 120.06481 * 179.72311 * 14 13 12 16 16 C 1.38879 * 119.93523 * 0.54683 * 15 14 13 17 17 O 1.35750 * 120.07634 * 179.74671 * 16 15 14 18 18 C 1.34827 * 117.00361 * 174.44218 * 17 16 15 19 19 H 1.08002 * 119.99776 * 5.05667 * 18 17 16 20 20 C 1.38644 * 119.99995 * 185.05608 * 18 17 16 21 21 N 1.31558 * 120.00307 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99941 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46760 * 90.00508 * 22 20 18 24 24 H 1.48497 * 109.47020 * 209.99898 * 22 20 18 25 25 H 1.48496 * 109.47118 * 330.00051 * 22 20 18 26 26 C 1.38885 * 119.85554 * 359.72716 * 16 15 14 27 27 C 1.38100 * 119.93438 * 359.97438 * 26 16 15 28 28 C 1.46839 * 111.20232 * 61.74098 * 11 10 9 29 29 H 1.08992 * 109.47114 * 59.99429 * 1 2 3 30 30 H 1.08997 * 109.46713 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46783 * 299.99216 * 1 2 3 32 32 H 0.97003 * 120.00308 * 180.02562 * 2 1 3 33 33 H 0.96994 * 120.00265 * 0.02562 * 5 3 2 34 34 H 1.09000 * 109.52613 * 62.49930 * 8 6 5 35 35 H 1.08999 * 109.57766 * 302.34318 * 8 6 5 36 36 H 1.09010 * 109.49873 * 297.71677 * 9 8 6 37 37 H 1.08993 * 109.50998 * 177.59856 * 9 8 6 38 38 H 1.09003 * 109.46082 * 180.80489 * 10 9 8 39 39 H 1.09000 * 109.44901 * 60.83404 * 10 9 8 40 40 H 1.09004 * 109.47197 * 186.04964 * 12 11 10 41 41 H 1.09006 * 109.46647 * 306.04123 * 12 11 10 42 42 H 1.07999 * 119.96721 * 359.97438 * 14 13 12 43 43 H 1.08003 * 120.03649 * 180.27282 * 15 14 13 44 44 H 0.97000 * 120.00311 * 179.97438 * 21 20 18 45 45 H 1.08005 * 120.02888 * 179.97438 * 26 16 15 46 46 H 1.07996 * 119.96541 * 179.97438 * 27 26 16 47 47 H 1.09001 * 109.46342 * 58.26979 * 28 11 10 48 48 H 1.08996 * 109.46774 * 178.23815 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5310 2.2202 0.0005 5 7 3.4867 1.1672 -0.0005 6 6 4.2191 2.4360 0.0000 7 1 3.6732 3.1711 0.5912 8 6 4.3653 2.9425 -1.4375 9 6 5.1832 4.2369 -1.4337 10 6 6.5451 3.9720 -0.7875 11 7 6.3512 3.4902 0.5860 12 6 7.6372 3.3572 1.2836 13 6 8.2534 4.7203 1.4655 14 6 9.1000 5.2295 0.4976 15 6 9.6618 6.4808 0.6587 16 6 9.3849 7.2232 1.7993 17 8 9.9396 8.4513 1.9630 18 6 9.5401 9.1656 3.0344 19 1 8.8727 8.7239 3.7595 20 6 9.9860 10.4672 3.2052 21 7 10.7986 11.0055 2.3216 22 14 9.4319 11.4572 4.6893 23 1 10.3854 11.2474 5.8082 24 1 9.3930 12.8990 4.3360 25 1 8.0770 11.0122 5.1033 26 6 8.5388 6.7066 2.7720 27 6 7.9752 5.4573 2.6022 28 6 5.6089 2.2233 0.6046 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8901 32 1 1.9501 -0.8400 -0.0004 33 1 3.9717 0.3272 -0.0013 34 1 3.3783 3.1366 -1.8575 35 1 4.8758 2.1908 -2.0395 36 1 4.6530 5.0007 -0.8648 37 1 5.3270 4.5796 -2.4582 38 1 7.1246 4.8951 -0.7703 39 1 7.0802 3.2180 -1.3648 40 1 7.4756 2.8984 2.2591 41 1 8.3072 2.7312 0.6942 42 1 9.3188 4.6498 -0.3869 43 1 10.3194 6.8798 -0.0994 44 1 11.1103 11.9163 2.4410 45 1 8.3218 7.2813 3.6603 46 1 7.3175 5.0549 3.3584 47 1 6.1486 1.4776 0.0208 48 1 5.5085 1.8762 1.6329 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364509445.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:35 Heat of formation + Delta-G solvation = -53.374858 kcal Electronic energy + Delta-G solvation = -28033.604833 eV Core-core repulsion = 24087.981164 eV Total energy + Delta-G solvation = -3945.623669 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.29271 -40.80715 -39.78095 -38.21500 -35.93466 -35.51198 -34.35101 -33.76929 -31.78738 -31.34594 -30.33044 -27.69525 -27.22323 -26.49291 -23.96835 -23.93202 -23.37723 -22.04545 -21.60623 -20.92269 -19.82186 -19.48347 -18.80900 -17.69062 -16.69789 -16.51607 -16.46849 -16.41602 -16.14133 -15.66448 -15.52855 -15.46031 -15.38375 -14.99320 -14.88748 -14.64872 -14.47854 -14.30611 -13.99569 -13.82446 -13.58807 -13.45123 -13.01378 -12.95344 -12.69560 -12.46412 -12.32826 -12.29810 -12.13925 -12.11524 -11.78550 -11.73055 -11.51744 -11.27503 -11.14256 -10.78123 -10.36051 -9.76998 -9.72200 -9.21286 -8.84823 -8.46311 -6.14028 0.63720 0.70873 1.34710 1.43720 1.52160 1.72129 2.16360 2.18175 2.76287 3.03645 3.29609 3.47742 3.55267 3.78243 3.89287 4.02019 4.06341 4.11459 4.22578 4.31959 4.37944 4.47527 4.49558 4.61073 4.63279 4.64308 4.67532 4.72863 4.79116 4.85562 4.93994 4.98601 5.03273 5.09332 5.12354 5.17634 5.26502 5.33320 5.37691 5.51257 5.53498 5.60577 5.75161 5.84816 6.03715 6.04768 6.16068 6.22860 6.30286 6.98744 7.14717 7.62343 7.80363 8.76925 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019613 B = 0.002060 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.304553 B =13587.809199 C =14206.333357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.738 5.738 3 C 0.694 3.306 4 O -0.641 6.641 5 N -0.725 5.725 6 C 0.171 3.829 7 H 0.060 0.940 8 C -0.119 4.119 9 C -0.113 4.113 10 C 0.053 3.947 11 N -0.547 5.547 12 C 0.120 3.880 13 C -0.151 4.151 14 C -0.057 4.057 15 C -0.205 4.205 16 C 0.113 3.887 17 O -0.234 6.234 18 C -0.412 4.412 19 H 0.100 0.900 20 C -0.024 4.024 21 N -0.921 5.921 22 Si 1.017 2.983 23 H -0.262 1.262 24 H -0.271 1.271 25 H -0.255 1.255 26 C -0.246 4.246 27 C -0.051 4.051 28 C 0.060 3.940 29 H 0.043 0.957 30 H 0.114 0.886 31 H 0.043 0.957 32 H 0.416 0.584 33 H 0.413 0.587 34 H 0.047 0.953 35 H 0.079 0.921 36 H 0.049 0.951 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.051 0.949 40 H 0.092 0.908 41 H 0.058 0.942 42 H 0.146 0.854 43 H 0.111 0.889 44 H 0.272 0.728 45 H 0.114 0.886 46 H 0.135 0.865 47 H 0.061 0.939 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.799 -28.497 -5.401 32.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.394 5.394 3 C 0.394 3.606 4 O -0.522 6.522 5 N -0.381 5.381 6 C 0.065 3.935 7 H 0.079 0.921 8 C -0.158 4.158 9 C -0.151 4.151 10 C -0.074 4.074 11 N -0.273 5.273 12 C -0.007 4.007 13 C -0.153 4.153 14 C -0.075 4.075 15 C -0.224 4.224 16 C 0.062 3.938 17 O -0.141 6.141 18 C -0.488 4.488 19 H 0.117 0.883 20 C -0.221 4.221 21 N -0.559 5.559 22 Si 0.837 3.163 23 H -0.187 1.187 24 H -0.196 1.196 25 H -0.179 1.179 26 C -0.265 4.265 27 C -0.070 4.070 28 C -0.068 4.068 29 H 0.062 0.938 30 H 0.132 0.868 31 H 0.061 0.939 32 H 0.252 0.748 33 H 0.250 0.750 34 H 0.066 0.934 35 H 0.097 0.903 36 H 0.068 0.932 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.069 0.931 40 H 0.111 0.889 41 H 0.076 0.924 42 H 0.163 0.837 43 H 0.130 0.870 44 H 0.081 0.919 45 H 0.132 0.868 46 H 0.153 0.847 47 H 0.079 0.921 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -15.387 -26.930 -5.315 31.467 hybrid contribution 0.798 0.051 0.142 0.812 sum -14.589 -26.879 -5.173 31.017 Atomic orbital electron populations 1.21506 0.77602 1.04012 1.00969 1.44822 1.08156 1.06830 1.79596 1.16259 0.82345 0.84452 0.77565 1.90927 1.68970 1.32531 1.59772 1.44864 1.03893 1.09917 1.79418 1.20591 0.91900 0.84726 0.96255 0.92148 1.21880 0.99700 0.97636 0.96625 1.21510 0.95449 0.97326 1.00838 1.22164 0.96956 1.00492 0.87833 1.61699 1.19863 1.29020 1.16689 1.20790 0.88364 0.91867 0.99659 1.19577 1.01671 0.98431 0.95574 1.20871 0.95007 0.93025 0.98621 1.20435 1.07547 0.97217 0.97223 1.19955 0.92614 0.86300 0.94886 1.83933 1.59613 1.24610 1.45932 1.21786 1.30414 0.95846 1.00725 0.88308 1.26564 0.96332 0.96839 1.02368 1.70182 1.33040 1.15602 1.37086 0.84606 0.79218 0.76856 0.75659 1.18660 1.19576 1.17901 1.21248 1.04829 0.99311 1.01100 1.20900 0.96361 0.92097 0.97604 1.22182 0.92097 0.90583 1.01933 0.93776 0.86767 0.93864 0.74787 0.75010 0.93400 0.90288 0.93233 0.90264 0.91421 0.93074 0.88925 0.92428 0.83651 0.87050 0.91893 0.86813 0.84743 0.92066 0.89306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.03 10.70 127.77 1.37 2.40 16 2 N -0.74 -8.06 5.72 -500.20 -2.86 -10.92 16 3 C 0.69 13.63 8.53 179.05 1.53 15.16 16 4 O -0.64 -19.90 16.01 -4.00 -0.06 -19.97 16 5 N -0.73 -10.00 5.09 -457.55 -2.33 -12.32 16 6 C 0.17 3.17 2.62 45.04 0.12 3.29 16 7 H 0.06 1.62 7.58 -2.39 -0.02 1.60 16 8 C -0.12 -2.24 5.58 30.67 0.17 -2.07 16 9 C -0.11 -2.38 6.09 30.65 0.19 -2.19 16 10 C 0.05 1.11 5.17 86.33 0.45 1.56 16 11 N -0.55 -11.41 4.65 -900.91 -4.19 -15.59 16 12 C 0.12 2.47 5.12 85.56 0.44 2.91 16 13 C -0.15 -4.53 4.89 -19.84 -0.10 -4.63 16 14 C -0.06 -1.83 7.88 22.25 0.18 -1.65 16 15 C -0.20 -8.70 9.99 22.39 0.22 -8.47 16 16 C 0.11 5.70 6.65 22.58 0.15 5.85 16 17 O -0.23 -14.37 9.76 -22.71 -0.22 -14.60 16 18 C -0.41 -24.51 9.49 67.92 0.64 -23.87 16 19 H 0.10 5.45 5.20 -2.91 -0.02 5.43 16 20 C -0.02 -1.38 5.49 84.83 0.47 -0.91 16 21 N -0.92 -57.42 13.67 21.61 0.30 -57.12 16 22 Si 1.02 43.94 29.55 68.60 2.03 45.96 16 23 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 24 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 25 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 26 C -0.25 -10.95 9.17 22.39 0.21 -10.74 16 27 C -0.05 -1.78 9.69 22.25 0.22 -1.57 16 28 C 0.06 0.90 4.93 86.33 0.43 1.32 16 29 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 31 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.42 1.24 8.84 -92.71 -0.82 0.42 16 33 H 0.41 2.41 8.62 -92.71 -0.80 1.61 16 34 H 0.05 1.10 8.14 -2.39 -0.02 1.09 16 35 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 37 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.07 1.73 5.77 -2.39 -0.01 1.72 16 39 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.09 1.66 7.93 -2.38 -0.02 1.64 16 41 H 0.06 0.98 8.06 -2.38 -0.02 0.96 16 42 H 0.15 3.58 7.97 -2.91 -0.02 3.56 16 43 H 0.11 4.70 8.06 -2.91 -0.02 4.67 16 44 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 45 H 0.11 5.23 5.64 -2.91 -0.02 5.21 16 46 H 0.13 3.94 8.06 -2.91 -0.02 3.92 16 47 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 48 H 0.09 1.19 8.01 -2.39 -0.02 1.17 16 Total: -1.00 -82.62 389.07 -1.31 -83.92 By element: Atomic # 1 Polarization: 24.90 SS G_CDS: -0.63 Total: 24.26 kcal Atomic # 6 Polarization: -30.29 SS G_CDS: 6.66 Total: -23.62 kcal Atomic # 7 Polarization: -86.89 SS G_CDS: -9.08 Total: -95.96 kcal Atomic # 8 Polarization: -34.28 SS G_CDS: -0.29 Total: -34.56 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.96 kcal Total: -82.62 -1.31 -83.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364509445.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.549 kcal (2) G-P(sol) polarization free energy of solvation -82.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds