Wall clock time and date at job start Tue Mar 31 2020 17:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.34776 * 119.99992 * 2 1 4 4 O 1.21286 * 119.99902 * 180.27324 * 3 2 1 5 5 C 1.50696 * 120.00082 * 0.28010 * 3 2 1 6 6 C 1.52998 * 109.47007 * 179.97438 * 5 3 2 7 7 C 1.53003 * 109.47280 * 180.02562 * 6 5 3 8 8 N 1.46493 * 109.47447 * 180.02562 * 7 6 5 9 9 C 1.35766 * 119.62937 * 89.99955 * 8 7 6 10 10 C 1.35348 * 120.70480 * 179.97438 * 9 8 7 11 11 C 1.40200 * 119.94579 * 0.02562 * 10 9 8 12 12 C 1.36394 * 119.26755 * 0.02562 * 11 10 9 13 13 C 1.34662 * 119.62269 * 269.72881 * 8 7 6 14 14 O 1.22057 * 119.98642 * 359.97438 * 13 8 7 15 15 C 1.46504 * 120.00006 * 180.27985 * 2 1 3 16 16 H 1.08993 * 110.63993 * 230.35656 * 15 2 1 17 17 C 1.55158 * 110.71852 * 107.01828 * 15 2 1 18 18 C 1.54910 * 101.58155 * 277.13890 * 17 15 2 19 19 N 1.47419 * 104.83424 * 322.99343 * 18 17 15 20 20 C 1.36947 * 125.64934 * 204.09445 * 19 18 17 21 21 H 1.07996 * 119.99839 * 180.02562 * 20 19 18 22 22 C 1.38812 * 119.99832 * 0.03920 * 20 19 18 23 23 N 1.31613 * 120.00125 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99707 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47037 * 359.97438 * 24 22 20 26 26 H 1.48493 * 109.47028 * 119.99995 * 24 22 20 27 27 H 1.48498 * 109.46890 * 239.99861 * 24 22 20 28 28 C 1.47026 * 108.70591 * 24.12754 * 19 18 17 29 29 H 1.08999 * 109.47259 * 264.45763 * 1 2 3 30 30 H 1.09009 * 109.47166 * 24.45481 * 1 2 3 31 31 H 1.09002 * 109.47875 * 144.45552 * 1 2 3 32 32 H 1.08997 * 109.47428 * 299.99580 * 5 3 2 33 33 H 1.09001 * 109.47008 * 60.00229 * 5 3 2 34 34 H 1.09001 * 109.47751 * 299.99954 * 6 5 3 35 35 H 1.09004 * 109.47053 * 60.00297 * 6 5 3 36 36 H 1.09011 * 109.47061 * 300.00230 * 7 6 5 37 37 H 1.08996 * 109.47155 * 59.99919 * 7 6 5 38 38 H 1.07997 * 119.64504 * 359.97438 * 9 8 7 39 39 H 1.07998 * 120.02543 * 179.97438 * 10 9 8 40 40 H 1.07997 * 120.36520 * 179.97438 * 11 10 9 41 41 H 1.07996 * 120.34990 * 180.02562 * 12 11 10 42 42 H 1.08997 * 111.00928 * 35.21132 * 17 15 2 43 43 H 1.08996 * 111.00300 * 159.06800 * 17 15 2 44 44 H 1.08999 * 110.36822 * 204.15506 * 18 17 15 45 45 H 1.09004 * 110.46167 * 81.87839 * 18 17 15 46 46 H 0.96991 * 120.00388 * 180.02562 * 23 22 20 47 47 H 1.08995 * 109.88386 * 239.52846 * 28 19 18 48 48 H 1.08994 * 109.88393 * 118.35373 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3516 1.1672 -0.0050 5 6 1.3853 2.4723 0.0064 6 6 2.3796 3.6351 0.0057 7 6 1.6147 4.9602 0.0128 8 7 2.5666 6.0737 0.0115 9 6 2.9974 6.5871 -1.1692 10 6 3.8763 7.6161 -1.1959 11 6 4.3513 8.1620 0.0050 12 6 3.9182 7.6442 1.1902 13 6 3.0003 6.5800 1.1815 14 8 2.5997 6.1113 2.2349 15 6 2.1974 -1.2687 -0.0062 16 1 2.9531 -1.2799 0.7792 17 6 2.8397 -1.5250 -1.3952 18 6 1.6502 -2.1313 -2.1808 19 7 0.9339 -2.9641 -1.1977 20 6 0.1272 -4.0308 -1.4923 21 1 -0.3554 -4.5788 -0.6966 22 6 -0.0701 -4.4077 -2.8136 23 7 0.5178 -3.7396 -3.7833 24 14 -1.1711 -5.8622 -3.2155 25 1 -1.7090 -6.4385 -1.9570 26 1 -2.2954 -5.4098 -4.0736 27 1 -0.3835 -6.8951 -3.9354 28 6 1.2284 -2.4594 0.1515 29 1 -0.3634 -0.0993 1.0228 30 1 -0.3634 0.9355 -0.4255 31 1 -0.3635 -0.8362 -0.5974 32 1 0.7550 2.5323 -0.8808 33 1 0.7625 2.5278 0.8992 34 1 3.0097 3.5751 0.8930 35 1 3.0028 3.5798 -0.8869 36 1 0.9842 5.0206 -0.8745 37 1 0.9918 5.0154 0.9055 38 1 2.6349 6.1699 -2.0971 39 1 4.2120 8.0157 -2.1413 40 1 5.0530 8.9828 -0.0084 41 1 4.2724 8.0516 2.1255 42 1 3.1731 -0.5920 -1.8496 43 1 3.6617 -2.2368 -1.3201 44 1 2.0134 -2.7451 -3.0050 45 1 0.9988 -1.3416 -2.5553 46 1 0.3797 -4.0027 -4.7066 47 1 1.6977 -3.2430 0.7461 48 1 0.3082 -2.1273 0.6320 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481733939.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:04 Heat of formation + Delta-G solvation = -22.582250 kcal Electronic energy + Delta-G solvation = -28516.335176 eV Core-core repulsion = 24572.046776 eV Total energy + Delta-G solvation = -3944.288401 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.28787 -41.26601 -39.03154 -37.94229 -36.47925 -36.02809 -34.22907 -33.50833 -31.27988 -30.76339 -29.50855 -28.21128 -27.91902 -26.08809 -24.93407 -24.26564 -22.85130 -22.06969 -21.61028 -19.81309 -18.94672 -18.56794 -18.25479 -18.02796 -17.46345 -17.15932 -16.91985 -16.74932 -16.54477 -15.86153 -15.66232 -15.31586 -15.17317 -14.94321 -14.44067 -14.28600 -13.95553 -13.86330 -13.68773 -13.51326 -13.29828 -13.13088 -13.01342 -12.92133 -12.82876 -12.72578 -12.59379 -12.46644 -12.33800 -12.02422 -11.96908 -11.82368 -11.79658 -11.53856 -11.06978 -10.97122 -10.75886 -10.73682 -9.59383 -8.93640 -8.89638 -7.76625 -5.21326 -0.04165 0.95457 1.48588 1.49735 1.59618 1.65061 1.67853 2.06946 2.50096 2.72044 3.34622 3.45632 3.67838 3.68663 3.78498 3.81530 3.95820 4.00863 4.02752 4.15681 4.22218 4.25291 4.31062 4.36164 4.43943 4.53681 4.57917 4.58867 4.64074 4.67556 4.72778 4.91516 4.96795 5.00477 5.02163 5.09801 5.10106 5.18479 5.25287 5.43039 5.46736 5.57112 5.62958 5.70343 5.79248 6.14069 6.28766 6.47927 7.02221 7.10306 7.19706 7.76632 8.40956 9.25549 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.027317 B = 0.002068 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.745619 B =13536.898380 C =13781.810343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.600 5.600 3 C 0.505 3.495 4 O -0.587 6.587 5 C -0.125 4.125 6 C -0.106 4.106 7 C 0.091 3.909 8 N -0.494 5.494 9 C 0.132 3.868 10 C -0.236 4.236 11 C 0.005 3.995 12 C -0.288 4.288 13 C 0.491 3.509 14 O -0.613 6.613 15 C 0.143 3.857 16 H 0.083 0.917 17 C -0.138 4.138 18 C 0.169 3.831 19 N -0.618 5.618 20 C -0.232 4.232 21 H 0.085 0.915 22 C -0.066 4.066 23 N -0.949 5.949 24 Si 0.979 3.021 25 H -0.266 1.266 26 H -0.292 1.292 27 H -0.296 1.296 28 C 0.128 3.872 29 H 0.074 0.926 30 H 0.101 0.899 31 H 0.059 0.941 32 H 0.129 0.871 33 H 0.116 0.884 34 H 0.038 0.962 35 H 0.071 0.929 36 H 0.138 0.862 37 H 0.090 0.910 38 H 0.202 0.798 39 H 0.180 0.820 40 H 0.165 0.835 41 H 0.141 0.859 42 H 0.063 0.937 43 H 0.064 0.936 44 H 0.068 0.932 45 H -0.007 1.007 46 H 0.246 0.754 47 H 0.036 0.964 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.729 24.489 3.019 24.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.332 5.332 3 C 0.295 3.705 4 O -0.468 6.468 5 C -0.165 4.165 6 C -0.145 4.145 7 C -0.030 4.030 8 N -0.202 5.202 9 C 0.005 3.995 10 C -0.258 4.258 11 C -0.017 4.017 12 C -0.309 4.309 13 C 0.296 3.704 14 O -0.501 6.501 15 C 0.039 3.961 16 H 0.100 0.900 17 C -0.177 4.177 18 C 0.044 3.956 19 N -0.345 5.345 20 C -0.361 4.361 21 H 0.102 0.898 22 C -0.259 4.259 23 N -0.599 5.599 24 Si 0.808 3.192 25 H -0.190 1.190 26 H -0.219 1.219 27 H -0.223 1.223 28 C 0.003 3.997 29 H 0.092 0.908 30 H 0.120 0.880 31 H 0.078 0.922 32 H 0.147 0.853 33 H 0.134 0.866 34 H 0.057 0.943 35 H 0.090 0.910 36 H 0.156 0.844 37 H 0.108 0.892 38 H 0.218 0.782 39 H 0.197 0.803 40 H 0.182 0.818 41 H 0.159 0.841 42 H 0.081 0.919 43 H 0.083 0.917 44 H 0.086 0.914 45 H 0.011 0.989 46 H 0.056 0.944 47 H 0.054 0.946 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.961 24.025 3.543 24.364 hybrid contribution -0.230 -1.138 -0.154 1.172 sum 1.731 22.887 3.389 23.201 Atomic orbital electron populations 1.22032 0.77882 1.04373 1.02827 1.47969 1.08096 1.05006 1.72159 1.21313 0.87795 0.86304 0.75106 1.90666 1.15987 1.88142 1.51997 1.21613 0.98904 0.88963 1.07037 1.21490 0.97871 0.92658 1.02489 1.22158 0.90950 0.83173 1.06698 1.45612 1.38005 1.29528 1.07104 1.22792 0.93597 0.93407 0.89675 1.21194 1.03323 1.00673 1.00569 1.21866 0.93047 0.95603 0.91166 1.22131 1.05470 1.01852 1.01474 1.17642 0.84107 0.85656 0.83011 1.90915 1.62540 1.65126 1.31556 1.21784 0.93745 0.83253 0.97324 0.89951 1.23134 0.98322 0.99893 0.96387 1.21555 0.89628 0.91851 0.92609 1.44742 1.55053 1.33450 1.01231 1.19466 1.19702 1.04631 0.92311 0.89768 1.25605 1.02451 1.02230 0.95592 1.70062 1.48225 1.42791 0.98801 0.84988 0.77700 0.78595 0.77890 1.19031 1.21908 1.22335 1.21720 0.96774 0.93181 0.88074 0.90797 0.88025 0.92224 0.85265 0.86589 0.94298 0.90992 0.84379 0.89195 0.78155 0.80266 0.81780 0.84145 0.91876 0.91683 0.91376 0.98916 0.94409 0.94559 0.93032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.78 8.88 127.77 1.13 2.92 16 2 N -0.60 -18.51 2.98 -815.96 -2.43 -20.94 16 3 C 0.50 15.06 7.33 87.66 0.64 15.71 16 4 O -0.59 -22.34 15.32 -3.05 -0.05 -22.39 16 5 C -0.13 -2.33 4.18 29.85 0.12 -2.20 16 6 C -0.11 -2.14 4.83 30.59 0.15 -1.99 16 7 C 0.09 1.32 5.34 86.38 0.46 1.78 16 8 N -0.49 -8.45 2.58 -650.97 -1.68 -10.14 16 9 C 0.13 1.21 10.28 83.42 0.86 2.07 16 10 C -0.24 -1.77 10.01 22.08 0.22 -1.55 16 11 C 0.01 0.05 10.10 22.32 0.23 0.28 16 12 C -0.29 -5.52 9.99 22.40 0.22 -5.30 16 13 C 0.49 12.33 7.41 84.82 0.63 12.95 16 14 O -0.61 -21.17 16.64 -5.50 -0.09 -21.26 16 15 C 0.14 5.22 3.15 46.18 0.15 5.37 16 16 H 0.08 2.97 8.08 -2.39 -0.02 2.95 16 17 C -0.14 -5.67 6.56 31.99 0.21 -5.46 16 18 C 0.17 8.26 5.75 86.86 0.50 8.76 16 19 N -0.62 -30.46 3.05 -691.99 -2.11 -32.57 16 20 C -0.23 -12.45 10.27 84.03 0.86 -11.59 16 21 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 22 C -0.07 -3.64 5.49 84.86 0.47 -3.18 16 23 N -0.95 -55.28 10.09 21.65 0.22 -55.06 16 24 Si 0.98 44.40 29.55 68.60 2.03 46.43 16 25 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 26 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 27 H -0.30 -13.59 7.11 99.48 0.71 -12.88 16 28 C 0.13 5.05 6.04 86.73 0.52 5.57 16 29 H 0.07 1.56 8.04 -2.39 -0.02 1.54 16 30 H 0.10 1.80 6.25 -2.38 -0.01 1.79 16 31 H 0.06 1.97 6.32 -2.39 -0.02 1.96 16 32 H 0.13 1.60 7.41 -2.39 -0.02 1.58 16 33 H 0.12 1.75 8.11 -2.39 -0.02 1.73 16 34 H 0.04 1.10 8.10 -2.39 -0.02 1.08 16 35 H 0.07 1.49 8.10 -2.38 -0.02 1.47 16 36 H 0.14 0.76 8.01 -2.38 -0.02 0.74 16 37 H 0.09 1.58 7.38 -2.39 -0.02 1.56 16 38 H 0.20 0.20 8.04 -2.91 -0.02 0.18 16 39 H 0.18 0.13 8.06 -2.91 -0.02 0.11 16 40 H 0.16 0.68 8.06 -2.91 -0.02 0.65 16 41 H 0.14 2.64 8.06 -2.91 -0.02 2.62 16 42 H 0.06 2.58 7.35 -2.39 -0.02 2.56 16 43 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 44 H 0.07 3.87 5.87 -2.39 -0.01 3.86 16 45 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 46 H 0.25 13.96 8.31 -92.72 -0.77 13.19 16 47 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 48 H 0.05 1.89 5.95 -2.39 -0.01 1.87 16 Total: -1.00 -82.59 384.88 4.21 -78.38 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: 0.95 Total: 13.42 kcal Atomic # 6 Polarization: 16.77 SS G_CDS: 7.37 Total: 24.14 kcal Atomic # 7 Polarization: -112.71 SS G_CDS: -6.00 Total: -118.71 kcal Atomic # 8 Polarization: -43.51 SS G_CDS: -0.14 Total: -43.65 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -82.59 4.21 -78.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481733939.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.796 kcal (2) G-P(sol) polarization free energy of solvation -82.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds