Wall clock time and date at job start Tue Mar 31 2020 17:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35644 * 117.00177 * 2 1 4 4 C 1.39345 * 120.54240 * 359.97438 * 3 2 1 5 5 C 1.38298 * 118.44168 * 180.02562 * 4 3 2 6 6 C 1.38765 * 119.44903 * 359.97438 * 5 4 3 7 7 N 1.31384 * 121.06183 * 359.74697 * 6 5 4 8 8 C 1.32853 * 121.69687 * 0.52316 * 7 6 5 9 9 C 1.47830 * 119.78542 * 179.75305 * 8 7 6 10 10 O 1.21554 * 120.00332 * 172.14637 * 9 8 7 11 11 N 1.34776 * 119.99957 * 352.15018 * 9 8 7 12 12 C 1.46926 * 120.62854 * 352.14100 * 11 9 8 13 13 C 1.53193 * 108.77642 * 233.63602 * 12 11 9 14 14 C 1.53040 * 109.33693 * 305.34593 * 13 12 11 15 15 C 1.53112 * 109.50169 * 61.34854 * 14 13 12 16 16 H 1.09004 * 109.51073 * 58.63001 * 15 14 13 17 17 C 1.52995 * 109.48786 * 178.69681 * 15 14 13 18 18 C 1.53007 * 109.47040 * 184.85568 * 17 15 14 19 19 N 1.46502 * 109.46980 * 180.02562 * 18 17 15 20 20 C 1.36941 * 119.99590 * 179.97438 * 19 18 17 21 21 H 1.07993 * 120.00388 * 0.02562 * 20 19 18 22 22 C 1.38814 * 119.99651 * 180.02562 * 20 19 18 23 23 N 1.31623 * 120.00304 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 119.99941 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.47208 * 60.00327 * 24 22 20 26 26 H 1.48503 * 109.47245 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.47302 * 300.00253 * 24 22 20 28 28 C 1.46922 * 120.63376 * 172.17008 * 11 9 8 29 29 H 1.08991 * 109.46886 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.46567 * 299.99908 * 1 2 3 31 31 H 1.09001 * 109.46912 * 59.99817 * 1 2 3 32 32 H 1.07998 * 120.77615 * 0.04466 * 4 3 2 33 33 H 1.08003 * 120.27586 * 179.97438 * 5 4 3 34 34 H 1.07992 * 119.47204 * 179.97438 * 6 5 4 35 35 H 1.09001 * 109.58746 * 113.84498 * 12 11 9 36 36 H 1.09002 * 109.58852 * 353.41905 * 12 11 9 37 37 H 1.08998 * 109.50130 * 65.31559 * 13 12 11 38 38 H 1.09007 * 109.49830 * 185.38783 * 13 12 11 39 39 H 1.09003 * 109.46431 * 181.40258 * 14 13 12 40 40 H 1.09002 * 109.46192 * 301.36321 * 14 13 12 41 41 H 1.09002 * 109.47825 * 304.85860 * 17 15 14 42 42 H 1.09000 * 109.47356 * 64.85529 * 17 15 14 43 43 H 1.08998 * 109.46982 * 300.00007 * 18 17 15 44 44 H 1.08999 * 109.47076 * 60.00347 * 18 17 15 45 45 H 0.97002 * 120.00116 * 0.02562 * 19 18 17 46 46 H 0.96997 * 120.00703 * 179.97438 * 23 22 20 47 47 H 1.09006 * 109.58653 * 246.15598 * 28 11 9 48 48 H 1.09002 * 109.58408 * 6.57726 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2086 0.0000 4 6 1.2971 2.3844 -0.0005 5 6 1.9697 3.5928 -0.0011 6 6 3.3574 3.6012 -0.0005 7 7 4.0421 2.4798 0.0055 8 6 3.4411 1.2950 0.0009 9 6 4.2532 0.0597 0.0025 10 8 3.7151 -1.0212 0.1422 11 7 5.5902 0.1321 -0.1510 12 6 6.2368 1.4068 -0.4914 13 6 7.1040 1.2025 -1.7376 14 6 8.0798 0.0494 -1.4924 15 6 7.2940 -1.2389 -1.2334 16 1 6.6549 -1.4540 -2.0899 17 6 8.2698 -2.3979 -1.0206 18 6 7.4866 -3.7051 -0.8823 19 7 8.4210 -4.8148 -0.6779 20 6 7.9464 -6.0904 -0.5267 21 1 6.8834 -6.2784 -0.5586 22 6 8.8317 -7.1419 -0.3325 23 7 10.1272 -6.9129 -0.2941 24 14 8.1843 -8.8818 -0.1255 25 1 7.4222 -9.2739 -1.3383 26 1 9.3239 -9.8145 0.0654 27 1 7.2921 -8.9402 1.0601 28 6 6.4289 -1.0623 0.0184 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 0.2176 2.3527 -0.0002 33 1 1.4196 4.5222 -0.0019 34 1 3.8830 4.5445 -0.0013 35 1 6.8623 1.7327 0.3397 36 1 5.4754 2.1596 -0.6955 37 1 6.4667 0.9650 -2.5894 38 1 7.6636 2.1147 -1.9449 39 1 8.7148 -0.0816 -2.3687 40 1 8.7001 0.2766 -0.6254 41 1 8.9440 -2.4669 -1.8743 42 1 8.8487 -2.2236 -0.1137 43 1 6.8125 -3.6362 -0.0286 44 1 6.9078 -3.8795 -1.7893 45 1 9.3758 -4.6459 -0.6489 46 1 10.7459 -7.6474 -0.1580 47 1 7.0701 -0.9379 0.8911 48 1 5.7943 -1.9386 0.1506 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481990575.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:46 Heat of formation + Delta-G solvation = -9.114852 kcal Electronic energy + Delta-G solvation = -28784.735800 eV Core-core repulsion = 24841.031389 eV Total energy + Delta-G solvation = -3943.704411 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.41356 -39.68910 -38.56309 -37.53980 -35.20076 -33.59674 -32.59529 -31.98093 -31.22882 -30.46050 -27.93072 -27.33745 -26.10727 -24.14031 -23.99908 -23.25814 -22.38000 -20.92744 -20.44647 -19.54970 -18.40579 -17.76832 -17.17813 -16.86472 -16.37846 -15.96391 -15.67412 -15.24843 -14.84568 -14.73917 -14.64235 -14.30551 -13.86682 -13.81769 -13.63702 -13.42023 -13.31905 -13.01482 -12.85790 -12.80627 -12.52481 -12.08271 -11.90228 -11.80994 -11.24380 -11.06764 -10.99241 -10.89548 -10.74718 -10.53924 -10.33953 -10.29533 -10.14940 -10.08466 -9.82045 -9.55824 -9.15130 -8.90284 -8.74298 -8.42274 -6.79356 -5.65579 -2.93289 0.27436 0.74339 2.62638 2.73293 2.98474 3.51031 3.52636 3.55761 3.57853 3.84409 4.08940 4.23238 4.46071 4.66844 4.67658 4.72462 4.73839 4.80506 4.95116 5.01179 5.06924 5.14515 5.19510 5.39375 5.42068 5.47760 5.60779 5.66285 5.69324 5.80650 5.84928 5.90531 5.91816 6.06620 6.12985 6.23108 6.26829 6.37918 6.45335 6.49422 6.58467 6.72727 6.83478 7.02574 7.05645 7.25480 7.52557 7.81624 8.23824 8.54131 9.64643 10.24272 10.59214 11.57646 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015283 B = 0.002564 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.614363 B =10919.625903 C =12552.780643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.271 6.271 3 C 0.139 3.861 4 C -0.174 4.174 5 C -0.108 4.108 6 C 0.050 3.950 7 N -0.410 5.410 8 C 0.049 3.951 9 C 0.567 3.433 10 O -0.513 6.513 11 N -0.592 5.592 12 C 0.071 3.929 13 C -0.135 4.135 14 C -0.116 4.116 15 C -0.094 4.094 16 H 0.073 0.927 17 C -0.118 4.118 18 C 0.150 3.850 19 N -0.734 5.734 20 C -0.235 4.235 21 H 0.070 0.930 22 C -0.017 4.017 23 N -0.937 5.937 24 Si 0.907 3.093 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.286 1.286 28 C 0.114 3.886 29 H 0.108 0.892 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.147 0.853 33 H 0.143 0.857 34 H 0.167 0.833 35 H 0.061 0.939 36 H 0.145 0.855 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.021 0.979 44 H 0.017 0.983 45 H 0.383 0.617 46 H 0.254 0.746 47 H 0.068 0.932 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.957 29.384 -0.736 34.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.180 6.180 3 C 0.088 3.912 4 C -0.201 4.201 5 C -0.128 4.128 6 C -0.110 4.110 7 N -0.122 5.122 8 C -0.090 4.090 9 C 0.353 3.647 10 O -0.388 6.388 11 N -0.324 5.324 12 C -0.052 4.052 13 C -0.173 4.173 14 C -0.154 4.154 15 C -0.114 4.114 16 H 0.091 0.909 17 C -0.156 4.156 18 C 0.023 3.977 19 N -0.378 5.378 20 C -0.366 4.366 21 H 0.088 0.912 22 C -0.213 4.213 23 N -0.586 5.586 24 Si 0.738 3.262 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.213 1.213 28 C -0.008 4.008 29 H 0.126 0.874 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.164 0.836 33 H 0.161 0.839 34 H 0.184 0.816 35 H 0.079 0.921 36 H 0.161 0.839 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.039 0.961 44 H 0.035 0.965 45 H 0.216 0.784 46 H 0.064 0.936 47 H 0.087 0.913 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -17.394 28.400 -0.622 33.309 hybrid contribution -1.040 -0.687 0.101 1.250 sum -18.433 27.713 -0.521 33.288 Atomic orbital electron populations 1.23250 0.78301 1.04992 1.01129 1.86456 1.21081 1.24349 1.86091 1.20033 0.92263 0.85914 0.93009 1.21790 1.01207 0.91801 1.05262 1.22180 0.95726 0.98415 0.96453 1.22896 0.91608 0.96768 0.99708 1.67657 1.37430 0.97667 1.09453 1.20808 0.88736 0.92882 1.06533 1.17622 0.81939 0.87089 0.78069 1.90864 1.70970 1.27789 1.49127 1.47922 1.05321 1.11038 1.68160 1.23000 0.99013 0.86764 0.96391 1.21963 0.98181 0.98786 0.98393 1.21623 0.97586 0.94277 1.01866 1.21450 0.96937 0.94980 0.98041 0.90906 1.21729 0.97803 0.94025 1.02079 1.20719 0.92746 0.86631 0.97596 1.42378 1.05191 1.02743 1.87504 1.19233 0.92212 0.84343 1.40844 0.91246 1.24733 0.95332 0.97978 1.03224 1.69654 1.00569 1.30976 1.57387 0.86257 0.77320 0.84639 0.77956 1.21327 1.21742 1.21284 1.21856 0.93418 0.88036 0.97488 0.87396 0.92441 0.92464 0.83570 0.83933 0.81613 0.92065 0.83852 0.92084 0.91137 0.91778 0.91818 0.91631 0.91829 0.96122 0.96513 0.78383 0.93590 0.91330 0.88335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.83 101.05 0.99 1.12 16 2 O -0.27 -3.27 8.59 -40.45 -0.35 -3.62 16 3 C 0.14 1.51 6.70 -38.55 -0.26 1.26 16 4 C -0.17 -1.19 9.13 -39.15 -0.36 -1.55 16 5 C -0.11 -0.56 10.10 -39.36 -0.40 -0.96 16 6 C 0.05 0.32 11.17 -17.55 -0.20 0.12 16 7 N -0.41 -4.04 6.08 -9.71 -0.06 -4.10 16 8 C 0.05 0.61 6.61 -82.88 -0.55 0.06 16 9 C 0.57 8.90 7.64 -12.34 -0.09 8.80 16 10 O -0.51 -9.83 14.61 -16.50 -0.24 -10.07 16 11 N -0.59 -8.42 2.97 -173.89 -0.52 -8.93 16 12 C 0.07 0.79 5.90 -3.71 -0.02 0.76 16 13 C -0.13 -1.41 6.08 -26.61 -0.16 -1.57 16 14 C -0.12 -1.38 5.17 -26.65 -0.14 -1.52 16 15 C -0.09 -1.39 2.34 -90.47 -0.21 -1.60 16 16 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 17 C -0.12 -2.05 4.80 -26.73 -0.13 -2.18 16 18 C 0.15 3.32 6.02 -4.04 -0.02 3.30 16 19 N -0.73 -20.01 5.60 -59.90 -0.34 -20.35 16 20 C -0.23 -7.03 9.99 -15.06 -0.15 -7.18 16 21 H 0.07 2.03 7.83 -52.49 -0.41 1.62 16 22 C -0.02 -0.52 5.50 -17.43 -0.10 -0.62 16 23 N -0.94 -29.56 13.06 55.49 0.72 -28.84 16 24 Si 0.91 23.53 29.55 -169.99 -5.02 18.51 16 25 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 26 H -0.29 -7.54 7.11 56.52 0.40 -7.13 16 27 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 28 C 0.11 1.75 5.33 -3.72 -0.02 1.73 16 29 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.27 7.70 -51.93 -0.40 -0.13 16 31 H 0.06 0.27 7.70 -51.93 -0.40 -0.13 16 32 H 0.15 0.58 6.46 -52.49 -0.34 0.25 16 33 H 0.14 0.26 8.06 -52.48 -0.42 -0.16 16 34 H 0.17 0.52 8.06 -52.49 -0.42 0.09 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.15 1.49 3.96 -87.50 -0.35 1.14 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.02 0.47 6.70 -51.93 -0.35 0.12 16 44 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.38 10.80 7.67 -40.82 -0.31 10.48 16 46 H 0.25 7.74 8.31 -40.82 -0.34 7.40 16 47 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 48 H 0.10 1.78 5.72 -51.93 -0.30 1.48 16 LS Contribution 381.83 15.07 5.75 5.75 Total: -1.00 -36.93 381.83 -9.34 -46.27 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -7.48 Total: 5.39 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: -1.81 Total: -0.01 kcal Atomic # 7 Polarization: -62.03 SS G_CDS: -0.19 Total: -62.22 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: -0.59 Total: -13.69 kcal Atomic # 14 Polarization: 23.53 SS G_CDS: -5.02 Total: 18.51 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.93 -9.34 -46.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481990575.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.155 kcal (2) G-P(sol) polarization free energy of solvation -36.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds