Wall clock time and date at job start Tue Mar 31 2020 17:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34776 * 119.99769 * 2 1 4 4 O 1.21287 * 120.00123 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00513 * 180.02562 * 3 2 1 6 6 C 1.52995 * 109.47846 * 180.02562 * 5 3 2 7 7 C 1.52990 * 109.47353 * 180.02562 * 6 5 3 8 8 C 1.50703 * 109.47398 * 179.97438 * 7 6 5 9 9 O 1.21283 * 119.99488 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00290 * 180.02562 * 8 7 6 11 11 C 1.46498 * 119.99828 * 180.27728 * 10 8 7 12 12 C 1.52996 * 109.47059 * 179.72339 * 11 10 8 13 13 H 1.09000 * 109.47046 * 294.99604 * 12 11 10 14 14 N 1.46494 * 109.47509 * 54.99655 * 12 11 10 15 15 C 1.36934 * 120.00488 * 205.00279 * 14 12 11 16 16 H 1.08003 * 119.99785 * 359.97438 * 15 14 12 17 17 C 1.38817 * 120.00391 * 179.97438 * 15 14 12 18 18 N 1.31621 * 119.99622 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00020 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47035 * 60.00563 * 19 17 15 21 21 H 1.48498 * 109.46642 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47204 * 299.99988 * 19 17 15 23 23 C 1.50703 * 109.47496 * 174.99895 * 12 11 10 24 24 C 1.38234 * 119.99878 * 279.72666 * 23 12 11 25 25 C 1.38233 * 119.99864 * 179.78660 * 24 23 12 26 26 C 1.38233 * 120.00095 * 0.43495 * 25 24 23 27 27 C 1.38237 * 120.00034 * 359.81784 * 26 25 24 28 28 C 1.38232 * 119.99833 * 99.99541 * 23 12 11 29 29 H 1.08998 * 109.47425 * 299.99993 * 1 2 3 30 30 H 1.08997 * 109.47409 * 60.00226 * 1 2 3 31 31 H 1.08998 * 109.46745 * 179.97438 * 1 2 3 32 32 H 0.96994 * 120.00528 * 180.02562 * 2 1 3 33 33 H 1.08999 * 109.46772 * 59.99331 * 5 3 2 34 34 H 1.09003 * 109.46720 * 300.00556 * 5 3 2 35 35 H 1.08998 * 109.47142 * 59.99444 * 6 5 3 36 36 H 1.09011 * 109.46657 * 300.00002 * 6 5 3 37 37 H 1.08998 * 109.47508 * 59.99597 * 7 6 5 38 38 H 1.09002 * 109.47337 * 299.99883 * 7 6 5 39 39 H 0.97001 * 119.99727 * 359.97438 * 10 8 7 40 40 H 1.09004 * 109.46963 * 299.72135 * 11 10 8 41 41 H 1.08994 * 109.47567 * 59.72287 * 11 10 8 42 42 H 0.97009 * 119.99912 * 24.99842 * 14 12 11 43 43 H 0.97003 * 119.99413 * 180.02562 * 18 17 15 44 44 H 1.08003 * 119.99690 * 359.97438 * 24 23 12 45 45 H 1.08007 * 119.99595 * 180.28075 * 25 24 23 46 46 H 1.08001 * 119.99739 * 179.83577 * 26 25 24 47 47 H 1.07991 * 120.00123 * 179.97438 * 27 26 25 48 48 H 1.08001 * 120.00576 * 359.97438 * 28 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5324 2.2176 -0.0005 5 6 3.6458 1.1674 -0.0006 6 6 4.1558 2.6099 0.0002 7 6 5.6857 2.6099 -0.0011 8 6 6.1881 4.0308 -0.0009 9 8 5.3999 4.9526 -0.0004 10 7 7.5131 4.2771 -0.0024 11 6 8.0014 5.6583 0.0038 12 6 9.5313 5.6584 0.0076 13 1 9.8924 5.2208 0.9383 14 7 10.0225 4.8703 -1.1255 15 6 11.2639 4.2949 -1.0724 16 1 11.8811 4.4223 -0.1953 17 6 11.7292 3.5477 -2.1458 18 7 10.9772 3.3928 -3.2149 19 14 13.4230 2.7632 -2.0736 20 1 13.4836 1.8209 -0.9275 21 1 13.6808 2.0252 -3.3361 22 1 14.4511 3.8206 -1.9000 23 6 10.0340 7.0743 -0.1099 24 6 10.0767 7.6923 -1.3457 25 6 10.5336 8.9925 -1.4528 26 6 10.9563 9.6717 -0.3254 27 6 10.9185 9.0519 0.9097 28 6 10.4575 7.7530 1.0174 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.9500 -0.8399 -0.0004 33 1 4.0088 0.6537 -0.8908 34 1 4.0095 0.6533 0.8891 35 1 3.7928 3.1231 0.8906 36 1 3.7921 3.1243 -0.8894 37 1 6.0484 2.0968 -0.8917 38 1 6.0498 2.0954 0.8882 39 1 8.1435 3.5398 -0.0032 40 1 7.6402 6.1754 -0.8852 41 1 7.6359 6.1689 0.8947 42 1 9.4683 4.7561 -1.9134 43 1 11.3021 2.8703 -3.9648 44 1 9.7502 7.1602 -2.2270 45 1 10.5627 9.4768 -2.4177 46 1 11.3157 10.6866 -0.4095 47 1 11.2490 9.5823 1.7903 48 1 10.4278 7.2689 1.9823 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481364142.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:38 Heat of formation + Delta-G solvation = -76.361554 kcal Electronic energy + Delta-G solvation = -27558.838832 eV Core-core repulsion = 23612.218385 eV Total energy + Delta-G solvation = -3946.620446 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.94960 -40.56313 -40.01892 -37.42106 -35.65402 -35.24760 -35.10629 -33.62095 -31.70019 -31.17147 -30.48199 -28.78758 -27.11303 -25.58673 -24.30586 -23.28905 -22.96282 -21.46543 -21.30633 -20.99117 -19.29793 -18.49236 -17.82613 -17.48365 -17.17892 -16.95423 -16.72019 -16.67675 -16.26288 -15.93529 -15.72492 -15.30239 -15.15161 -14.86734 -14.60554 -14.30585 -14.18442 -14.08209 -13.92621 -13.66016 -13.41898 -13.17553 -12.91317 -12.85457 -12.77537 -12.67189 -12.42429 -12.39690 -12.16951 -12.00309 -11.82822 -11.70098 -11.61805 -11.06426 -10.97232 -10.75883 -10.11355 -9.99635 -9.67710 -9.52128 -9.01420 -7.89652 -5.19153 0.58960 0.64919 1.50801 1.53015 1.57968 1.66685 1.73750 2.21459 2.48406 2.58738 3.02745 3.44114 3.74082 3.80972 3.91348 4.07357 4.10010 4.12679 4.16836 4.22500 4.34933 4.38387 4.41178 4.44823 4.58333 4.65085 4.66917 4.72202 4.74715 4.79948 4.80475 4.88926 4.95733 5.05174 5.19476 5.23533 5.30933 5.37308 5.49205 5.54020 5.58079 5.69684 5.73546 5.94413 6.26240 6.30248 6.59439 6.67432 7.31775 7.34666 7.38276 8.05525 8.32968 9.32125 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010441 B = 0.002488 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2681.065732 B =11251.549029 C =13397.057808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.725 5.725 3 C 0.501 3.499 4 O -0.595 6.595 5 C -0.131 4.131 6 C -0.083 4.083 7 C -0.130 4.130 8 C 0.502 3.498 9 O -0.596 6.596 10 N -0.711 5.711 11 C 0.131 3.869 12 C 0.206 3.794 13 H 0.073 0.927 14 N -0.717 5.717 15 C -0.230 4.230 16 H 0.073 0.927 17 C -0.063 4.063 18 N -0.962 5.962 19 Si 0.963 3.037 20 H -0.274 1.274 21 H -0.300 1.300 22 H -0.289 1.289 23 C -0.103 4.103 24 C -0.111 4.111 25 C -0.138 4.138 26 C -0.131 4.131 27 C -0.126 4.126 28 C -0.127 4.127 29 H 0.046 0.954 30 H 0.043 0.957 31 H 0.112 0.888 32 H 0.421 0.579 33 H 0.124 0.876 34 H 0.130 0.870 35 H 0.050 0.950 36 H 0.042 0.958 37 H 0.114 0.886 38 H 0.128 0.872 39 H 0.414 0.586 40 H 0.042 0.958 41 H 0.073 0.927 42 H 0.375 0.625 43 H 0.249 0.751 44 H 0.095 0.905 45 H 0.127 0.873 46 H 0.144 0.856 47 H 0.147 0.853 48 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.724 -5.782 9.866 15.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.378 5.378 3 C 0.289 3.711 4 O -0.476 6.476 5 C -0.170 4.170 6 C -0.122 4.122 7 C -0.169 4.169 8 C 0.290 3.710 9 O -0.477 6.477 10 N -0.363 5.363 11 C 0.006 3.994 12 C 0.096 3.904 13 H 0.091 0.909 14 N -0.357 5.357 15 C -0.362 4.362 16 H 0.091 0.909 17 C -0.256 4.256 18 N -0.613 5.613 19 Si 0.793 3.207 20 H -0.199 1.199 21 H -0.227 1.227 22 H -0.216 1.216 23 C -0.106 4.106 24 C -0.129 4.129 25 C -0.156 4.156 26 C -0.149 4.149 27 C -0.144 4.144 28 C -0.145 4.145 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.131 0.869 32 H 0.258 0.742 33 H 0.142 0.858 34 H 0.148 0.852 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.133 0.867 38 H 0.146 0.854 39 H 0.251 0.749 40 H 0.061 0.939 41 H 0.091 0.909 42 H 0.208 0.792 43 H 0.058 0.942 44 H 0.113 0.887 45 H 0.145 0.855 46 H 0.162 0.838 47 H 0.165 0.835 48 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -11.551 -4.503 9.922 15.879 hybrid contribution 1.146 -0.784 -0.972 1.695 sum -10.405 -5.287 8.950 14.708 Atomic orbital electron populations 1.21636 0.79457 1.04112 1.01038 1.45782 1.08173 1.08853 1.74971 1.21376 0.91738 0.83394 0.74582 1.90724 1.71828 1.33549 1.51462 1.21693 0.89524 0.98247 1.07550 1.20920 0.93125 0.95987 1.02141 1.21689 0.96354 0.91792 1.07085 1.21447 0.81753 0.93019 0.74743 1.90676 1.56404 1.48403 1.52230 1.45987 1.07194 1.09142 1.73928 1.21354 0.93423 0.83547 1.01049 1.19529 0.90601 0.87873 0.92384 0.90944 1.42466 1.17307 1.59057 1.16825 1.19411 0.93471 1.22942 1.00362 0.90868 1.25356 1.01254 1.02506 0.96455 1.69795 1.38428 1.46153 1.06887 0.85381 0.80755 0.78162 0.76405 1.19946 1.22710 1.21609 1.20924 0.99030 0.96994 0.93691 1.20951 0.99706 0.94988 0.97279 1.21344 0.99964 0.94592 0.99680 1.21388 1.00272 1.00801 0.92475 1.21418 0.99692 0.94898 0.98412 1.21288 0.99588 0.95469 0.98168 0.93555 0.93788 0.86946 0.74155 0.85835 0.85158 0.93113 0.93945 0.86749 0.85407 0.74888 0.93933 0.90892 0.79243 0.94188 0.88695 0.85510 0.83834 0.83523 0.84710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.98 10.70 127.77 1.37 2.35 16 2 N -0.73 -9.17 5.71 -484.53 -2.77 -11.94 16 3 C 0.50 10.46 7.83 87.66 0.69 11.14 16 4 O -0.60 -19.48 15.98 -3.05 -0.05 -19.53 16 5 C -0.13 -1.91 5.70 29.85 0.17 -1.74 16 6 C -0.08 -2.01 3.79 30.59 0.12 -1.89 16 7 C -0.13 -2.79 5.70 29.85 0.17 -2.62 16 8 C 0.50 16.17 7.83 87.66 0.69 16.85 16 9 O -0.60 -24.51 15.98 -3.04 -0.05 -24.56 16 10 N -0.71 -22.71 5.39 -463.07 -2.49 -25.20 16 11 C 0.13 4.57 5.21 86.38 0.45 5.02 16 12 C 0.21 7.53 2.65 44.25 0.12 7.65 16 13 H 0.07 2.54 7.94 -2.39 -0.02 2.52 16 14 N -0.72 -32.27 3.79 -326.51 -1.24 -33.51 16 15 C -0.23 -11.59 9.92 84.04 0.83 -10.75 16 16 H 0.07 3.60 7.83 -2.91 -0.02 3.57 16 17 C -0.06 -3.34 5.50 84.86 0.47 -2.88 16 18 N -0.96 -54.96 13.06 21.65 0.28 -54.67 16 19 Si 0.96 43.70 29.55 68.60 2.03 45.72 16 20 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 21 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 22 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 23 C -0.10 -3.72 4.92 -19.87 -0.10 -3.81 16 24 C -0.11 -4.21 9.33 22.27 0.21 -4.01 16 25 C -0.14 -4.43 10.05 22.27 0.22 -4.21 16 26 C -0.13 -3.57 10.05 22.27 0.22 -3.35 16 27 C -0.13 -3.34 10.05 22.27 0.22 -3.12 16 28 C -0.13 -3.83 9.67 22.27 0.22 -3.61 16 29 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.04 0.67 8.14 -2.39 -0.02 0.66 16 31 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.42 1.95 8.83 -92.71 -0.82 1.14 16 33 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.13 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.05 1.47 8.06 -2.39 -0.02 1.45 16 36 H 0.04 1.31 8.06 -2.38 -0.02 1.29 16 37 H 0.11 2.12 8.14 -2.39 -0.02 2.11 16 38 H 0.13 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.41 12.68 8.14 -92.71 -0.75 11.92 16 40 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 41 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 42 H 0.37 18.67 7.80 -92.70 -0.72 17.95 16 43 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 44 H 0.09 4.05 7.71 -2.91 -0.02 4.03 16 45 H 0.13 3.59 8.06 -2.91 -0.02 3.56 16 46 H 0.14 2.94 8.06 -2.91 -0.02 2.92 16 47 H 0.15 2.86 8.06 -2.92 -0.02 2.84 16 48 H 0.14 3.43 8.04 -2.91 -0.02 3.41 16 Total: -1.00 -78.01 407.84 0.46 -77.55 By element: Atomic # 1 Polarization: 46.44 SS G_CDS: -1.32 Total: 45.12 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: 6.06 Total: 1.02 kcal Atomic # 7 Polarization: -119.11 SS G_CDS: -6.22 Total: -125.33 kcal Atomic # 8 Polarization: -43.99 SS G_CDS: -0.10 Total: -44.09 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Total: -78.01 0.46 -77.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481364142.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.189 kcal (2) G-P(sol) polarization free energy of solvation -78.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds