Wall clock time and date at job start Tue Mar 31 2020 17:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35752 * 117.00141 * 2 1 4 4 C 1.39216 * 120.81180 * 0.02562 * 3 2 1 5 5 C 1.38315 * 119.28566 * 179.97438 * 4 3 2 6 6 N 1.31614 * 120.97264 * 359.97438 * 5 4 3 7 7 C 1.32795 * 121.78031 * 0.02562 * 6 5 4 8 8 C 1.48186 * 119.69611 * 179.97438 * 7 6 5 9 9 O 1.21509 * 120.00039 * 158.55847 * 8 7 6 10 10 N 1.34780 * 119.99597 * 338.55084 * 8 7 6 11 11 C 1.46924 * 120.63325 * 359.97438 * 10 8 7 12 12 C 1.52755 * 109.00706 * 233.58221 * 11 10 8 13 13 C 1.53043 * 109.38488 * 305.58845 * 12 11 10 14 14 C 1.52998 * 109.44836 * 181.25725 * 13 12 11 15 15 C 1.52995 * 109.47406 * 64.93957 * 14 13 12 16 16 N 1.46500 * 109.47232 * 179.97438 * 15 14 13 17 17 C 1.36940 * 120.00351 * 179.97438 * 16 15 14 18 18 H 1.08000 * 119.99642 * 0.02562 * 17 16 15 19 19 C 1.38807 * 120.00264 * 180.02562 * 17 16 15 20 20 N 1.31618 * 120.00233 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99877 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47609 * 90.00056 * 21 19 17 23 23 H 1.48500 * 109.46998 * 209.99800 * 21 19 17 24 24 H 1.48505 * 109.47477 * 329.99427 * 21 19 17 25 25 C 1.53036 * 109.53903 * 61.24178 * 13 12 11 26 26 C 1.46928 * 120.62540 * 180.26983 * 10 8 7 27 27 C 1.39098 * 120.60647 * 359.97438 * 7 6 5 28 28 H 1.08996 * 109.47473 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47101 * 299.99871 * 1 2 3 30 30 H 1.09000 * 109.47756 * 59.99184 * 1 2 3 31 31 H 1.07992 * 120.35461 * 359.94801 * 4 3 2 32 32 H 1.08004 * 119.51241 * 180.02562 * 5 4 3 33 33 H 1.08993 * 109.58591 * 353.41626 * 11 10 8 34 34 H 1.08998 * 109.58364 * 113.84115 * 11 10 8 35 35 H 1.09006 * 109.56564 * 185.55313 * 12 11 10 36 36 H 1.09000 * 109.36482 * 65.49808 * 12 11 10 37 37 H 1.09001 * 109.45936 * 301.21893 * 13 12 11 38 38 H 1.09000 * 109.46946 * 184.93842 * 14 13 12 39 39 H 1.08997 * 109.47066 * 304.93434 * 14 13 12 40 40 H 1.09000 * 109.46974 * 299.99868 * 15 14 13 41 41 H 1.09001 * 109.47151 * 60.00129 * 15 14 13 42 42 H 0.97001 * 119.99879 * 0.02562 * 16 15 14 43 43 H 0.96993 * 120.00535 * 179.97438 * 20 19 17 44 44 H 1.09000 * 109.50141 * 178.68534 * 25 13 12 45 45 H 1.09005 * 109.52210 * 58.59992 * 25 13 12 46 46 H 1.08998 * 109.58913 * 246.16042 * 26 10 8 47 47 H 1.09002 * 109.58938 * 6.44302 * 26 10 8 48 48 H 1.08007 * 120.51042 * 179.97438 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 1.3037 2.3878 0.0005 5 6 1.9642 3.6030 0.0011 6 7 3.2792 3.6591 0.0016 7 6 4.0261 2.5611 0.0011 8 6 5.5033 2.6781 0.0011 9 8 6.1863 1.7496 0.3854 10 7 6.0892 3.8146 -0.4253 11 6 5.2768 4.9457 -0.8935 12 6 5.7496 5.3546 -2.2873 13 6 7.2541 5.6329 -2.2519 14 6 7.7236 6.0729 -3.6400 15 6 7.0714 7.4095 -3.9991 16 7 7.5214 7.8311 -5.3280 17 6 7.0664 9.0061 -5.8643 18 1 6.3760 9.6222 -5.3073 19 6 7.4923 9.4052 -7.1236 20 7 8.3340 8.6546 -7.8022 21 14 6.8721 11.0084 -7.8547 22 1 7.7846 12.1145 -7.4683 23 1 6.8314 10.8945 -9.3347 24 1 5.5072 11.2909 -7.3423 25 6 8.0003 4.3617 -1.8405 26 6 7.5528 3.9434 -0.4367 27 6 3.4345 1.3022 0.0006 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 0.2243 2.3532 0.0001 32 1 1.3925 4.5193 0.0019 33 1 4.2288 4.6495 -0.9370 34 1 5.3929 5.7866 -0.2099 35 1 5.2206 6.2538 -2.6030 36 1 5.5457 4.5464 -2.9897 37 1 7.4601 6.4243 -1.5312 38 1 8.8076 6.1866 -3.6378 39 1 7.4387 5.3204 -4.3753 40 1 5.9873 7.2959 -4.0013 41 1 7.3564 8.1620 -3.2638 42 1 8.1411 7.2775 -5.8284 43 1 8.6314 8.9333 -8.6824 44 1 9.0732 4.5542 -1.8381 45 1 7.7756 3.5626 -2.5470 46 1 7.8586 4.7009 0.2850 47 1 8.0059 2.9868 -0.1764 48 1 4.0435 0.4102 -0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482004731.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:43:05 Heat of formation + Delta-G solvation = -15.979356 kcal Electronic energy + Delta-G solvation = -28153.305680 eV Core-core repulsion = 24209.303602 eV Total energy + Delta-G solvation = -3944.002078 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.42444 -40.10056 -38.61472 -37.83645 -35.29476 -33.58441 -32.24548 -32.10565 -31.02941 -30.80699 -28.49312 -28.11828 -25.59189 -24.21119 -23.90284 -23.20056 -22.67975 -21.27851 -20.41672 -19.69697 -18.38346 -17.85274 -17.00793 -16.72471 -16.45487 -16.21606 -16.00422 -15.55416 -15.13749 -14.72753 -14.56702 -14.37626 -14.19266 -14.03214 -13.80181 -13.62724 -13.40750 -13.06467 -12.90863 -12.79634 -12.60161 -12.23232 -12.03891 -11.85810 -11.24091 -11.18348 -11.09193 -10.96275 -10.76803 -10.62624 -10.46205 -10.26308 -10.19339 -9.87729 -9.75053 -9.62873 -9.53289 -9.13537 -8.81965 -8.69001 -6.86402 -5.72458 -3.00666 0.23344 0.77748 2.36561 2.47416 2.89555 3.38306 3.45644 3.50263 3.52317 3.75526 4.07914 4.28541 4.48883 4.55510 4.58825 4.61423 4.62182 4.88407 4.89044 4.91067 4.97553 5.13703 5.16443 5.27997 5.34705 5.49398 5.51935 5.56369 5.60520 5.76628 5.81133 5.81626 5.88484 5.97429 6.08350 6.16941 6.21010 6.28219 6.44583 6.48717 6.55338 6.56642 6.63569 6.94423 6.99589 7.19178 7.34588 7.73236 7.93654 8.46955 9.57448 10.17610 10.51802 11.50686 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015042 B = 0.002181 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.002904 B =12834.474531 C =14071.654234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.307 6.307 3 C 0.166 3.834 4 C -0.244 4.244 5 C 0.133 3.867 6 N -0.471 5.471 7 C 0.121 3.879 8 C 0.570 3.430 9 O -0.538 6.538 10 N -0.583 5.583 11 C 0.073 3.927 12 C -0.133 4.133 13 C -0.084 4.084 14 C -0.121 4.121 15 C 0.153 3.847 16 N -0.735 5.735 17 C -0.237 4.237 18 H 0.070 0.930 19 C -0.017 4.017 20 N -0.935 5.935 21 Si 0.907 3.093 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.282 1.282 25 C -0.128 4.128 26 C 0.109 3.891 27 C -0.145 4.145 28 H 0.106 0.894 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.145 0.855 32 H 0.169 0.831 33 H 0.141 0.859 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.020 0.980 41 H 0.016 0.984 42 H 0.383 0.617 43 H 0.254 0.746 44 H 0.076 0.924 45 H 0.066 0.934 46 H 0.070 0.930 47 H 0.091 0.909 48 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.824 -16.679 20.204 30.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.218 6.218 3 C 0.112 3.888 4 C -0.265 4.265 5 C -0.025 4.025 6 N -0.187 5.187 7 C -0.016 4.016 8 C 0.356 3.644 9 O -0.415 6.415 10 N -0.314 5.314 11 C -0.048 4.048 12 C -0.171 4.171 13 C -0.103 4.103 14 C -0.158 4.158 15 C 0.025 3.975 16 N -0.379 5.379 17 C -0.368 4.368 18 H 0.088 0.912 19 C -0.213 4.213 20 N -0.584 5.584 21 Si 0.738 3.262 22 H -0.218 1.218 23 H -0.218 1.218 24 H -0.208 1.208 25 C -0.166 4.166 26 C -0.013 4.013 27 C -0.166 4.166 28 H 0.124 0.876 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.162 0.838 32 H 0.186 0.814 33 H 0.157 0.843 34 H 0.085 0.915 35 H 0.102 0.898 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.037 0.963 41 H 0.034 0.966 42 H 0.216 0.784 43 H 0.064 0.936 44 H 0.095 0.905 45 H 0.085 0.915 46 H 0.088 0.912 47 H 0.109 0.891 48 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -15.039 -16.452 20.392 30.210 hybrid contribution -0.825 0.187 -0.767 1.142 sum -15.864 -16.265 19.624 30.022 Atomic orbital electron populations 1.23200 0.77330 1.04741 1.01846 1.86104 1.22206 1.25902 1.87605 1.19213 0.92081 0.84942 0.92579 1.22409 1.01932 0.93107 1.09008 1.22780 0.89919 0.97482 0.92324 1.67673 1.06903 1.29818 1.14280 1.20959 0.94345 0.88727 0.97525 1.17792 0.85710 0.82505 0.78354 1.90783 1.63659 1.38512 1.48527 1.47989 1.07408 1.14480 1.61551 1.22885 0.99115 0.88026 0.94816 1.22020 0.96346 1.02232 0.96520 1.21110 0.94686 0.96583 0.97898 1.21756 1.00572 0.98357 0.95154 1.20697 0.96103 0.92410 0.88244 1.42403 1.55345 1.24802 1.15355 1.19245 1.21284 0.97477 0.98808 0.91234 1.24754 1.00150 0.98958 0.97430 1.69661 1.36712 1.38510 1.13478 0.86182 0.78231 0.83449 0.78300 1.21758 1.21805 1.20792 1.21972 1.00488 0.98331 0.95830 1.21722 0.79054 1.02787 0.97723 1.21336 0.92052 0.99506 1.03742 0.87576 0.92130 0.92043 0.83754 0.81378 0.84284 0.91459 0.89832 0.91989 0.91030 0.92011 0.92143 0.96263 0.96644 0.78380 0.93571 0.90495 0.91542 0.91162 0.89102 0.82797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.08 9.84 101.05 0.99 1.08 16 2 O -0.31 -2.38 10.51 -18.96 -0.20 -2.58 16 3 C 0.17 1.41 6.73 -38.85 -0.26 1.15 16 4 C -0.24 -1.56 9.12 -39.19 -0.36 -1.92 16 5 C 0.13 0.94 11.17 -17.62 -0.20 0.74 16 6 N -0.47 -4.66 6.35 -9.87 -0.06 -4.73 16 7 C 0.12 1.38 6.46 -83.05 -0.54 0.84 16 8 C 0.57 7.63 7.62 -12.17 -0.09 7.54 16 9 O -0.54 -8.46 15.93 5.36 0.09 -8.38 16 10 N -0.58 -7.15 2.98 -174.04 -0.52 -7.67 16 11 C 0.07 0.82 5.96 -3.94 -0.02 0.80 16 12 C -0.13 -1.66 5.13 -26.83 -0.14 -1.79 16 13 C -0.08 -1.09 2.15 -90.58 -0.19 -1.28 16 14 C -0.12 -1.98 4.80 -26.73 -0.13 -2.11 16 15 C 0.15 3.12 6.02 -4.04 -0.02 3.09 16 16 N -0.74 -19.23 5.60 -59.91 -0.34 -19.57 16 17 C -0.24 -6.79 9.99 -15.06 -0.15 -6.95 16 18 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 19 C -0.02 -0.51 5.50 -17.43 -0.10 -0.60 16 20 N -0.93 -28.86 13.06 55.49 0.72 -28.14 16 21 Si 0.91 22.72 29.55 -169.99 -5.02 17.70 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 23 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 25 C -0.13 -1.50 5.36 -26.63 -0.14 -1.64 16 26 C 0.11 1.25 6.43 -3.72 -0.02 1.22 16 27 C -0.14 -1.51 9.59 -38.89 -0.37 -1.89 16 28 H 0.11 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.06 0.14 7.71 -51.93 -0.40 -0.26 16 30 H 0.06 0.15 7.71 -51.93 -0.40 -0.25 16 31 H 0.14 0.49 6.45 -52.49 -0.34 0.15 16 32 H 0.17 0.67 8.06 -52.48 -0.42 0.24 16 33 H 0.14 1.52 3.97 -79.60 -0.32 1.20 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 1.08 6.50 -51.93 -0.34 0.74 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.02 0.39 6.53 -51.93 -0.34 0.06 16 41 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.38 10.53 7.67 -40.82 -0.31 10.22 16 43 H 0.25 7.57 8.31 -40.82 -0.34 7.24 16 44 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.09 1.09 7.00 -51.93 -0.36 0.73 16 48 H 0.15 1.63 7.79 -52.48 -0.41 1.22 16 LS Contribution 384.12 15.07 5.79 5.79 Total: -1.00 -34.78 384.12 -8.70 -43.48 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -7.41 Total: 5.80 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: -1.75 Total: -1.71 kcal Atomic # 7 Polarization: -59.91 SS G_CDS: -0.19 Total: -60.10 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: -0.11 Total: -10.96 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.78 -8.70 -43.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482004731.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.497 kcal (2) G-P(sol) polarization free energy of solvation -34.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds