Wall clock time and date at job start Tue Mar 31 2020 17:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.34776 * 119.99992 * 2 1 4 4 O 1.21286 * 119.99902 * 180.27324 * 3 2 1 5 5 C 1.50696 * 120.00082 * 0.28010 * 3 2 1 6 6 C 1.52998 * 109.47007 * 179.97438 * 5 3 2 7 7 C 1.53003 * 109.47280 * 180.02562 * 6 5 3 8 8 N 1.46493 * 109.47447 * 180.02562 * 7 6 5 9 9 C 1.35766 * 119.62937 * 89.99955 * 8 7 6 10 10 C 1.35348 * 120.70480 * 179.97438 * 9 8 7 11 11 C 1.40200 * 119.94579 * 0.02562 * 10 9 8 12 12 C 1.36394 * 119.26755 * 0.02562 * 11 10 9 13 13 C 1.34662 * 119.62269 * 269.72881 * 8 7 6 14 14 O 1.22057 * 119.98642 * 359.97438 * 13 8 7 15 15 C 1.46504 * 120.00006 * 180.27985 * 2 1 3 16 16 H 1.08993 * 110.63993 * 230.35656 * 15 2 1 17 17 C 1.55158 * 110.71852 * 107.01828 * 15 2 1 18 18 C 1.54910 * 101.58155 * 277.13890 * 17 15 2 19 19 N 1.47419 * 104.83424 * 322.99343 * 18 17 15 20 20 C 1.36947 * 125.64934 * 204.09445 * 19 18 17 21 21 H 1.07996 * 119.99839 * 180.02562 * 20 19 18 22 22 C 1.38812 * 119.99832 * 0.03920 * 20 19 18 23 23 N 1.31613 * 120.00125 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99707 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47037 * 359.97438 * 24 22 20 26 26 H 1.48493 * 109.47028 * 119.99995 * 24 22 20 27 27 H 1.48498 * 109.46890 * 239.99861 * 24 22 20 28 28 C 1.47026 * 108.70591 * 24.12754 * 19 18 17 29 29 H 1.08999 * 109.47259 * 264.45763 * 1 2 3 30 30 H 1.09009 * 109.47166 * 24.45481 * 1 2 3 31 31 H 1.09002 * 109.47875 * 144.45552 * 1 2 3 32 32 H 1.08997 * 109.47428 * 299.99580 * 5 3 2 33 33 H 1.09001 * 109.47008 * 60.00229 * 5 3 2 34 34 H 1.09001 * 109.47751 * 299.99954 * 6 5 3 35 35 H 1.09004 * 109.47053 * 60.00297 * 6 5 3 36 36 H 1.09011 * 109.47061 * 300.00230 * 7 6 5 37 37 H 1.08996 * 109.47155 * 59.99919 * 7 6 5 38 38 H 1.07997 * 119.64504 * 359.97438 * 9 8 7 39 39 H 1.07998 * 120.02543 * 179.97438 * 10 9 8 40 40 H 1.07997 * 120.36520 * 179.97438 * 11 10 9 41 41 H 1.07996 * 120.34990 * 180.02562 * 12 11 10 42 42 H 1.08997 * 111.00928 * 35.21132 * 17 15 2 43 43 H 1.08996 * 111.00300 * 159.06800 * 17 15 2 44 44 H 1.08999 * 110.36822 * 204.15506 * 18 17 15 45 45 H 1.09004 * 110.46167 * 81.87839 * 18 17 15 46 46 H 0.96991 * 120.00388 * 180.02562 * 23 22 20 47 47 H 1.08995 * 109.88386 * 239.52846 * 28 19 18 48 48 H 1.08994 * 109.88393 * 118.35373 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3516 1.1672 -0.0050 5 6 1.3853 2.4723 0.0064 6 6 2.3796 3.6351 0.0057 7 6 1.6147 4.9602 0.0128 8 7 2.5666 6.0737 0.0115 9 6 2.9974 6.5871 -1.1692 10 6 3.8763 7.6161 -1.1959 11 6 4.3513 8.1620 0.0050 12 6 3.9182 7.6442 1.1902 13 6 3.0003 6.5800 1.1815 14 8 2.5997 6.1113 2.2349 15 6 2.1974 -1.2687 -0.0062 16 1 2.9531 -1.2799 0.7792 17 6 2.8397 -1.5250 -1.3952 18 6 1.6502 -2.1313 -2.1808 19 7 0.9339 -2.9641 -1.1977 20 6 0.1272 -4.0308 -1.4923 21 1 -0.3554 -4.5788 -0.6966 22 6 -0.0701 -4.4077 -2.8136 23 7 0.5178 -3.7396 -3.7833 24 14 -1.1711 -5.8622 -3.2155 25 1 -1.7090 -6.4385 -1.9570 26 1 -2.2954 -5.4098 -4.0736 27 1 -0.3835 -6.8951 -3.9354 28 6 1.2284 -2.4594 0.1515 29 1 -0.3634 -0.0993 1.0228 30 1 -0.3634 0.9355 -0.4255 31 1 -0.3635 -0.8362 -0.5974 32 1 0.7550 2.5323 -0.8808 33 1 0.7625 2.5278 0.8992 34 1 3.0097 3.5751 0.8930 35 1 3.0028 3.5798 -0.8869 36 1 0.9842 5.0206 -0.8745 37 1 0.9918 5.0154 0.9055 38 1 2.6349 6.1699 -2.0971 39 1 4.2120 8.0157 -2.1413 40 1 5.0530 8.9828 -0.0084 41 1 4.2724 8.0516 2.1255 42 1 3.1731 -0.5920 -1.8496 43 1 3.6617 -2.2368 -1.3201 44 1 2.0134 -2.7451 -3.0050 45 1 0.9988 -1.3416 -2.5553 46 1 0.3797 -4.0027 -4.7066 47 1 1.6977 -3.2430 0.7461 48 1 0.3082 -2.1273 0.6320 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481733939.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:05 Heat of formation + Delta-G solvation = -0.569610 kcal Electronic energy + Delta-G solvation = -28515.380637 eV Core-core repulsion = 24572.046776 eV Total energy + Delta-G solvation = -3943.333861 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.59640 -39.94203 -37.47668 -37.12946 -35.73956 -34.50329 -33.04324 -32.02346 -30.15696 -29.47692 -28.13596 -27.04580 -26.56119 -24.48111 -24.09954 -23.43027 -22.02810 -20.51112 -20.00794 -18.54277 -17.81572 -17.58121 -17.00822 -16.77588 -16.62668 -16.13373 -15.79592 -15.76158 -14.96018 -14.81371 -14.52850 -14.37149 -13.81163 -13.73256 -13.14480 -12.98394 -12.76778 -12.63394 -12.49943 -12.35840 -12.21097 -12.11499 -11.94458 -11.88889 -11.63970 -11.42064 -11.02356 -10.99286 -10.94844 -10.71940 -10.40487 -10.24736 -10.16392 -10.12080 -9.95308 -9.67131 -9.43037 -8.71024 -8.26829 -8.24294 -6.90298 -5.70649 -3.13514 0.52981 1.58905 2.33101 2.85844 3.25618 3.35444 3.39963 3.41430 3.43650 4.22875 4.29995 4.43643 4.48162 4.55642 4.72747 4.80751 4.92306 4.96106 5.01678 5.14196 5.20391 5.32173 5.36729 5.42472 5.48048 5.52213 5.66537 5.69275 5.75882 5.76770 5.83043 5.89385 5.96121 6.03225 6.14311 6.22464 6.31835 6.35663 6.51016 6.65621 6.71028 6.80001 7.02561 7.48217 7.57902 7.70635 7.78962 7.81860 8.30676 8.43039 9.16015 9.76476 10.40987 11.32696 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.027317 B = 0.002068 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.745619 B =13536.898380 C =13781.810343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.595 5.595 3 C 0.511 3.489 4 O -0.546 6.546 5 C -0.135 4.135 6 C -0.116 4.116 7 C 0.088 3.912 8 N -0.493 5.493 9 C 0.138 3.862 10 C -0.238 4.238 11 C -0.017 4.017 12 C -0.247 4.247 13 C 0.511 3.489 14 O -0.551 6.551 15 C 0.134 3.866 16 H 0.078 0.922 17 C -0.150 4.150 18 C 0.155 3.845 19 N -0.602 5.602 20 C -0.224 4.224 21 H 0.078 0.922 22 C -0.010 4.010 23 N -0.920 5.920 24 Si 0.914 3.086 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.290 1.290 28 C 0.126 3.874 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.102 0.898 38 H 0.162 0.838 39 H 0.144 0.856 40 H 0.133 0.867 41 H 0.146 0.854 42 H 0.062 0.938 43 H 0.067 0.933 44 H 0.105 0.895 45 H 0.010 0.990 46 H 0.252 0.748 47 H 0.034 0.966 48 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.779 22.878 4.018 23.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.328 5.328 3 C 0.299 3.701 4 O -0.424 6.424 5 C -0.176 4.176 6 C -0.155 4.155 7 C -0.033 4.033 8 N -0.203 5.203 9 C 0.010 3.990 10 C -0.261 4.261 11 C -0.039 4.039 12 C -0.269 4.269 13 C 0.313 3.687 14 O -0.434 6.434 15 C 0.031 3.969 16 H 0.096 0.904 17 C -0.190 4.190 18 C 0.031 3.969 19 N -0.329 5.329 20 C -0.352 4.352 21 H 0.096 0.904 22 C -0.206 4.206 23 N -0.569 5.569 24 Si 0.745 3.255 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.217 1.217 28 C 0.000 4.000 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.113 0.887 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.111 0.889 37 H 0.120 0.880 38 H 0.180 0.820 39 H 0.162 0.838 40 H 0.151 0.849 41 H 0.164 0.836 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.123 0.877 45 H 0.028 0.972 46 H 0.062 0.938 47 H 0.052 0.948 48 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 3.022 22.391 4.545 23.046 hybrid contribution -0.628 -0.694 -0.391 1.015 sum 2.394 21.696 4.154 22.220 Atomic orbital electron populations 1.21930 0.79570 1.03900 1.01854 1.47871 1.07096 1.05699 1.72140 1.20429 0.87984 0.85161 0.76542 1.90683 1.13942 1.87517 1.50271 1.21574 0.99148 0.92343 1.04530 1.21636 0.98090 0.91066 1.04712 1.22104 0.91290 0.84774 1.05141 1.45579 1.38229 1.29668 1.06841 1.22027 0.93863 0.93438 0.89643 1.20664 1.04421 1.01435 0.99616 1.21444 0.94340 0.96093 0.91986 1.22140 1.03795 1.00804 1.00112 1.17191 0.83640 0.85010 0.82844 1.90971 1.59969 1.62917 1.29496 1.22033 0.93944 0.82244 0.98725 0.90368 1.23324 0.99759 1.00349 0.95552 1.21905 0.88955 0.92988 0.93080 1.44561 1.55257 1.33662 0.99435 1.19108 1.19849 1.04196 0.92032 0.90390 1.24799 1.00700 0.99556 0.95544 1.69824 1.46820 1.41329 0.98880 0.86002 0.79698 0.81835 0.77964 1.20518 1.21779 1.21747 1.21621 0.95703 0.92611 0.90043 0.92926 0.91622 0.88736 0.88623 0.88679 0.90218 0.90579 0.88859 0.87963 0.82018 0.83783 0.84901 0.83593 0.91883 0.91440 0.87749 0.97181 0.93764 0.94813 0.94809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.97 8.88 59.84 0.53 1.51 16 2 N -0.60 -9.64 2.98 -171.84 -0.51 -10.15 16 3 C 0.51 7.98 7.33 -10.99 -0.08 7.90 16 4 O -0.55 -10.42 15.32 5.55 0.09 -10.33 16 5 C -0.14 -1.44 4.18 -27.89 -0.12 -1.56 16 6 C -0.12 -1.24 4.83 -26.73 -0.13 -1.37 16 7 C 0.09 0.73 5.34 -4.04 -0.02 0.71 16 8 N -0.49 -4.54 2.58 -119.77 -0.31 -4.85 16 9 C 0.14 0.87 10.28 -16.84 -0.17 0.69 16 10 C -0.24 -1.35 10.01 -39.88 -0.40 -1.75 16 11 C -0.02 -0.11 10.10 -39.51 -0.40 -0.51 16 12 C -0.25 -2.32 9.99 -39.38 -0.39 -2.72 16 13 C 0.51 6.19 7.41 -15.44 -0.11 6.07 16 14 O -0.55 -8.82 16.64 4.87 0.08 -8.73 16 15 C 0.13 2.48 3.15 -66.09 -0.21 2.27 16 16 H 0.08 1.43 8.08 -51.93 -0.42 1.01 16 17 C -0.15 -3.07 6.56 -24.58 -0.16 -3.23 16 18 C 0.16 3.72 5.75 -2.53 -0.01 3.71 16 19 N -0.60 -14.77 3.05 -170.07 -0.52 -15.29 16 20 C -0.22 -5.99 10.27 -15.05 -0.15 -6.15 16 21 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 22 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 23 N -0.92 -26.21 10.09 55.49 0.56 -25.65 16 24 Si 0.91 21.52 29.55 -169.99 -5.02 16.50 16 25 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 26 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 27 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 28 C 0.13 2.55 6.04 -3.06 -0.02 2.53 16 29 H 0.05 0.64 8.04 -51.93 -0.42 0.22 16 30 H 0.07 0.71 6.25 -51.92 -0.32 0.39 16 31 H 0.09 1.63 6.32 -51.93 -0.33 1.31 16 32 H 0.10 0.82 7.41 -51.93 -0.38 0.43 16 33 H 0.09 0.87 8.11 -51.93 -0.42 0.45 16 34 H 0.08 1.09 8.10 -51.93 -0.42 0.67 16 35 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 36 H 0.09 0.47 8.01 -51.92 -0.42 0.06 16 37 H 0.10 0.94 7.38 -51.93 -0.38 0.56 16 38 H 0.16 0.51 8.04 -52.49 -0.42 0.09 16 39 H 0.14 0.45 8.06 -52.49 -0.42 0.03 16 40 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 41 H 0.15 1.24 8.06 -52.49 -0.42 0.82 16 42 H 0.06 1.28 7.35 -51.93 -0.38 0.90 16 43 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 44 H 0.10 2.86 5.87 -51.93 -0.31 2.55 16 45 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 46 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 47 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.03 0.65 5.95 -51.93 -0.31 0.34 16 LS Contribution 384.88 15.07 5.80 5.80 Total: -1.00 -35.17 384.88 -9.22 -44.39 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -7.44 Total: 0.58 kcal Atomic # 6 Polarization: 9.69 SS G_CDS: -1.95 Total: 7.74 kcal Atomic # 7 Polarization: -55.16 SS G_CDS: -0.78 Total: -55.94 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: 0.17 Total: -19.07 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.17 -9.22 -44.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481733939.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.824 kcal (2) G-P(sol) polarization free energy of solvation -35.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds