Wall clock time and date at job start Tue Mar 31 2020 17:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 114.00045 * 2 1 4 4 C 1.53000 * 109.47239 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47460 * 63.38333 * 4 3 2 6 6 C 1.46501 * 119.99716 * 84.55907 * 5 4 3 7 7 C 1.50702 * 109.47074 * 90.00102 * 6 5 4 8 8 H 1.07996 * 119.99675 * 0.02562 * 7 6 5 9 9 C 1.37868 * 120.00040 * 179.97438 * 7 6 5 10 10 N 1.31522 * 120.00016 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00269 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.46981 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.47472 * 120.00030 * 11 9 7 14 14 H 1.48497 * 109.47157 * 240.00489 * 11 9 7 15 15 C 1.34779 * 120.00108 * 264.56259 * 5 4 3 16 16 O 1.21280 * 119.99817 * 5.84509 * 15 5 4 17 17 C 1.50693 * 119.99845 * 185.84669 * 15 5 4 18 18 H 1.09004 * 110.62965 * 326.50468 * 17 15 5 19 19 C 1.55140 * 110.70686 * 89.80401 * 17 15 5 20 20 C 1.54900 * 101.65608 * 154.03726 * 19 17 15 21 21 N 1.47850 * 104.79566 * 322.92945 * 20 19 17 22 22 C 1.39160 * 111.00032 * 146.36439 * 21 20 19 23 23 C 1.39477 * 120.86497 * 203.51406 * 22 21 20 24 24 C 1.37900 * 119.06622 * 179.72996 * 23 22 21 25 25 N 1.31994 * 120.84467 * 0.55658 * 24 23 22 26 26 C 1.31994 * 121.90677 * 359.71145 * 25 24 23 27 27 C 1.37891 * 120.84438 * 0.02562 * 26 25 24 28 28 C 1.47438 * 108.56560 * 24.09568 * 21 20 19 29 29 H 1.09005 * 109.47033 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47099 * 300.00411 * 1 2 3 31 31 H 1.09002 * 109.46786 * 60.00084 * 1 2 3 32 32 H 1.09004 * 109.46694 * 299.99328 * 3 2 1 33 33 H 1.08992 * 109.47124 * 59.99729 * 3 2 1 34 34 H 1.08991 * 109.47593 * 183.38913 * 4 3 2 35 35 H 1.09004 * 109.46818 * 303.39090 * 4 3 2 36 36 H 1.09002 * 109.47148 * 210.00174 * 6 5 4 37 37 H 1.08996 * 109.46893 * 330.00436 * 6 5 4 38 38 H 0.96996 * 119.99693 * 179.97438 * 10 9 7 39 39 H 1.09011 * 110.98974 * 272.12818 * 19 17 15 40 40 H 1.08997 * 110.98972 * 35.94227 * 19 17 15 41 41 H 1.08997 * 110.37598 * 204.10027 * 20 19 17 42 42 H 1.09002 * 110.47329 * 81.80545 * 20 19 17 43 43 H 1.08000 * 120.46620 * 359.96959 * 23 22 21 44 44 H 1.08002 * 119.57602 * 180.24531 * 24 23 22 45 45 H 1.08005 * 119.57408 * 179.97438 * 26 25 24 46 46 H 1.08006 * 120.46699 * 180.02562 * 27 26 25 47 47 H 1.09004 * 109.88937 * 239.60425 * 28 21 20 48 48 H 1.08997 * 110.02701 * 118.49039 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9730 0.5295 -1.2358 6 6 4.1662 1.3187 -2.4548 7 6 5.5881 1.8146 -2.5121 8 1 6.2788 1.5664 -1.7199 9 6 6.0074 2.5844 -3.5763 10 7 5.1662 2.8863 -4.5412 11 14 7.7700 3.1985 -3.6477 12 1 8.5085 2.7239 -2.4500 13 1 8.4270 2.6763 -4.8728 14 1 7.7761 4.6832 -3.6773 15 6 4.1977 -0.7994 -1.2506 16 8 3.9370 -1.4694 -0.2739 17 6 4.7730 -1.4526 -2.4808 18 1 4.4231 -0.9492 -3.3821 19 6 6.3232 -1.4649 -2.4214 20 6 6.6609 -2.6848 -3.3141 21 7 5.6003 -3.6723 -3.0210 22 6 5.2887 -4.4201 -4.1525 23 6 4.0469 -5.0425 -4.2793 24 6 3.7753 -5.7699 -5.4189 25 7 4.6763 -5.8897 -6.3760 26 6 5.8643 -5.3207 -6.2911 27 6 6.2122 -4.5720 -5.1866 28 6 4.4147 -2.9531 -2.5200 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6887 1.8463 -0.8901 33 1 1.6886 1.8464 0.8899 34 1 3.9787 2.1785 0.0601 35 1 3.8533 0.5920 0.8572 36 1 3.9629 0.6966 -3.3265 37 1 3.4847 2.1693 -2.4486 38 1 5.4611 3.4282 -5.2897 39 1 6.7373 -0.5477 -2.8405 40 1 6.6736 -1.6189 -1.4008 41 1 7.6385 -3.0886 -3.0509 42 1 6.6379 -2.4046 -4.3672 43 1 3.3070 -4.9526 -3.4976 44 1 2.8149 -6.2519 -5.5274 45 1 6.5731 -5.4438 -7.0966 46 1 7.1858 -4.1088 -5.1237 47 1 4.1660 -3.3013 -1.5175 48 1 3.5695 -3.1151 -3.1889 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001472518477.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:29 Heat of formation + Delta-G solvation = -46.214579 kcal Electronic energy + Delta-G solvation = -29732.295748 eV Core-core repulsion = 25786.982572 eV Total energy + Delta-G solvation = -3945.313176 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.96933 -40.81136 -39.23517 -38.49205 -36.67714 -34.61537 -34.30579 -32.46394 -31.56275 -30.19258 -30.09982 -28.85642 -27.20569 -25.26306 -24.97620 -24.50546 -23.66706 -22.10553 -21.96194 -19.76605 -18.84689 -18.54928 -18.36362 -17.58866 -17.16113 -17.02006 -16.60475 -16.44313 -16.41543 -15.95986 -15.77353 -15.70811 -15.04198 -14.99302 -14.68920 -14.46957 -14.27873 -14.13975 -13.87994 -13.71481 -13.48441 -13.29056 -13.02273 -12.99788 -12.74816 -12.61539 -12.56363 -12.26907 -12.18977 -12.05954 -11.92733 -11.75039 -11.62500 -11.26105 -10.73169 -10.56985 -10.45802 -10.42049 -10.07697 -9.41383 -9.23839 -8.17353 -6.30730 0.24759 0.33287 1.41802 1.47218 1.55917 1.79923 2.26743 2.45012 2.61068 2.95568 3.01537 3.13638 3.45147 3.48133 3.64984 3.80534 3.94763 4.08311 4.11803 4.17337 4.18388 4.24301 4.26711 4.36603 4.42133 4.48071 4.52749 4.53570 4.60495 4.65725 4.76416 4.81389 4.83016 4.88097 4.89240 4.91959 4.94919 4.97613 5.09876 5.15937 5.27708 5.64746 5.69497 5.75550 5.86608 6.08239 6.08354 6.32427 6.61898 6.85837 7.11380 7.35470 7.47548 8.88407 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.008217 B = 0.004597 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3406.763660 B = 6089.257581 C = 8493.779477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.404 6.404 3 C 0.050 3.950 4 C 0.116 3.884 5 N -0.594 5.594 6 C 0.254 3.746 7 C -0.531 4.531 8 H 0.059 0.941 9 C 0.026 3.974 10 N -0.922 5.922 11 Si 0.949 3.051 12 H -0.266 1.266 13 H -0.279 1.279 14 H -0.284 1.284 15 C 0.529 3.471 16 O -0.576 6.576 17 C -0.119 4.119 18 H 0.091 0.909 19 C -0.104 4.104 20 C 0.046 3.954 21 N -0.475 5.475 22 C 0.141 3.859 23 C -0.223 4.223 24 C 0.117 3.883 25 N -0.535 5.535 26 C 0.117 3.883 27 C -0.223 4.223 28 C 0.063 3.937 29 H 0.088 0.912 30 H 0.055 0.945 31 H 0.040 0.960 32 H 0.044 0.956 33 H 0.080 0.920 34 H 0.099 0.901 35 H 0.074 0.926 36 H 0.022 0.978 37 H 0.019 0.981 38 H 0.266 0.734 39 H 0.092 0.908 40 H 0.070 0.930 41 H 0.110 0.890 42 H 0.072 0.928 43 H 0.142 0.858 44 H 0.178 0.822 45 H 0.180 0.820 46 H 0.152 0.848 47 H 0.090 0.910 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.247 -8.631 1.533 9.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.324 6.324 3 C -0.027 4.027 4 C -0.007 4.007 5 N -0.324 5.324 6 C 0.134 3.866 7 C -0.569 4.569 8 H 0.077 0.923 9 C -0.175 4.175 10 N -0.562 5.562 11 Si 0.775 3.225 12 H -0.190 1.190 13 H -0.205 1.205 14 H -0.210 1.210 15 C 0.318 3.682 16 O -0.457 6.457 17 C -0.141 4.141 18 H 0.109 0.891 19 C -0.142 4.142 20 C -0.079 4.079 21 N -0.187 5.187 22 C 0.033 3.967 23 C -0.246 4.246 24 C -0.039 4.039 25 N -0.246 5.246 26 C -0.039 4.039 27 C -0.246 4.246 28 C -0.063 4.063 29 H 0.107 0.893 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.098 0.902 34 H 0.117 0.883 35 H 0.093 0.907 36 H 0.040 0.960 37 H 0.037 0.963 38 H 0.075 0.925 39 H 0.110 0.890 40 H 0.088 0.912 41 H 0.128 0.872 42 H 0.091 0.909 43 H 0.160 0.840 44 H 0.195 0.805 45 H 0.197 0.803 46 H 0.170 0.830 47 H 0.108 0.892 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.306 -9.794 1.602 10.188 hybrid contribution 0.443 1.985 0.111 2.037 sum -1.863 -7.809 1.713 8.209 Atomic orbital electron populations 1.22858 0.80334 1.03185 1.00511 1.88043 1.20727 1.28138 1.95451 1.22973 0.93892 0.84908 1.00928 1.21493 0.92862 0.98909 0.87442 1.48041 1.64774 1.07243 1.12314 1.19071 0.96057 0.90200 0.81305 1.21627 0.96534 1.32141 1.06638 0.92269 1.25565 1.00869 0.95959 0.95072 1.70024 1.36566 1.38614 1.10966 0.85637 0.80634 0.77973 0.78273 1.19011 1.20480 1.21034 1.20208 0.76943 0.82181 0.88909 1.90581 1.54140 1.63370 1.37592 1.22341 0.98459 0.95957 0.97386 0.89086 1.22577 0.91810 0.99130 1.00677 1.23365 0.95424 0.89569 0.99544 1.60273 1.09376 1.23197 1.25894 1.19756 0.94009 0.94822 0.88120 1.22075 0.97031 1.03705 1.01770 1.22947 0.98858 0.93817 0.88234 1.67765 1.03485 1.22684 1.30702 1.23001 0.93332 0.90893 0.96690 1.22207 1.02125 1.05600 0.94676 1.22912 0.90886 0.90117 1.02369 0.89335 0.92621 0.94104 0.93761 0.90225 0.88291 0.90712 0.95968 0.96333 0.92519 0.88988 0.91170 0.87224 0.90945 0.84016 0.80487 0.80323 0.83000 0.89231 0.90620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 11.01 113.37 1.25 1.92 16 2 O -0.40 -13.88 9.84 -148.21 -1.46 -15.34 16 3 C 0.05 1.56 6.29 71.98 0.45 2.02 16 4 C 0.12 4.10 5.84 86.38 0.50 4.60 16 5 N -0.59 -24.13 2.40 -826.16 -1.98 -26.11 16 6 C 0.25 11.51 4.94 85.63 0.42 11.93 16 7 C -0.53 -25.31 8.24 25.60 0.21 -25.10 16 8 H 0.06 2.85 7.81 -2.91 -0.02 2.82 16 9 C 0.03 1.26 5.46 84.65 0.46 1.72 16 10 N -0.92 -48.49 13.29 21.45 0.28 -48.20 16 11 Si 0.95 39.21 29.54 68.60 2.03 41.23 16 12 H -0.27 -10.68 7.11 99.48 0.71 -9.98 16 13 H -0.28 -11.36 7.11 99.48 0.71 -10.65 16 14 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 15 C 0.53 21.60 6.59 87.65 0.58 22.18 16 16 O -0.58 -25.61 14.60 -2.26 -0.03 -25.64 16 17 C -0.12 -4.31 2.71 -10.36 -0.03 -4.34 16 18 H 0.09 3.55 6.02 -2.38 -0.01 3.54 16 19 C -0.10 -3.42 6.45 31.98 0.21 -3.21 16 20 C 0.05 1.25 5.51 86.77 0.48 1.72 16 21 N -0.48 -13.78 5.26 -684.56 -3.60 -17.38 16 22 C 0.14 3.84 5.79 38.58 0.22 4.06 16 23 C -0.22 -5.65 8.67 22.49 0.19 -5.45 16 24 C 0.12 2.77 11.17 84.59 0.95 3.71 16 25 N -0.53 -13.79 10.36 -196.15 -2.03 -15.82 16 26 C 0.12 2.67 11.17 84.59 0.94 3.62 16 27 C -0.22 -5.32 8.73 22.49 0.20 -5.12 16 28 C 0.06 2.02 5.77 86.65 0.50 2.52 16 29 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 30 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 33 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.10 3.26 8.11 -2.39 -0.02 3.24 16 35 H 0.07 2.73 7.35 -2.39 -0.02 2.71 16 36 H 0.02 1.08 5.97 -2.39 -0.01 1.06 16 37 H 0.02 0.89 8.07 -2.39 -0.02 0.88 16 38 H 0.27 13.34 8.31 -92.71 -0.77 12.57 16 39 H 0.09 3.31 7.03 -2.38 -0.02 3.30 16 40 H 0.07 2.37 8.04 -2.39 -0.02 2.35 16 41 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 42 H 0.07 1.90 6.58 -2.39 -0.02 1.88 16 43 H 0.14 3.33 6.83 -2.91 -0.02 3.31 16 44 H 0.18 3.08 8.06 -2.91 -0.02 3.06 16 45 H 0.18 2.94 8.06 -2.91 -0.02 2.92 16 46 H 0.15 3.03 6.58 -2.91 -0.02 3.01 16 47 H 0.09 3.17 6.76 -2.39 -0.02 3.16 16 48 H 0.08 2.29 5.94 -2.39 -0.01 2.27 16 Total: -1.00 -61.98 385.30 1.70 -60.29 By element: Atomic # 1 Polarization: 29.23 SS G_CDS: 0.96 Total: 30.19 kcal Atomic # 6 Polarization: 9.25 SS G_CDS: 7.54 Total: 16.79 kcal Atomic # 7 Polarization: -100.18 SS G_CDS: -7.33 Total: -107.51 kcal Atomic # 8 Polarization: -39.49 SS G_CDS: -1.49 Total: -40.98 kcal Atomic # 14 Polarization: 39.21 SS G_CDS: 2.03 Total: 41.23 kcal Total: -61.98 1.70 -60.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001472518477.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.071 kcal (2) G-P(sol) polarization free energy of solvation -61.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds