Wall clock time and date at job start Tue Mar 31 2020 17:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35752 * 117.00141 * 2 1 4 4 C 1.39216 * 120.81180 * 0.02562 * 3 2 1 5 5 C 1.38315 * 119.28566 * 179.97438 * 4 3 2 6 6 N 1.31614 * 120.97264 * 359.97438 * 5 4 3 7 7 C 1.32795 * 121.78031 * 0.02562 * 6 5 4 8 8 C 1.48186 * 119.69611 * 179.97438 * 7 6 5 9 9 O 1.21509 * 120.00039 * 158.55847 * 8 7 6 10 10 N 1.34780 * 119.99597 * 338.55084 * 8 7 6 11 11 C 1.46924 * 120.63325 * 359.97438 * 10 8 7 12 12 C 1.52755 * 109.00706 * 233.58221 * 11 10 8 13 13 C 1.53043 * 109.38488 * 305.58845 * 12 11 10 14 14 C 1.52998 * 109.44836 * 181.25725 * 13 12 11 15 15 C 1.52995 * 109.47406 * 64.93957 * 14 13 12 16 16 N 1.46500 * 109.47232 * 179.97438 * 15 14 13 17 17 C 1.36940 * 120.00351 * 179.97438 * 16 15 14 18 18 H 1.08000 * 119.99642 * 0.02562 * 17 16 15 19 19 C 1.38807 * 120.00264 * 180.02562 * 17 16 15 20 20 N 1.31618 * 120.00233 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99877 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47609 * 90.00056 * 21 19 17 23 23 H 1.48500 * 109.46998 * 209.99800 * 21 19 17 24 24 H 1.48505 * 109.47477 * 329.99427 * 21 19 17 25 25 C 1.53036 * 109.53903 * 61.24178 * 13 12 11 26 26 C 1.46928 * 120.62540 * 180.26983 * 10 8 7 27 27 C 1.39098 * 120.60647 * 359.97438 * 7 6 5 28 28 H 1.08996 * 109.47473 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47101 * 299.99871 * 1 2 3 30 30 H 1.09000 * 109.47756 * 59.99184 * 1 2 3 31 31 H 1.07992 * 120.35461 * 359.94801 * 4 3 2 32 32 H 1.08004 * 119.51241 * 180.02562 * 5 4 3 33 33 H 1.08993 * 109.58591 * 353.41626 * 11 10 8 34 34 H 1.08998 * 109.58364 * 113.84115 * 11 10 8 35 35 H 1.09006 * 109.56564 * 185.55313 * 12 11 10 36 36 H 1.09000 * 109.36482 * 65.49808 * 12 11 10 37 37 H 1.09001 * 109.45936 * 301.21893 * 13 12 11 38 38 H 1.09000 * 109.46946 * 184.93842 * 14 13 12 39 39 H 1.08997 * 109.47066 * 304.93434 * 14 13 12 40 40 H 1.09000 * 109.46974 * 299.99868 * 15 14 13 41 41 H 1.09001 * 109.47151 * 60.00129 * 15 14 13 42 42 H 0.97001 * 119.99879 * 0.02562 * 16 15 14 43 43 H 0.96993 * 120.00535 * 179.97438 * 20 19 17 44 44 H 1.09000 * 109.50141 * 178.68534 * 25 13 12 45 45 H 1.09005 * 109.52210 * 58.59992 * 25 13 12 46 46 H 1.08998 * 109.58913 * 246.16042 * 26 10 8 47 47 H 1.09002 * 109.58938 * 6.44302 * 26 10 8 48 48 H 1.08007 * 120.51042 * 179.97438 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 1.3037 2.3878 0.0005 5 6 1.9642 3.6030 0.0011 6 7 3.2792 3.6591 0.0016 7 6 4.0261 2.5611 0.0011 8 6 5.5033 2.6781 0.0011 9 8 6.1863 1.7496 0.3854 10 7 6.0892 3.8146 -0.4253 11 6 5.2768 4.9457 -0.8935 12 6 5.7496 5.3546 -2.2873 13 6 7.2541 5.6329 -2.2519 14 6 7.7236 6.0729 -3.6400 15 6 7.0714 7.4095 -3.9991 16 7 7.5214 7.8311 -5.3280 17 6 7.0664 9.0061 -5.8643 18 1 6.3760 9.6222 -5.3073 19 6 7.4923 9.4052 -7.1236 20 7 8.3340 8.6546 -7.8022 21 14 6.8721 11.0084 -7.8547 22 1 7.7846 12.1145 -7.4683 23 1 6.8314 10.8945 -9.3347 24 1 5.5072 11.2909 -7.3423 25 6 8.0003 4.3617 -1.8405 26 6 7.5528 3.9434 -0.4367 27 6 3.4345 1.3022 0.0006 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 0.2243 2.3532 0.0001 32 1 1.3925 4.5193 0.0019 33 1 4.2288 4.6495 -0.9370 34 1 5.3929 5.7866 -0.2099 35 1 5.2206 6.2538 -2.6030 36 1 5.5457 4.5464 -2.9897 37 1 7.4601 6.4243 -1.5312 38 1 8.8076 6.1866 -3.6378 39 1 7.4387 5.3204 -4.3753 40 1 5.9873 7.2959 -4.0013 41 1 7.3564 8.1620 -3.2638 42 1 8.1411 7.2775 -5.8284 43 1 8.6314 8.9333 -8.6824 44 1 9.0732 4.5542 -1.8381 45 1 7.7756 3.5626 -2.5470 46 1 7.8586 4.7009 0.2850 47 1 8.0059 2.9868 -0.1764 48 1 4.0435 0.4102 -0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482004731.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:43:04 Heat of formation + Delta-G solvation = -38.567227 kcal Electronic energy + Delta-G solvation = -28154.285163 eV Core-core repulsion = 24209.303602 eV Total energy + Delta-G solvation = -3944.981561 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.14802 -40.91071 -39.31762 -38.87034 -36.90099 -35.08831 -33.29357 -32.76504 -32.59502 -31.70695 -29.93145 -28.57222 -26.86930 -25.48256 -24.64120 -24.20452 -24.00174 -22.51320 -21.59548 -20.60496 -19.20343 -19.06379 -18.53797 -17.41109 -17.12761 -16.93033 -16.76360 -16.64413 -16.44707 -15.87603 -15.66165 -15.46495 -15.35865 -15.05430 -14.92450 -14.81894 -14.65721 -14.17914 -14.11547 -13.86644 -13.40957 -13.15960 -13.03862 -12.83250 -12.56378 -12.49842 -12.33050 -12.27457 -12.13177 -12.10278 -11.97269 -11.64513 -11.46673 -11.42395 -11.18438 -10.88012 -10.40698 -10.22758 -9.85219 -9.67412 -8.98296 -7.94404 -5.23590 -0.47281 0.15458 1.47565 1.50088 1.55351 1.58520 1.74433 2.20916 2.56972 2.67004 2.99301 3.39041 3.56137 3.65977 3.70666 3.85003 3.89441 3.94999 4.03238 4.20125 4.24314 4.32137 4.37771 4.38032 4.44935 4.46446 4.59365 4.62018 4.65979 4.69346 4.75742 4.81757 4.89067 4.92547 4.99277 5.04227 5.09644 5.13571 5.21729 5.29961 5.36455 5.47650 5.50206 5.57030 5.71637 6.12531 6.27189 6.28247 6.63097 6.98781 7.33488 8.11176 8.33521 9.29499 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015042 B = 0.002181 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.002904 B =12834.474531 C =14071.654234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.327 6.327 3 C 0.161 3.839 4 C -0.227 4.227 5 C 0.132 3.868 6 N -0.484 5.484 7 C 0.101 3.899 8 C 0.564 3.436 9 O -0.573 6.573 10 N -0.584 5.584 11 C 0.079 3.921 12 C -0.128 4.128 13 C -0.075 4.075 14 C -0.108 4.108 15 C 0.152 3.848 16 N -0.751 5.751 17 C -0.245 4.245 18 H 0.077 0.923 19 C -0.081 4.081 20 N -0.972 5.972 21 Si 0.977 3.023 22 H -0.286 1.286 23 H -0.295 1.295 24 H -0.267 1.267 25 C -0.121 4.121 26 C 0.109 3.891 27 C -0.162 4.162 28 H 0.120 0.880 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.182 0.818 32 H 0.206 0.794 33 H 0.148 0.852 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.049 0.951 37 H 0.082 0.918 38 H 0.057 0.943 39 H 0.049 0.951 40 H 0.026 0.974 41 H 0.019 0.981 42 H 0.372 0.628 43 H 0.251 0.749 44 H 0.088 0.912 45 H 0.054 0.946 46 H 0.087 0.913 47 H 0.082 0.918 48 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.474 -15.585 21.331 32.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.239 6.239 3 C 0.107 3.893 4 C -0.247 4.247 5 C -0.025 4.025 6 N -0.200 5.200 7 C -0.034 4.034 8 C 0.351 3.649 9 O -0.453 6.453 10 N -0.314 5.314 11 C -0.042 4.042 12 C -0.166 4.166 13 C -0.094 4.094 14 C -0.146 4.146 15 C 0.026 3.974 16 N -0.393 5.393 17 C -0.376 4.376 18 H 0.095 0.905 19 C -0.273 4.273 20 N -0.623 5.623 21 Si 0.805 3.195 22 H -0.213 1.213 23 H -0.222 1.222 24 H -0.192 1.192 25 C -0.159 4.159 26 C -0.013 4.013 27 C -0.185 4.185 28 H 0.139 0.861 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.199 0.801 32 H 0.222 0.778 33 H 0.164 0.836 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.068 0.932 37 H 0.100 0.900 38 H 0.076 0.924 39 H 0.068 0.932 40 H 0.044 0.956 41 H 0.037 0.963 42 H 0.203 0.797 43 H 0.060 0.940 44 H 0.107 0.893 45 H 0.073 0.927 46 H 0.105 0.895 47 H 0.101 0.899 48 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -17.722 -15.350 21.557 31.850 hybrid contribution -0.122 -0.219 -1.064 1.093 sum -17.844 -15.569 20.494 31.318 Atomic orbital electron populations 1.23545 0.75030 1.06328 1.03234 1.86090 1.24606 1.25762 1.87405 1.19284 0.91512 0.86138 0.92394 1.22785 1.03613 0.91800 1.06486 1.23435 0.89042 0.99231 0.90822 1.67562 1.08321 1.29110 1.14981 1.20665 0.93403 0.89594 0.99738 1.18182 0.86757 0.82172 0.77771 1.90746 1.64740 1.39622 1.50224 1.48107 1.07786 1.14491 1.61038 1.22929 0.99419 0.87906 0.93994 1.21962 0.95840 1.01659 0.97179 1.21038 0.95179 0.97374 0.95820 1.21624 1.00010 0.95996 0.96942 1.20880 0.96593 0.94246 0.85712 1.42676 1.55219 1.24217 1.17221 1.19679 1.20765 0.98189 0.99007 0.90469 1.25646 1.00908 1.02635 0.98142 1.69827 1.38368 1.40453 1.13672 0.85088 0.78278 0.79165 0.76932 1.21347 1.22203 1.19162 1.21891 1.01058 0.97190 0.95726 1.21752 0.78863 1.02896 0.97746 1.21305 0.93374 0.98791 1.05008 0.86148 0.90507 0.90715 0.80100 0.77782 0.83569 0.90331 0.90018 0.93202 0.89973 0.92390 0.93189 0.95598 0.96258 0.79702 0.94034 0.89314 0.92727 0.89469 0.89911 0.84339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.05 9.84 113.37 1.12 1.17 16 2 O -0.33 -4.70 10.51 -90.77 -0.95 -5.65 16 3 C 0.16 2.56 6.73 22.75 0.15 2.72 16 4 C -0.23 -2.22 9.12 22.52 0.21 -2.02 16 5 C 0.13 1.48 11.17 84.74 0.95 2.43 16 6 N -0.48 -8.89 6.35 -185.14 -1.18 -10.06 16 7 C 0.10 2.34 6.46 41.85 0.27 2.61 16 8 C 0.56 15.52 7.62 86.89 0.66 16.18 16 9 O -0.57 -19.02 15.93 -3.74 -0.06 -19.08 16 10 N -0.58 -14.16 2.98 -822.83 -2.45 -16.61 16 11 C 0.08 1.67 5.96 86.22 0.51 2.18 16 12 C -0.13 -3.07 5.13 30.53 0.16 -2.91 16 13 C -0.08 -1.87 2.15 -10.77 -0.02 -1.89 16 14 C -0.11 -3.50 4.80 30.59 0.15 -3.35 16 15 C 0.15 6.09 6.02 86.38 0.52 6.61 16 16 N -0.75 -39.42 5.60 -343.46 -1.92 -41.34 16 17 C -0.24 -13.95 9.99 84.03 0.84 -13.11 16 18 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 19 C -0.08 -4.77 5.50 84.86 0.47 -4.31 16 20 N -0.97 -60.80 13.06 21.65 0.28 -60.52 16 21 Si 0.98 46.57 29.55 68.60 2.03 48.59 16 22 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 23 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 24 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 25 C -0.12 -2.75 5.36 30.66 0.16 -2.58 16 26 C 0.11 2.44 6.43 86.35 0.56 3.00 16 27 C -0.16 -3.51 9.59 22.72 0.22 -3.29 16 28 H 0.12 0.16 8.14 -2.39 -0.02 0.14 16 29 H 0.08 0.09 7.71 -2.39 -0.02 0.08 16 30 H 0.07 0.14 7.71 -2.39 -0.02 0.12 16 31 H 0.18 0.37 6.45 -2.91 -0.02 0.35 16 32 H 0.21 0.71 8.06 -2.91 -0.02 0.69 16 33 H 0.15 2.99 3.97 -57.02 -0.23 2.76 16 34 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.08 1.99 6.50 -2.38 -0.02 1.97 16 36 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.03 1.02 6.53 -2.39 -0.02 1.01 16 41 H 0.02 0.77 8.14 -2.39 -0.02 0.76 16 42 H 0.37 20.83 7.67 -92.71 -0.71 20.11 16 43 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 44 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 46 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 47 H 0.08 2.02 7.00 -2.39 -0.02 2.00 16 48 H 0.14 3.26 7.79 -2.91 -0.02 3.24 16 Total: -1.00 -76.39 384.12 2.70 -73.69 By element: Atomic # 1 Polarization: 27.50 SS G_CDS: 0.05 Total: 27.55 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: 6.91 Total: 3.43 kcal Atomic # 7 Polarization: -123.27 SS G_CDS: -5.27 Total: -128.53 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -1.01 Total: -24.73 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.59 kcal Total: -76.39 2.70 -73.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482004731.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.122 kcal (2) G-P(sol) polarization free energy of solvation -76.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds