Wall clock time and date at job start Tue Mar 31 2020 17:54:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42899 * 1
3 3 C 1.42901 * 114.00045 * 2 1
4 4 C 1.53000 * 109.47239 * 180.02562 * 3 2 1
5 5 N 1.46504 * 109.47460 * 63.38333 * 4 3 2
6 6 C 1.46501 * 119.99716 * 84.55907 * 5 4 3
7 7 C 1.50702 * 109.47074 * 90.00102 * 6 5 4
8 8 H 1.07996 * 119.99675 * 0.02562 * 7 6 5
9 9 C 1.37868 * 120.00040 * 179.97438 * 7 6 5
10 10 N 1.31522 * 120.00016 * 0.02562 * 9 7 6
11 11 Si 1.86797 * 120.00269 * 180.02562 * 9 7 6
12 12 H 1.48497 * 109.46981 * 0.02562 * 11 9 7
13 13 H 1.48501 * 109.47472 * 120.00030 * 11 9 7
14 14 H 1.48497 * 109.47157 * 240.00489 * 11 9 7
15 15 C 1.34779 * 120.00108 * 264.56259 * 5 4 3
16 16 O 1.21280 * 119.99817 * 5.84509 * 15 5 4
17 17 C 1.50693 * 119.99845 * 185.84669 * 15 5 4
18 18 H 1.09004 * 110.62965 * 326.50468 * 17 15 5
19 19 C 1.55140 * 110.70686 * 89.80401 * 17 15 5
20 20 C 1.54900 * 101.65608 * 154.03726 * 19 17 15
21 21 N 1.47850 * 104.79566 * 322.92945 * 20 19 17
22 22 C 1.39160 * 111.00032 * 146.36439 * 21 20 19
23 23 C 1.39477 * 120.86497 * 203.51406 * 22 21 20
24 24 C 1.37900 * 119.06622 * 179.72996 * 23 22 21
25 25 N 1.31994 * 120.84467 * 0.55658 * 24 23 22
26 26 C 1.31994 * 121.90677 * 359.71145 * 25 24 23
27 27 C 1.37891 * 120.84438 * 0.02562 * 26 25 24
28 28 C 1.47438 * 108.56560 * 24.09568 * 21 20 19
29 29 H 1.09005 * 109.47033 * 180.02562 * 1 2 3
30 30 H 1.09002 * 109.47099 * 300.00411 * 1 2 3
31 31 H 1.09002 * 109.46786 * 60.00084 * 1 2 3
32 32 H 1.09004 * 109.46694 * 299.99328 * 3 2 1
33 33 H 1.08992 * 109.47124 * 59.99729 * 3 2 1
34 34 H 1.08991 * 109.47593 * 183.38913 * 4 3 2
35 35 H 1.09004 * 109.46818 * 303.39090 * 4 3 2
36 36 H 1.09002 * 109.47148 * 210.00174 * 6 5 4
37 37 H 1.08996 * 109.46893 * 330.00436 * 6 5 4
38 38 H 0.96996 * 119.99693 * 179.97438 * 10 9 7
39 39 H 1.09011 * 110.98974 * 272.12818 * 19 17 15
40 40 H 1.08997 * 110.98972 * 35.94227 * 19 17 15
41 41 H 1.08997 * 110.37598 * 204.10027 * 20 19 17
42 42 H 1.09002 * 110.47329 * 81.80545 * 20 19 17
43 43 H 1.08000 * 120.46620 * 359.96959 * 23 22 21
44 44 H 1.08002 * 119.57602 * 180.24531 * 24 23 22
45 45 H 1.08005 * 119.57408 * 179.97438 * 26 25 24
46 46 H 1.08006 * 120.46699 * 180.02562 * 27 26 25
47 47 H 1.09004 * 109.88937 * 239.60425 * 28 21 20
48 48 H 1.08997 * 110.02701 * 118.49039 * 28 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 6 3.5355 1.1847 -0.0006
5 7 3.9730 0.5295 -1.2358
6 6 4.1662 1.3187 -2.4548
7 6 5.5881 1.8146 -2.5121
8 1 6.2788 1.5664 -1.7199
9 6 6.0074 2.5844 -3.5763
10 7 5.1662 2.8863 -4.5412
11 14 7.7700 3.1985 -3.6477
12 1 8.5085 2.7239 -2.4500
13 1 8.4270 2.6763 -4.8728
14 1 7.7761 4.6832 -3.6773
15 6 4.1977 -0.7994 -1.2506
16 8 3.9370 -1.4694 -0.2739
17 6 4.7730 -1.4526 -2.4808
18 1 4.4231 -0.9492 -3.3821
19 6 6.3232 -1.4649 -2.4214
20 6 6.6609 -2.6848 -3.3141
21 7 5.6003 -3.6723 -3.0210
22 6 5.2887 -4.4201 -4.1525
23 6 4.0469 -5.0425 -4.2793
24 6 3.7753 -5.7699 -5.4189
25 7 4.6763 -5.8897 -6.3760
26 6 5.8643 -5.3207 -6.2911
27 6 6.2122 -4.5720 -5.1866
28 6 4.4147 -2.9531 -2.5200
29 1 -0.3633 -1.0277 0.0005
30 1 -0.3633 0.5139 0.8900
31 1 -0.3633 0.5138 -0.8900
32 1 1.6887 1.8463 -0.8901
33 1 1.6886 1.8464 0.8899
34 1 3.9787 2.1785 0.0601
35 1 3.8533 0.5920 0.8572
36 1 3.9629 0.6966 -3.3265
37 1 3.4847 2.1693 -2.4486
38 1 5.4611 3.4282 -5.2897
39 1 6.7373 -0.5477 -2.8405
40 1 6.6736 -1.6189 -1.4008
41 1 7.6385 -3.0886 -3.0509
42 1 6.6379 -2.4046 -4.3672
43 1 3.3070 -4.9526 -3.4976
44 1 2.8149 -6.2519 -5.5274
45 1 6.5731 -5.4438 -7.0966
46 1 7.1858 -4.1088 -5.1237
47 1 4.1660 -3.3013 -1.5175
48 1 3.5695 -3.1151 -3.1889
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001472518477.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 17:54:29
Heat of formation + Delta-G solvation = -46.214579 kcal
Electronic energy + Delta-G solvation = -29732.295748 eV
Core-core repulsion = 25786.982572 eV
Total energy + Delta-G solvation = -3945.313176 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 333.184 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-41.96933 -40.81136 -39.23517 -38.49205 -36.67714 -34.61537 -34.30579 -32.46394
-31.56275 -30.19258 -30.09982 -28.85642 -27.20569 -25.26306 -24.97620 -24.50546
-23.66706 -22.10553 -21.96194 -19.76605 -18.84689 -18.54928 -18.36362 -17.58866
-17.16113 -17.02006 -16.60475 -16.44313 -16.41543 -15.95986 -15.77353 -15.70811
-15.04198 -14.99302 -14.68920 -14.46957 -14.27873 -14.13975 -13.87994 -13.71481
-13.48441 -13.29056 -13.02273 -12.99788 -12.74816 -12.61539 -12.56363 -12.26907
-12.18977 -12.05954 -11.92733 -11.75039 -11.62500 -11.26105 -10.73169 -10.56985
-10.45802 -10.42049 -10.07697 -9.41383 -9.23839 -8.17353 -6.30730 0.24759
0.33287 1.41802 1.47218 1.55917 1.79923 2.26743 2.45012 2.61068
2.95568 3.01537 3.13638 3.45147 3.48133 3.64984 3.80534 3.94763
4.08311 4.11803 4.17337 4.18388 4.24301 4.26711 4.36603 4.42133
4.48071 4.52749 4.53570 4.60495 4.65725 4.76416 4.81389 4.83016
4.88097 4.89240 4.91959 4.94919 4.97613 5.09876 5.15937 5.27708
5.64746 5.69497 5.75550 5.86608 6.08239 6.08354 6.32427 6.61898
6.85837 7.11380 7.35470 7.47548 8.88407
Molecular weight = 333.18amu
Principal moments of inertia in cm(-1)
A = 0.008217 B = 0.004597 C = 0.003296
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3406.763660 B = 6089.257581 C = 8493.779477
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.027 3.973
2 O -0.404 6.404
3 C 0.050 3.950
4 C 0.116 3.884
5 N -0.594 5.594
6 C 0.254 3.746
7 C -0.531 4.531
8 H 0.059 0.941
9 C 0.026 3.974
10 N -0.922 5.922
11 Si 0.949 3.051
12 H -0.266 1.266
13 H -0.279 1.279
14 H -0.284 1.284
15 C 0.529 3.471
16 O -0.576 6.576
17 C -0.119 4.119
18 H 0.091 0.909
19 C -0.104 4.104
20 C 0.046 3.954
21 N -0.475 5.475
22 C 0.141 3.859
23 C -0.223 4.223
24 C 0.117 3.883
25 N -0.535 5.535
26 C 0.117 3.883
27 C -0.223 4.223
28 C 0.063 3.937
29 H 0.088 0.912
30 H 0.055 0.945
31 H 0.040 0.960
32 H 0.044 0.956
33 H 0.080 0.920
34 H 0.099 0.901
35 H 0.074 0.926
36 H 0.022 0.978
37 H 0.019 0.981
38 H 0.266 0.734
39 H 0.092 0.908
40 H 0.070 0.930
41 H 0.110 0.890
42 H 0.072 0.928
43 H 0.142 0.858
44 H 0.178 0.822
45 H 0.180 0.820
46 H 0.152 0.848
47 H 0.090 0.910
48 H 0.076 0.924
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.247 -8.631 1.533 9.050
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.069 4.069
2 O -0.324 6.324
3 C -0.027 4.027
4 C -0.007 4.007
5 N -0.324 5.324
6 C 0.134 3.866
7 C -0.569 4.569
8 H 0.077 0.923
9 C -0.175 4.175
10 N -0.562 5.562
11 Si 0.775 3.225
12 H -0.190 1.190
13 H -0.205 1.205
14 H -0.210 1.210
15 C 0.318 3.682
16 O -0.457 6.457
17 C -0.141 4.141
18 H 0.109 0.891
19 C -0.142 4.142
20 C -0.079 4.079
21 N -0.187 5.187
22 C 0.033 3.967
23 C -0.246 4.246
24 C -0.039 4.039
25 N -0.246 5.246
26 C -0.039 4.039
27 C -0.246 4.246
28 C -0.063 4.063
29 H 0.107 0.893
30 H 0.074 0.926
31 H 0.059 0.941
32 H 0.062 0.938
33 H 0.098 0.902
34 H 0.117 0.883
35 H 0.093 0.907
36 H 0.040 0.960
37 H 0.037 0.963
38 H 0.075 0.925
39 H 0.110 0.890
40 H 0.088 0.912
41 H 0.128 0.872
42 H 0.091 0.909
43 H 0.160 0.840
44 H 0.195 0.805
45 H 0.197 0.803
46 H 0.170 0.830
47 H 0.108 0.892
48 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges -2.306 -9.794 1.602 10.188
hybrid contribution 0.443 1.985 0.111 2.037
sum -1.863 -7.809 1.713 8.209
Atomic orbital electron populations
1.22858 0.80334 1.03185 1.00511 1.88043 1.20727 1.28138 1.95451
1.22973 0.93892 0.84908 1.00928 1.21493 0.92862 0.98909 0.87442
1.48041 1.64774 1.07243 1.12314 1.19071 0.96057 0.90200 0.81305
1.21627 0.96534 1.32141 1.06638 0.92269 1.25565 1.00869 0.95959
0.95072 1.70024 1.36566 1.38614 1.10966 0.85637 0.80634 0.77973
0.78273 1.19011 1.20480 1.21034 1.20208 0.76943 0.82181 0.88909
1.90581 1.54140 1.63370 1.37592 1.22341 0.98459 0.95957 0.97386
0.89086 1.22577 0.91810 0.99130 1.00677 1.23365 0.95424 0.89569
0.99544 1.60273 1.09376 1.23197 1.25894 1.19756 0.94009 0.94822
0.88120 1.22075 0.97031 1.03705 1.01770 1.22947 0.98858 0.93817
0.88234 1.67765 1.03485 1.22684 1.30702 1.23001 0.93332 0.90893
0.96690 1.22207 1.02125 1.05600 0.94676 1.22912 0.90886 0.90117
1.02369 0.89335 0.92621 0.94104 0.93761 0.90225 0.88291 0.90712
0.95968 0.96333 0.92519 0.88988 0.91170 0.87224 0.90945 0.84016
0.80487 0.80323 0.83000 0.89231 0.90620
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.68 11.01 113.37 1.25 1.92 16
2 O -0.40 -13.88 9.84 -148.21 -1.46 -15.34 16
3 C 0.05 1.56 6.29 71.98 0.45 2.02 16
4 C 0.12 4.10 5.84 86.38 0.50 4.60 16
5 N -0.59 -24.13 2.40 -826.16 -1.98 -26.11 16
6 C 0.25 11.51 4.94 85.63 0.42 11.93 16
7 C -0.53 -25.31 8.24 25.60 0.21 -25.10 16
8 H 0.06 2.85 7.81 -2.91 -0.02 2.82 16
9 C 0.03 1.26 5.46 84.65 0.46 1.72 16
10 N -0.92 -48.49 13.29 21.45 0.28 -48.20 16
11 Si 0.95 39.21 29.54 68.60 2.03 41.23 16
12 H -0.27 -10.68 7.11 99.48 0.71 -9.98 16
13 H -0.28 -11.36 7.11 99.48 0.71 -10.65 16
14 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16
15 C 0.53 21.60 6.59 87.65 0.58 22.18 16
16 O -0.58 -25.61 14.60 -2.26 -0.03 -25.64 16
17 C -0.12 -4.31 2.71 -10.36 -0.03 -4.34 16
18 H 0.09 3.55 6.02 -2.38 -0.01 3.54 16
19 C -0.10 -3.42 6.45 31.98 0.21 -3.21 16
20 C 0.05 1.25 5.51 86.77 0.48 1.72 16
21 N -0.48 -13.78 5.26 -684.56 -3.60 -17.38 16
22 C 0.14 3.84 5.79 38.58 0.22 4.06 16
23 C -0.22 -5.65 8.67 22.49 0.19 -5.45 16
24 C 0.12 2.77 11.17 84.59 0.95 3.71 16
25 N -0.53 -13.79 10.36 -196.15 -2.03 -15.82 16
26 C 0.12 2.67 11.17 84.59 0.94 3.62 16
27 C -0.22 -5.32 8.73 22.49 0.20 -5.12 16
28 C 0.06 2.02 5.77 86.65 0.50 2.52 16
29 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16
30 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16
31 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16
32 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16
33 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16
34 H 0.10 3.26 8.11 -2.39 -0.02 3.24 16
35 H 0.07 2.73 7.35 -2.39 -0.02 2.71 16
36 H 0.02 1.08 5.97 -2.39 -0.01 1.06 16
37 H 0.02 0.89 8.07 -2.39 -0.02 0.88 16
38 H 0.27 13.34 8.31 -92.71 -0.77 12.57 16
39 H 0.09 3.31 7.03 -2.38 -0.02 3.30 16
40 H 0.07 2.37 8.04 -2.39 -0.02 2.35 16
41 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16
42 H 0.07 1.90 6.58 -2.39 -0.02 1.88 16
43 H 0.14 3.33 6.83 -2.91 -0.02 3.31 16
44 H 0.18 3.08 8.06 -2.91 -0.02 3.06 16
45 H 0.18 2.94 8.06 -2.91 -0.02 2.92 16
46 H 0.15 3.03 6.58 -2.91 -0.02 3.01 16
47 H 0.09 3.17 6.76 -2.39 -0.02 3.16 16
48 H 0.08 2.29 5.94 -2.39 -0.01 2.27 16
Total: -1.00 -61.98 385.30 1.70 -60.29
By element:
Atomic # 1 Polarization: 29.23 SS G_CDS: 0.96 Total: 30.19 kcal
Atomic # 6 Polarization: 9.25 SS G_CDS: 7.54 Total: 16.79 kcal
Atomic # 7 Polarization: -100.18 SS G_CDS: -7.33 Total: -107.51 kcal
Atomic # 8 Polarization: -39.49 SS G_CDS: -1.49 Total: -40.98 kcal
Atomic # 14 Polarization: 39.21 SS G_CDS: 2.03 Total: 41.23 kcal
Total: -61.98 1.70 -60.29 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001472518477.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 14.071 kcal
(2) G-P(sol) polarization free energy of solvation -61.984 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.913 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.698 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.286 kcal
(6) G-S(sol) free energy of system = (1) + (5) -46.215 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds