Wall clock time and date at job start Tue Mar 31 2020 17:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35673 * 116.99877 * 2 1 4 4 C 1.38922 * 119.68072 * 179.97438 * 3 2 1 5 5 C 1.38385 * 119.10926 * 180.02562 * 4 3 2 6 6 C 1.38824 * 118.48587 * 0.02562 * 5 4 3 7 7 C 1.50704 * 120.35477 * 180.02562 * 6 5 4 8 8 C 1.53005 * 109.46825 * 89.99956 * 7 6 5 9 9 C 1.50694 * 109.46827 * 179.97438 * 8 7 6 10 10 O 1.21281 * 120.00514 * 359.97438 * 9 8 7 11 11 N 1.34780 * 119.99796 * 180.02562 * 9 8 7 12 12 C 1.46499 * 120.00014 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.47231 * 325.00433 * 12 11 9 14 14 C 1.52994 * 109.47314 * 204.99859 * 12 11 9 15 15 N 1.46503 * 109.47130 * 55.00157 * 14 12 11 16 16 C 1.36935 * 120.00113 * 179.97438 * 15 14 12 17 17 H 1.07997 * 120.00037 * 0.02562 * 16 15 14 18 18 C 1.38815 * 120.00148 * 179.97438 * 16 15 14 19 19 N 1.31619 * 119.99520 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00088 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47210 * 60.00073 * 20 18 16 22 22 H 1.48500 * 109.47035 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47072 * 299.99943 * 20 18 16 24 24 C 1.53002 * 109.46893 * 84.99850 * 12 11 9 25 25 C 1.52995 * 117.50058 * 8.74872 * 24 12 11 26 26 C 1.53001 * 117.50154 * 300.08844 * 24 12 11 27 27 C 1.38046 * 119.29263 * 0.02562 * 6 5 4 28 28 N 1.31967 * 120.83264 * 0.02562 * 27 6 5 29 29 H 1.08993 * 109.47543 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46923 * 300.00138 * 1 2 3 31 31 H 1.09006 * 109.46668 * 59.99889 * 1 2 3 32 32 H 1.07997 * 120.44530 * 0.27676 * 4 3 2 33 33 H 1.08003 * 120.75576 * 180.02562 * 5 4 3 34 34 H 1.08997 * 109.47154 * 209.99640 * 7 6 5 35 35 H 1.08996 * 109.47157 * 330.00474 * 7 6 5 36 36 H 1.08997 * 109.46997 * 299.99780 * 8 7 6 37 37 H 1.08996 * 109.46830 * 60.00318 * 8 7 6 38 38 H 0.96995 * 120.00319 * 359.97438 * 11 9 8 39 39 H 1.09003 * 109.46901 * 175.00320 * 14 12 11 40 40 H 1.09003 * 109.47340 * 295.00206 * 14 12 11 41 41 H 0.97004 * 119.99666 * 0.02562 * 15 14 12 42 42 H 0.96998 * 119.99685 * 180.02562 * 19 18 16 43 43 H 1.09005 * 115.54862 * 154.41661 * 24 12 11 44 44 H 1.09005 * 117.49758 * 359.97438 * 25 24 12 45 45 H 1.09008 * 117.50219 * 145.01695 * 25 24 12 46 46 H 1.09004 * 117.49840 * 214.97847 * 26 24 12 47 47 H 1.08997 * 117.49459 * 359.97438 * 26 24 12 48 48 H 1.07994 * 119.58392 * 179.97438 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4327 1.2739 0.0005 5 6 4.0486 2.5131 0.0011 6 6 3.2506 3.6491 0.0016 7 6 3.8769 5.0198 0.0016 8 6 4.0883 5.4839 -1.4410 9 6 4.7141 6.8547 -1.4410 10 8 4.9657 7.4066 -0.3907 11 7 4.9931 7.4681 -2.6082 12 6 5.6009 8.8011 -2.6082 13 1 5.2158 9.3761 -1.7661 14 6 5.2573 9.5183 -3.9153 15 7 3.8032 9.5393 -4.0931 16 6 3.2573 10.1332 -5.1995 17 1 3.8986 10.5858 -5.9414 18 6 1.8795 10.1527 -5.3683 19 7 1.0980 9.6007 -4.4644 20 14 1.1348 10.9622 -6.8780 21 1 1.6364 10.2854 -8.1009 22 1 -0.3448 10.8497 -6.8210 23 1 1.5207 12.3958 -6.9121 24 6 7.1201 8.6688 -2.4832 25 6 7.7184 7.2650 -2.5923 26 6 7.6684 7.9727 -1.2360 27 6 1.8772 3.5097 0.0021 28 7 1.3187 2.3141 0.0026 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 4.0229 0.3694 -0.0035 33 1 5.1255 2.5946 0.0011 34 1 3.2187 5.7201 0.5158 35 1 4.8376 4.9803 0.5150 36 1 4.7466 4.7836 -1.9551 37 1 3.1276 5.5234 -1.9543 38 1 4.7915 7.0270 -3.4482 39 1 5.6337 10.5406 -3.8785 40 1 5.7179 8.9913 -4.7509 41 1 3.2272 9.1332 -3.4266 42 1 0.1354 9.6140 -4.5825 43 1 7.6993 9.4961 -2.8935 44 1 7.0296 6.4354 -2.7528 45 1 8.6914 7.1685 -3.0741 46 1 8.6086 8.3416 -0.8260 47 1 6.9468 7.6092 -0.5043 48 1 1.2519 4.3902 0.0029 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483572507.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:50 Heat of formation + Delta-G solvation = -5.262520 kcal Electronic energy + Delta-G solvation = -28087.113295 eV Core-core repulsion = 24143.575934 eV Total energy + Delta-G solvation = -3943.537361 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.85572 -39.99049 -38.29423 -37.19690 -34.90639 -34.20443 -33.26179 -32.38444 -31.22898 -29.86157 -28.17147 -27.39263 -24.85306 -23.99523 -23.60896 -22.25040 -21.87560 -21.47466 -20.30398 -19.62324 -18.60055 -17.39388 -17.32542 -16.86172 -16.20364 -16.10667 -15.74187 -15.19184 -14.88955 -14.71102 -14.63187 -14.37547 -14.02440 -13.77968 -13.42901 -13.25674 -13.21724 -13.03302 -12.66740 -12.42587 -12.16806 -12.06441 -11.77664 -11.58898 -11.35026 -11.30365 -11.24244 -11.02357 -10.90971 -10.82164 -10.26250 -10.12773 -10.07016 -9.81758 -9.78320 -9.59832 -9.50845 -8.93465 -8.63250 -8.54389 -6.98728 -5.80706 -3.10349 0.95258 1.06456 2.88499 2.89836 3.40486 3.42345 3.46155 3.46972 3.62100 4.05742 4.14390 4.53393 4.59124 4.74185 4.78660 4.87655 4.92225 5.01194 5.08804 5.09332 5.14328 5.18101 5.19902 5.26072 5.40558 5.46374 5.51817 5.54790 5.64337 5.72574 5.78461 5.82528 5.83256 6.00478 6.02160 6.05887 6.19507 6.22004 6.27292 6.31148 6.48336 6.51336 6.68969 6.94475 7.01349 7.65356 7.66471 7.85653 8.37315 8.53455 9.49186 10.04709 10.40326 11.41540 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009022 B = 0.002837 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3102.881346 B = 9867.532248 C =12459.227587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.312 6.312 3 C 0.311 3.689 4 C -0.189 4.189 5 C -0.038 4.038 6 C -0.167 4.167 7 C -0.053 4.053 8 C -0.138 4.138 9 C 0.515 3.485 10 O -0.545 6.545 11 N -0.709 5.709 12 C 0.168 3.832 13 H 0.090 0.910 14 C 0.148 3.852 15 N -0.731 5.731 16 C -0.243 4.243 17 H 0.070 0.930 18 C -0.011 4.011 19 N -0.931 5.931 20 Si 0.908 3.092 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C -0.160 4.160 25 C -0.177 4.177 26 C -0.187 4.187 27 C 0.146 3.854 28 N -0.537 5.537 29 H 0.094 0.906 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.140 0.860 33 H 0.141 0.859 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.405 0.595 39 H 0.033 0.967 40 H 0.026 0.974 41 H 0.386 0.614 42 H 0.256 0.744 43 H 0.108 0.892 44 H 0.091 0.909 45 H 0.085 0.915 46 H 0.083 0.917 47 H 0.117 0.883 48 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.596 -16.996 9.350 20.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.219 6.219 3 C 0.132 3.868 4 C -0.210 4.210 5 C -0.064 4.064 6 C -0.169 4.169 7 C -0.091 4.091 8 C -0.178 4.178 9 C 0.302 3.698 10 O -0.424 6.424 11 N -0.359 5.359 12 C 0.063 3.937 13 H 0.108 0.892 14 C 0.020 3.980 15 N -0.376 5.376 16 C -0.374 4.374 17 H 0.088 0.912 18 C -0.208 4.208 19 N -0.579 5.579 20 Si 0.739 3.261 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.213 1.213 24 C -0.180 4.180 25 C -0.215 4.215 26 C -0.224 4.224 27 C -0.010 4.010 28 N -0.260 5.260 29 H 0.112 0.888 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.157 0.843 33 H 0.159 0.841 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.108 0.892 37 H 0.116 0.884 38 H 0.240 0.760 39 H 0.051 0.949 40 H 0.043 0.957 41 H 0.220 0.780 42 H 0.066 0.934 43 H 0.126 0.874 44 H 0.109 0.891 45 H 0.104 0.896 46 H 0.101 0.899 47 H 0.135 0.865 48 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 6.918 -16.865 9.934 20.759 hybrid contribution -0.121 0.333 -1.218 1.268 sum 6.797 -16.532 8.716 19.886 Atomic orbital electron populations 1.22850 0.77217 1.02811 1.02612 1.86217 1.22950 1.24727 1.87984 1.19870 0.89460 0.84751 0.92719 1.21046 0.91982 0.99510 1.08456 1.21350 1.00551 0.90723 0.93727 1.20794 0.94746 0.96542 1.04841 1.20168 1.01875 0.91382 0.95724 1.21682 1.02995 0.94336 0.98811 1.20529 0.77807 0.87540 0.83893 1.90614 1.53473 1.66934 1.31366 1.46011 1.62329 1.18883 1.08688 1.20728 0.89285 0.83277 1.00404 0.89169 1.20910 0.87496 0.96995 0.92647 1.42330 0.99669 1.69472 1.26124 1.19162 0.90219 1.29345 0.98701 0.91216 1.24742 0.96099 1.01384 0.98537 1.69650 1.03496 1.49519 1.35252 0.86266 0.78125 0.79216 0.82533 1.21279 1.21687 1.21271 1.22697 0.95901 0.96290 1.03074 1.22876 1.01618 0.95839 1.01129 1.23337 1.02899 1.04262 0.91888 1.22427 0.92436 0.93622 0.92496 1.67344 1.40910 0.98810 1.18961 0.88751 0.92306 0.92191 0.84251 0.84086 0.89701 0.90093 0.89191 0.88353 0.76016 0.94930 0.95664 0.78010 0.93435 0.87410 0.89059 0.89624 0.89868 0.86480 0.82083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.38 101.05 1.05 1.39 16 2 O -0.31 -3.43 10.48 -18.72 -0.20 -3.62 16 3 C 0.31 3.62 7.49 -17.12 -0.13 3.49 16 4 C -0.19 -1.84 10.04 -39.27 -0.39 -2.24 16 5 C -0.04 -0.34 9.85 -39.31 -0.39 -0.73 16 6 C -0.17 -1.68 5.15 -104.47 -0.54 -2.21 16 7 C -0.05 -0.55 4.66 -27.88 -0.13 -0.68 16 8 C -0.14 -1.52 5.68 -27.88 -0.16 -1.68 16 9 C 0.52 7.41 6.66 -10.99 -0.07 7.34 16 10 O -0.55 -9.28 13.01 5.56 0.07 -9.20 16 11 N -0.71 -10.47 3.05 -53.81 -0.16 -10.64 16 12 C 0.17 2.73 2.59 -67.93 -0.18 2.55 16 13 H 0.09 1.69 7.58 -51.93 -0.39 1.29 16 14 C 0.15 2.80 5.80 -4.04 -0.02 2.78 16 15 N -0.73 -17.66 5.43 -59.91 -0.33 -17.99 16 16 C -0.24 -6.59 9.99 -15.06 -0.15 -6.75 16 17 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 18 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 19 N -0.93 -27.48 13.06 55.49 0.72 -26.76 16 20 Si 0.91 22.02 29.55 -169.99 -5.02 16.99 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 C -0.16 -2.20 5.70 -90.62 -0.52 -2.71 16 25 C -0.18 -2.16 9.74 -26.70 -0.26 -2.42 16 26 C -0.19 -2.47 9.82 -26.69 -0.26 -2.74 16 27 C 0.15 1.63 10.85 -17.56 -0.19 1.43 16 28 N -0.54 -6.61 9.22 -13.33 -0.12 -6.73 16 29 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.50 8.10 -51.93 -0.42 0.07 16 31 H 0.06 0.53 8.11 -51.93 -0.42 0.10 16 32 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 33 H 0.14 0.93 8.06 -52.48 -0.42 0.50 16 34 H 0.08 0.96 8.05 -51.93 -0.42 0.54 16 35 H 0.08 0.82 8.05 -51.93 -0.42 0.40 16 36 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.40 5.78 8.60 -40.82 -0.35 5.43 16 39 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.39 9.91 7.33 -40.82 -0.30 9.61 16 42 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 43 H 0.11 1.39 8.11 -51.93 -0.42 0.97 16 44 H 0.09 1.10 6.67 -51.93 -0.35 0.75 16 45 H 0.09 0.93 8.14 -51.92 -0.42 0.51 16 46 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 47 H 0.12 1.77 5.02 -51.93 -0.26 1.51 16 48 H 0.16 1.60 8.06 -52.49 -0.42 1.17 16 LS Contribution 397.98 15.07 6.00 6.00 Total: -1.00 -32.15 397.98 -9.00 -41.15 By element: Atomic # 1 Polarization: 21.91 SS G_CDS: -7.52 Total: 14.39 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: -2.44 Total: -3.59 kcal Atomic # 7 Polarization: -62.22 SS G_CDS: 0.11 Total: -62.11 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: -0.12 Total: -12.83 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.15 -9.00 -41.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483572507.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.885 kcal (2) G-P(sol) polarization free energy of solvation -32.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds