Wall clock time and date at job start Tue Mar 31 2020 17:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 114.00045 * 2 1 4 4 C 1.53000 * 109.47239 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47460 * 63.38333 * 4 3 2 6 6 C 1.46501 * 119.99716 * 84.55907 * 5 4 3 7 7 C 1.50702 * 109.47074 * 90.00102 * 6 5 4 8 8 H 1.07996 * 119.99675 * 0.02562 * 7 6 5 9 9 C 1.37868 * 120.00040 * 179.97438 * 7 6 5 10 10 N 1.31522 * 120.00016 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00269 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.46981 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.47472 * 120.00030 * 11 9 7 14 14 H 1.48497 * 109.47157 * 240.00489 * 11 9 7 15 15 C 1.34779 * 120.00108 * 264.56259 * 5 4 3 16 16 O 1.21280 * 119.99817 * 5.84509 * 15 5 4 17 17 C 1.50693 * 119.99845 * 185.84669 * 15 5 4 18 18 H 1.09004 * 110.62965 * 326.50468 * 17 15 5 19 19 C 1.55140 * 110.70686 * 89.80401 * 17 15 5 20 20 C 1.54900 * 101.65608 * 154.03726 * 19 17 15 21 21 N 1.47850 * 104.79566 * 322.92945 * 20 19 17 22 22 C 1.39160 * 111.00032 * 146.36439 * 21 20 19 23 23 C 1.39477 * 120.86497 * 203.51406 * 22 21 20 24 24 C 1.37900 * 119.06622 * 179.72996 * 23 22 21 25 25 N 1.31994 * 120.84467 * 0.55658 * 24 23 22 26 26 C 1.31994 * 121.90677 * 359.71145 * 25 24 23 27 27 C 1.37891 * 120.84438 * 0.02562 * 26 25 24 28 28 C 1.47438 * 108.56560 * 24.09568 * 21 20 19 29 29 H 1.09005 * 109.47033 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47099 * 300.00411 * 1 2 3 31 31 H 1.09002 * 109.46786 * 60.00084 * 1 2 3 32 32 H 1.09004 * 109.46694 * 299.99328 * 3 2 1 33 33 H 1.08992 * 109.47124 * 59.99729 * 3 2 1 34 34 H 1.08991 * 109.47593 * 183.38913 * 4 3 2 35 35 H 1.09004 * 109.46818 * 303.39090 * 4 3 2 36 36 H 1.09002 * 109.47148 * 210.00174 * 6 5 4 37 37 H 1.08996 * 109.46893 * 330.00436 * 6 5 4 38 38 H 0.96996 * 119.99693 * 179.97438 * 10 9 7 39 39 H 1.09011 * 110.98974 * 272.12818 * 19 17 15 40 40 H 1.08997 * 110.98972 * 35.94227 * 19 17 15 41 41 H 1.08997 * 110.37598 * 204.10027 * 20 19 17 42 42 H 1.09002 * 110.47329 * 81.80545 * 20 19 17 43 43 H 1.08000 * 120.46620 * 359.96959 * 23 22 21 44 44 H 1.08002 * 119.57602 * 180.24531 * 24 23 22 45 45 H 1.08005 * 119.57408 * 179.97438 * 26 25 24 46 46 H 1.08006 * 120.46699 * 180.02562 * 27 26 25 47 47 H 1.09004 * 109.88937 * 239.60425 * 28 21 20 48 48 H 1.08997 * 110.02701 * 118.49039 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9730 0.5295 -1.2358 6 6 4.1662 1.3187 -2.4548 7 6 5.5881 1.8146 -2.5121 8 1 6.2788 1.5664 -1.7199 9 6 6.0074 2.5844 -3.5763 10 7 5.1662 2.8863 -4.5412 11 14 7.7700 3.1985 -3.6477 12 1 8.5085 2.7239 -2.4500 13 1 8.4270 2.6763 -4.8728 14 1 7.7761 4.6832 -3.6773 15 6 4.1977 -0.7994 -1.2506 16 8 3.9370 -1.4694 -0.2739 17 6 4.7730 -1.4526 -2.4808 18 1 4.4231 -0.9492 -3.3821 19 6 6.3232 -1.4649 -2.4214 20 6 6.6609 -2.6848 -3.3141 21 7 5.6003 -3.6723 -3.0210 22 6 5.2887 -4.4201 -4.1525 23 6 4.0469 -5.0425 -4.2793 24 6 3.7753 -5.7699 -5.4189 25 7 4.6763 -5.8897 -6.3760 26 6 5.8643 -5.3207 -6.2911 27 6 6.2122 -4.5720 -5.1866 28 6 4.4147 -2.9531 -2.5200 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6887 1.8463 -0.8901 33 1 1.6886 1.8464 0.8899 34 1 3.9787 2.1785 0.0601 35 1 3.8533 0.5920 0.8572 36 1 3.9629 0.6966 -3.3265 37 1 3.4847 2.1693 -2.4486 38 1 5.4611 3.4282 -5.2897 39 1 6.7373 -0.5477 -2.8405 40 1 6.6736 -1.6189 -1.4008 41 1 7.6385 -3.0886 -3.0509 42 1 6.6379 -2.4046 -4.3672 43 1 3.3070 -4.9526 -3.4976 44 1 2.8149 -6.2519 -5.5274 45 1 6.5731 -5.4438 -7.0966 46 1 7.1858 -4.1088 -5.1237 47 1 4.1660 -3.3013 -1.5175 48 1 3.5695 -3.1151 -3.1889 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001472518477.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:30 Heat of formation + Delta-G solvation = -28.372282 kcal Electronic energy + Delta-G solvation = -29731.522048 eV Core-core repulsion = 25786.982572 eV Total energy + Delta-G solvation = -3944.539475 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.79986 -39.42455 -38.01847 -37.20196 -35.00723 -33.19888 -32.66453 -31.45681 -30.21514 -28.98647 -28.83323 -27.10806 -26.06784 -24.01657 -23.48561 -23.13202 -22.42032 -20.87712 -20.73058 -18.20902 -17.73598 -16.97096 -16.61231 -16.25750 -15.95479 -15.77549 -15.46831 -15.23142 -14.84389 -14.68207 -14.51731 -14.35218 -13.90056 -13.63416 -13.60522 -13.25191 -12.85473 -12.60587 -12.48626 -12.45146 -12.11395 -11.78322 -11.62997 -11.45682 -11.38326 -11.18237 -11.03888 -10.94074 -10.86878 -10.66113 -10.40759 -10.23165 -10.06604 -9.80861 -9.43967 -9.38304 -9.11047 -8.98939 -8.62590 -8.11774 -7.74001 -6.27291 -4.34959 1.21465 1.37822 3.13540 3.23695 3.25852 3.38265 3.66031 3.85700 4.04595 4.13250 4.24806 4.53003 4.66471 4.74107 5.03118 5.06228 5.08689 5.21881 5.29651 5.34904 5.40131 5.43280 5.49273 5.56749 5.59677 5.63165 5.65549 5.72290 5.77894 5.78386 5.82037 5.91997 5.96072 5.99999 6.07156 6.19029 6.33702 6.46347 6.52699 6.63824 6.72002 6.89812 7.11725 7.17101 7.40341 7.54663 7.67985 7.96712 8.09029 8.31793 8.71967 9.03362 9.33416 10.79120 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.008217 B = 0.004597 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3406.763660 B = 6089.257581 C = 8493.779477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.370 6.370 3 C 0.045 3.955 4 C 0.122 3.878 5 N -0.591 5.591 6 C 0.237 3.763 7 C -0.535 4.535 8 H 0.063 0.937 9 C 0.066 3.934 10 N -0.890 5.890 11 Si 0.891 3.109 12 H -0.271 1.271 13 H -0.282 1.282 14 H -0.283 1.283 15 C 0.533 3.467 16 O -0.556 6.556 17 C -0.121 4.121 18 H 0.106 0.894 19 C -0.108 4.108 20 C 0.039 3.961 21 N -0.472 5.472 22 C 0.163 3.837 23 C -0.215 4.215 24 C 0.121 3.879 25 N -0.517 5.517 26 C 0.121 3.879 27 C -0.221 4.221 28 C 0.051 3.949 29 H 0.080 0.920 30 H 0.034 0.966 31 H 0.036 0.964 32 H 0.050 0.950 33 H 0.049 0.951 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.037 0.963 37 H 0.033 0.967 38 H 0.265 0.735 39 H 0.107 0.893 40 H 0.075 0.925 41 H 0.087 0.913 42 H 0.068 0.932 43 H 0.136 0.864 44 H 0.153 0.847 45 H 0.152 0.848 46 H 0.136 0.864 47 H 0.105 0.895 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.822 -8.109 1.745 8.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.289 6.289 3 C -0.033 4.033 4 C -0.002 4.002 5 N -0.321 5.321 6 C 0.118 3.882 7 C -0.574 4.574 8 H 0.082 0.918 9 C -0.137 4.137 10 N -0.528 5.528 11 Si 0.719 3.281 12 H -0.195 1.195 13 H -0.208 1.208 14 H -0.209 1.209 15 C 0.320 3.680 16 O -0.435 6.435 17 C -0.143 4.143 18 H 0.124 0.876 19 C -0.147 4.147 20 C -0.087 4.087 21 N -0.184 5.184 22 C 0.054 3.946 23 C -0.239 4.239 24 C -0.036 4.036 25 N -0.228 5.228 26 C -0.035 4.035 27 C -0.245 4.245 28 C -0.075 4.075 29 H 0.098 0.902 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.109 0.891 35 H 0.099 0.901 36 H 0.054 0.946 37 H 0.051 0.949 38 H 0.075 0.925 39 H 0.125 0.875 40 H 0.094 0.906 41 H 0.105 0.895 42 H 0.086 0.914 43 H 0.154 0.846 44 H 0.170 0.830 45 H 0.170 0.830 46 H 0.154 0.846 47 H 0.123 0.877 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.876 -9.266 1.805 9.868 hybrid contribution 0.691 1.850 0.035 1.975 sum -2.185 -7.416 1.840 7.947 Atomic orbital electron populations 1.22673 0.82468 1.02119 0.99250 1.88097 1.18265 1.27333 1.95182 1.23035 0.95436 0.85025 0.99771 1.21315 0.91122 0.98922 0.88798 1.48026 1.64731 1.07180 1.12207 1.19430 0.97042 0.90942 0.80827 1.21518 0.96109 1.32693 1.07040 0.91845 1.24936 0.97698 0.95727 0.95356 1.69929 1.34905 1.37667 1.10313 0.86539 0.84548 0.78822 0.78213 1.19531 1.20788 1.20858 1.19865 0.77360 0.82290 0.88487 1.90600 1.53196 1.63098 1.36632 1.22386 0.97613 0.95021 0.99234 0.87649 1.22676 0.92949 0.98521 1.00528 1.23362 0.94616 0.90744 0.99929 1.60234 1.09908 1.23248 1.25007 1.19549 0.93001 0.94292 0.87803 1.21913 0.97044 1.03641 1.01257 1.22527 0.98007 0.94204 0.88826 1.67699 1.02785 1.22156 1.30184 1.22523 0.93225 0.91655 0.96124 1.21989 1.01696 1.05700 0.95074 1.23107 0.89929 0.91482 1.02939 0.90191 0.94761 0.94585 0.93159 0.93329 0.89080 0.90079 0.94564 0.94874 0.92528 0.87465 0.90626 0.89460 0.91417 0.84579 0.82990 0.83029 0.84597 0.87702 0.91268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.53 16 2 O -0.37 -6.44 9.84 -36.04 -0.35 -6.79 16 3 C 0.05 0.71 6.29 37.16 0.23 0.95 16 4 C 0.12 2.15 5.84 -4.04 -0.02 2.13 16 5 N -0.59 -11.81 2.40 -175.06 -0.42 -12.23 16 6 C 0.24 5.26 4.94 -5.19 -0.03 5.24 16 7 C -0.53 -12.69 8.24 -34.44 -0.28 -12.97 16 8 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 9 C 0.07 1.63 5.46 -17.82 -0.10 1.53 16 10 N -0.89 -23.27 13.29 55.43 0.74 -22.53 16 11 Si 0.89 19.28 29.54 -169.99 -5.02 14.26 16 12 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 13 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 14 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 15 C 0.53 10.67 6.59 -10.99 -0.07 10.60 16 16 O -0.56 -12.17 14.60 4.75 0.07 -12.10 16 17 C -0.12 -2.14 2.71 -89.95 -0.24 -2.38 16 18 H 0.11 1.99 6.02 -51.93 -0.31 1.68 16 19 C -0.11 -1.79 6.45 -24.60 -0.16 -1.95 16 20 C 0.04 0.55 5.51 -2.30 -0.01 0.54 16 21 N -0.47 -7.05 5.26 -167.72 -0.88 -7.93 16 22 C 0.16 2.31 5.79 -83.61 -0.48 1.82 16 23 C -0.22 -2.84 8.67 -39.24 -0.34 -3.18 16 24 C 0.12 1.52 11.17 -17.61 -0.20 1.32 16 25 N -0.52 -7.13 10.36 -13.35 -0.14 -7.27 16 26 C 0.12 1.51 11.17 -17.61 -0.20 1.32 16 27 C -0.22 -2.85 8.73 -39.25 -0.34 -3.19 16 28 C 0.05 0.81 5.77 -2.84 -0.02 0.79 16 29 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.09 1.51 8.11 -51.93 -0.42 1.09 16 35 H 0.08 1.47 7.35 -51.93 -0.38 1.09 16 36 H 0.04 0.85 5.97 -51.93 -0.31 0.54 16 37 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 38 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 39 H 0.11 1.92 7.03 -51.92 -0.36 1.56 16 40 H 0.08 1.28 8.04 -51.93 -0.42 0.86 16 41 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 42 H 0.07 0.94 6.58 -51.93 -0.34 0.60 16 43 H 0.14 1.65 6.83 -52.49 -0.36 1.29 16 44 H 0.15 1.47 8.06 -52.49 -0.42 1.05 16 45 H 0.15 1.46 8.06 -52.48 -0.42 1.03 16 46 H 0.14 1.52 6.58 -52.48 -0.35 1.18 16 47 H 0.10 1.83 6.76 -51.93 -0.35 1.48 16 48 H 0.07 1.04 5.94 -51.93 -0.31 0.73 16 LS Contribution 385.30 15.07 5.81 5.81 Total: -1.00 -29.28 385.30 -8.61 -37.89 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -7.26 Total: 6.83 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: -1.15 Total: 4.08 kcal Atomic # 7 Polarization: -49.26 SS G_CDS: -0.71 Total: -49.97 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: -0.29 Total: -18.90 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.02 Total: 14.26 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -29.28 -8.61 -37.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001472518477.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.515 kcal (2) G-P(sol) polarization free energy of solvation -29.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds