Wall clock time and date at job start Tue Mar 31 2020 17:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34776 * 119.99769 * 2 1 4 4 O 1.21287 * 120.00123 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00513 * 180.02562 * 3 2 1 6 6 C 1.52995 * 109.47846 * 180.02562 * 5 3 2 7 7 C 1.52990 * 109.47353 * 180.02562 * 6 5 3 8 8 C 1.50703 * 109.47398 * 179.97438 * 7 6 5 9 9 O 1.21283 * 119.99488 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00290 * 180.02562 * 8 7 6 11 11 C 1.46498 * 119.99828 * 180.27728 * 10 8 7 12 12 C 1.52996 * 109.47059 * 179.72339 * 11 10 8 13 13 H 1.09000 * 109.47046 * 294.99604 * 12 11 10 14 14 N 1.46494 * 109.47509 * 54.99655 * 12 11 10 15 15 C 1.36934 * 120.00488 * 205.00279 * 14 12 11 16 16 H 1.08003 * 119.99785 * 359.97438 * 15 14 12 17 17 C 1.38817 * 120.00391 * 179.97438 * 15 14 12 18 18 N 1.31621 * 119.99622 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00020 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47035 * 60.00563 * 19 17 15 21 21 H 1.48498 * 109.46642 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47204 * 299.99988 * 19 17 15 23 23 C 1.50703 * 109.47496 * 174.99895 * 12 11 10 24 24 C 1.38234 * 119.99878 * 279.72666 * 23 12 11 25 25 C 1.38233 * 119.99864 * 179.78660 * 24 23 12 26 26 C 1.38233 * 120.00095 * 0.43495 * 25 24 23 27 27 C 1.38237 * 120.00034 * 359.81784 * 26 25 24 28 28 C 1.38232 * 119.99833 * 99.99541 * 23 12 11 29 29 H 1.08998 * 109.47425 * 299.99993 * 1 2 3 30 30 H 1.08997 * 109.47409 * 60.00226 * 1 2 3 31 31 H 1.08998 * 109.46745 * 179.97438 * 1 2 3 32 32 H 0.96994 * 120.00528 * 180.02562 * 2 1 3 33 33 H 1.08999 * 109.46772 * 59.99331 * 5 3 2 34 34 H 1.09003 * 109.46720 * 300.00556 * 5 3 2 35 35 H 1.08998 * 109.47142 * 59.99444 * 6 5 3 36 36 H 1.09011 * 109.46657 * 300.00002 * 6 5 3 37 37 H 1.08998 * 109.47508 * 59.99597 * 7 6 5 38 38 H 1.09002 * 109.47337 * 299.99883 * 7 6 5 39 39 H 0.97001 * 119.99727 * 359.97438 * 10 8 7 40 40 H 1.09004 * 109.46963 * 299.72135 * 11 10 8 41 41 H 1.08994 * 109.47567 * 59.72287 * 11 10 8 42 42 H 0.97009 * 119.99912 * 24.99842 * 14 12 11 43 43 H 0.97003 * 119.99413 * 180.02562 * 18 17 15 44 44 H 1.08003 * 119.99690 * 359.97438 * 24 23 12 45 45 H 1.08007 * 119.99595 * 180.28075 * 25 24 23 46 46 H 1.08001 * 119.99739 * 179.83577 * 26 25 24 47 47 H 1.07991 * 120.00123 * 179.97438 * 27 26 25 48 48 H 1.08001 * 120.00576 * 359.97438 * 28 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5324 2.2176 -0.0005 5 6 3.6458 1.1674 -0.0006 6 6 4.1558 2.6099 0.0002 7 6 5.6857 2.6099 -0.0011 8 6 6.1881 4.0308 -0.0009 9 8 5.3999 4.9526 -0.0004 10 7 7.5131 4.2771 -0.0024 11 6 8.0014 5.6583 0.0038 12 6 9.5313 5.6584 0.0076 13 1 9.8924 5.2208 0.9383 14 7 10.0225 4.8703 -1.1255 15 6 11.2639 4.2949 -1.0724 16 1 11.8811 4.4223 -0.1953 17 6 11.7292 3.5477 -2.1458 18 7 10.9772 3.3928 -3.2149 19 14 13.4230 2.7632 -2.0736 20 1 13.4836 1.8209 -0.9275 21 1 13.6808 2.0252 -3.3361 22 1 14.4511 3.8206 -1.9000 23 6 10.0340 7.0743 -0.1099 24 6 10.0767 7.6923 -1.3457 25 6 10.5336 8.9925 -1.4528 26 6 10.9563 9.6717 -0.3254 27 6 10.9185 9.0519 0.9097 28 6 10.4575 7.7530 1.0174 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.9500 -0.8399 -0.0004 33 1 4.0088 0.6537 -0.8908 34 1 4.0095 0.6533 0.8891 35 1 3.7928 3.1231 0.8906 36 1 3.7921 3.1243 -0.8894 37 1 6.0484 2.0968 -0.8917 38 1 6.0498 2.0954 0.8882 39 1 8.1435 3.5398 -0.0032 40 1 7.6402 6.1754 -0.8852 41 1 7.6359 6.1689 0.8947 42 1 9.4683 4.7561 -1.9134 43 1 11.3021 2.8703 -3.9648 44 1 9.7502 7.1602 -2.2270 45 1 10.5627 9.4768 -2.4177 46 1 11.3157 10.6866 -0.4095 47 1 11.2490 9.5823 1.7903 48 1 10.4278 7.2689 1.9823 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481364142.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:39 Heat of formation + Delta-G solvation = -52.518782 kcal Electronic energy + Delta-G solvation = -27557.804931 eV Core-core repulsion = 23612.218385 eV Total energy + Delta-G solvation = -3945.586546 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.92919 -39.39763 -38.72252 -35.94563 -34.89772 -34.20906 -33.52923 -32.00136 -30.40407 -29.60853 -29.48107 -27.54198 -26.25474 -23.84557 -22.96447 -22.09462 -21.82089 -20.52037 -20.06666 -19.73166 -17.68881 -17.32649 -16.65216 -16.25002 -16.24046 -15.94621 -15.56022 -15.36139 -14.93751 -14.62033 -14.19637 -14.12365 -13.98997 -13.50567 -13.41268 -13.02627 -12.89716 -12.83783 -12.76595 -12.62230 -12.33239 -12.10540 -11.96239 -11.75224 -11.45265 -11.11235 -10.95986 -10.84154 -10.76848 -10.70447 -10.45935 -10.19185 -10.08562 -9.81830 -9.50421 -9.41396 -9.08560 -8.60928 -8.39595 -8.17890 -7.14889 -5.88575 -3.19782 1.87281 1.93855 2.46711 2.94938 3.01400 3.36408 3.42360 3.42916 3.62560 4.31849 4.48942 4.50704 4.79383 4.91153 4.92203 5.08619 5.18440 5.25325 5.34652 5.36697 5.41770 5.43101 5.44332 5.47473 5.56044 5.57929 5.62602 5.69403 5.81707 5.89672 6.05083 6.08846 6.10768 6.13541 6.29612 6.39968 6.43928 6.50311 6.64329 6.86207 6.95211 7.03629 7.18971 7.29357 7.53962 7.61378 7.96996 8.01777 8.27758 8.63133 9.40679 9.90946 10.27821 11.32717 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010441 B = 0.002488 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2681.065732 B =11251.549029 C =13397.057808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.742 5.742 3 C 0.509 3.491 4 O -0.533 6.533 5 C -0.141 4.141 6 C -0.088 4.088 7 C -0.141 4.141 8 C 0.509 3.491 9 O -0.551 6.551 10 N -0.715 5.715 11 C 0.121 3.879 12 C 0.198 3.802 13 H 0.065 0.935 14 N -0.713 5.713 15 C -0.243 4.243 16 H 0.070 0.930 17 C -0.006 4.006 18 N -0.929 5.929 19 Si 0.906 3.094 20 H -0.285 1.285 21 H -0.291 1.291 22 H -0.286 1.286 23 C -0.082 4.082 24 C -0.083 4.083 25 C -0.128 4.128 26 C -0.134 4.134 27 C -0.130 4.130 28 C -0.120 4.120 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.402 0.598 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.410 0.590 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.387 0.613 43 H 0.257 0.743 44 H 0.123 0.877 45 H 0.113 0.887 46 H 0.111 0.889 47 H 0.112 0.888 48 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.969 -4.704 7.851 15.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.395 5.395 3 C 0.296 3.704 4 O -0.409 6.409 5 C -0.181 4.181 6 C -0.126 4.126 7 C -0.182 4.182 8 C 0.295 3.705 9 O -0.430 6.430 10 N -0.367 5.367 11 C -0.004 4.004 12 C 0.087 3.913 13 H 0.083 0.917 14 N -0.354 5.354 15 C -0.374 4.374 16 H 0.088 0.912 17 C -0.203 4.203 18 N -0.576 5.576 19 Si 0.737 3.263 20 H -0.212 1.212 21 H -0.217 1.217 22 H -0.213 1.213 23 C -0.086 4.086 24 C -0.101 4.101 25 C -0.146 4.146 26 C -0.153 4.153 27 C -0.148 4.148 28 C -0.139 4.139 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.235 0.765 33 H 0.114 0.886 34 H 0.113 0.887 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.114 0.886 38 H 0.110 0.890 39 H 0.247 0.753 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.222 0.778 43 H 0.067 0.933 44 H 0.141 0.859 45 H 0.131 0.869 46 H 0.129 0.871 47 H 0.130 0.870 48 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -12.813 -3.375 7.859 15.406 hybrid contribution 1.582 -1.232 -0.408 2.046 sum -11.232 -4.607 7.451 14.244 Atomic orbital electron populations 1.21514 0.79887 1.02023 1.02344 1.45874 1.07737 1.08912 1.76935 1.20883 0.90631 0.83432 0.75424 1.90744 1.70576 1.31260 1.48332 1.21719 0.91297 1.00552 1.04573 1.21052 0.92697 0.93797 1.05046 1.21661 0.97116 0.94782 1.04592 1.20577 0.82360 0.91410 0.76148 1.90693 1.55485 1.46547 1.50261 1.45989 1.06899 1.09594 1.74210 1.21546 0.94232 0.82806 1.01792 1.19482 0.90169 0.87909 0.93725 0.91738 1.42448 1.18225 1.58528 1.16235 1.19142 0.92815 1.24559 1.00882 0.91181 1.24721 0.98295 1.00918 0.96322 1.69649 1.37003 1.44666 1.06286 0.86298 0.84292 0.79060 0.76681 1.21208 1.21730 1.21277 1.20990 0.97581 0.97057 0.92940 1.21006 0.97646 0.93650 0.97829 1.21107 1.00131 0.95310 0.98051 1.20979 1.01665 0.99502 0.93108 1.20980 1.01244 0.95445 0.97155 1.21007 1.00129 0.94662 0.98114 0.92315 0.92287 0.90805 0.76483 0.88570 0.88734 0.90554 0.90414 0.88575 0.89023 0.75335 0.91712 0.91675 0.77839 0.93346 0.85910 0.86867 0.87100 0.87010 0.86772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.57 10.70 59.85 0.64 1.21 16 2 N -0.74 -5.34 5.71 -67.08 -0.38 -5.72 16 3 C 0.51 5.46 7.83 -10.98 -0.09 5.37 16 4 O -0.53 -8.32 15.98 5.55 0.09 -8.23 16 5 C -0.14 -1.18 5.70 -27.88 -0.16 -1.34 16 6 C -0.09 -1.06 3.79 -26.74 -0.10 -1.16 16 7 C -0.14 -1.62 5.70 -27.89 -0.16 -1.78 16 8 C 0.51 8.10 7.83 -10.98 -0.09 8.02 16 9 O -0.55 -10.86 15.98 5.55 0.09 -10.77 16 10 N -0.71 -11.36 5.39 -60.30 -0.32 -11.69 16 11 C 0.12 2.05 5.21 -4.04 -0.02 2.03 16 12 C 0.20 3.62 2.65 -69.09 -0.18 3.44 16 13 H 0.06 1.17 7.94 -51.93 -0.41 0.75 16 14 N -0.71 -15.80 3.79 -54.55 -0.21 -16.00 16 15 C -0.24 -6.13 9.92 -15.06 -0.15 -6.28 16 16 H 0.07 1.76 7.83 -52.48 -0.41 1.35 16 17 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 18 N -0.93 -26.00 13.06 55.49 0.72 -25.27 16 19 Si 0.91 21.26 29.55 -169.99 -5.02 16.24 16 20 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 C -0.08 -1.48 4.92 -104.62 -0.52 -2.00 16 24 C -0.08 -1.54 9.33 -39.58 -0.37 -1.91 16 25 C -0.13 -2.10 10.05 -39.58 -0.40 -2.50 16 26 C -0.13 -2.01 10.05 -39.58 -0.40 -2.41 16 27 C -0.13 -1.93 10.05 -39.58 -0.40 -2.33 16 28 C -0.12 -1.94 9.67 -39.58 -0.38 -2.33 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.40 1.56 8.83 -40.82 -0.36 1.20 16 33 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.08 1.06 8.06 -51.93 -0.42 0.64 16 36 H 0.08 1.13 8.06 -51.92 -0.42 0.71 16 37 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.41 6.39 8.14 -40.82 -0.33 6.06 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 42 H 0.39 9.29 7.80 -40.82 -0.32 8.97 16 43 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 44 H 0.12 2.44 7.71 -52.48 -0.40 2.04 16 45 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 46 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 47 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 48 H 0.11 1.61 8.04 -52.49 -0.42 1.19 16 LS Contribution 407.84 15.07 6.15 6.15 Total: -1.00 -33.80 407.84 -9.46 -43.26 By element: Atomic # 1 Polarization: 23.97 SS G_CDS: -7.71 Total: 16.26 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: -2.86 Total: -4.22 kcal Atomic # 7 Polarization: -58.50 SS G_CDS: -0.19 Total: -58.69 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: 0.18 Total: -19.00 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.80 -9.46 -43.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481364142.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.261 kcal (2) G-P(sol) polarization free energy of solvation -33.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds