Wall clock time and date at job start Tue Mar 31 2020 17:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35673 * 116.99877 * 2 1 4 4 C 1.38922 * 119.68072 * 179.97438 * 3 2 1 5 5 C 1.38385 * 119.10926 * 180.02562 * 4 3 2 6 6 C 1.38824 * 118.48587 * 0.02562 * 5 4 3 7 7 C 1.50704 * 120.35477 * 180.02562 * 6 5 4 8 8 C 1.53005 * 109.46825 * 89.99956 * 7 6 5 9 9 C 1.50694 * 109.46827 * 179.97438 * 8 7 6 10 10 O 1.21281 * 120.00514 * 359.97438 * 9 8 7 11 11 N 1.34780 * 119.99796 * 180.02562 * 9 8 7 12 12 C 1.46499 * 120.00014 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.47231 * 325.00433 * 12 11 9 14 14 C 1.52994 * 109.47314 * 204.99859 * 12 11 9 15 15 N 1.46503 * 109.47130 * 55.00157 * 14 12 11 16 16 C 1.36935 * 120.00113 * 179.97438 * 15 14 12 17 17 H 1.07997 * 120.00037 * 0.02562 * 16 15 14 18 18 C 1.38815 * 120.00148 * 179.97438 * 16 15 14 19 19 N 1.31619 * 119.99520 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00088 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47210 * 60.00073 * 20 18 16 22 22 H 1.48500 * 109.47035 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47072 * 299.99943 * 20 18 16 24 24 C 1.53002 * 109.46893 * 84.99850 * 12 11 9 25 25 C 1.52995 * 117.50058 * 8.74872 * 24 12 11 26 26 C 1.53001 * 117.50154 * 300.08844 * 24 12 11 27 27 C 1.38046 * 119.29263 * 0.02562 * 6 5 4 28 28 N 1.31967 * 120.83264 * 0.02562 * 27 6 5 29 29 H 1.08993 * 109.47543 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46923 * 300.00138 * 1 2 3 31 31 H 1.09006 * 109.46668 * 59.99889 * 1 2 3 32 32 H 1.07997 * 120.44530 * 0.27676 * 4 3 2 33 33 H 1.08003 * 120.75576 * 180.02562 * 5 4 3 34 34 H 1.08997 * 109.47154 * 209.99640 * 7 6 5 35 35 H 1.08996 * 109.47157 * 330.00474 * 7 6 5 36 36 H 1.08997 * 109.46997 * 299.99780 * 8 7 6 37 37 H 1.08996 * 109.46830 * 60.00318 * 8 7 6 38 38 H 0.96995 * 120.00319 * 359.97438 * 11 9 8 39 39 H 1.09003 * 109.46901 * 175.00320 * 14 12 11 40 40 H 1.09003 * 109.47340 * 295.00206 * 14 12 11 41 41 H 0.97004 * 119.99666 * 0.02562 * 15 14 12 42 42 H 0.96998 * 119.99685 * 180.02562 * 19 18 16 43 43 H 1.09005 * 115.54862 * 154.41661 * 24 12 11 44 44 H 1.09005 * 117.49758 * 359.97438 * 25 24 12 45 45 H 1.09008 * 117.50219 * 145.01695 * 25 24 12 46 46 H 1.09004 * 117.49840 * 214.97847 * 26 24 12 47 47 H 1.08997 * 117.49459 * 359.97438 * 26 24 12 48 48 H 1.07994 * 119.58392 * 179.97438 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4327 1.2739 0.0005 5 6 4.0486 2.5131 0.0011 6 6 3.2506 3.6491 0.0016 7 6 3.8769 5.0198 0.0016 8 6 4.0883 5.4839 -1.4410 9 6 4.7141 6.8547 -1.4410 10 8 4.9657 7.4066 -0.3907 11 7 4.9931 7.4681 -2.6082 12 6 5.6009 8.8011 -2.6082 13 1 5.2158 9.3761 -1.7661 14 6 5.2573 9.5183 -3.9153 15 7 3.8032 9.5393 -4.0931 16 6 3.2573 10.1332 -5.1995 17 1 3.8986 10.5858 -5.9414 18 6 1.8795 10.1527 -5.3683 19 7 1.0980 9.6007 -4.4644 20 14 1.1348 10.9622 -6.8780 21 1 1.6364 10.2854 -8.1009 22 1 -0.3448 10.8497 -6.8210 23 1 1.5207 12.3958 -6.9121 24 6 7.1201 8.6688 -2.4832 25 6 7.7184 7.2650 -2.5923 26 6 7.6684 7.9727 -1.2360 27 6 1.8772 3.5097 0.0021 28 7 1.3187 2.3141 0.0026 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 4.0229 0.3694 -0.0035 33 1 5.1255 2.5946 0.0011 34 1 3.2187 5.7201 0.5158 35 1 4.8376 4.9803 0.5150 36 1 4.7466 4.7836 -1.9551 37 1 3.1276 5.5234 -1.9543 38 1 4.7915 7.0270 -3.4482 39 1 5.6337 10.5406 -3.8785 40 1 5.7179 8.9913 -4.7509 41 1 3.2272 9.1332 -3.4266 42 1 0.1354 9.6140 -4.5825 43 1 7.6993 9.4961 -2.8935 44 1 7.0296 6.4354 -2.7528 45 1 8.6914 7.1685 -3.0741 46 1 8.6086 8.3416 -0.8260 47 1 6.9468 7.6092 -0.5043 48 1 1.2519 4.3902 0.0029 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483572507.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:49 Heat of formation + Delta-G solvation = -26.264492 kcal Electronic energy + Delta-G solvation = -28088.024009 eV Core-core repulsion = 24143.575934 eV Total energy + Delta-G solvation = -3944.448075 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.66935 -41.15325 -39.10020 -38.35872 -36.52373 -35.10816 -34.72872 -33.21260 -32.95956 -30.88257 -29.59004 -28.17923 -26.12422 -25.49075 -24.37821 -23.42887 -22.98390 -22.67174 -21.39801 -20.82250 -19.36636 -19.24523 -18.14055 -18.05152 -17.28242 -17.10654 -16.96438 -16.51623 -16.05440 -15.78338 -15.45109 -15.39176 -15.15136 -15.13109 -14.86613 -14.57324 -14.34681 -14.02024 -13.87065 -13.55326 -13.17790 -13.11030 -12.90435 -12.78730 -12.68818 -12.65475 -12.47155 -12.27531 -12.12282 -12.05161 -11.93998 -11.82504 -11.23330 -10.96895 -10.87801 -10.78878 -10.65201 -10.58040 -9.86586 -9.36113 -8.99821 -7.93485 -5.22543 0.15099 0.29824 1.48874 1.51062 1.57146 1.74899 2.16201 2.31149 2.56554 2.77162 3.00910 3.35979 3.40757 3.63679 3.73562 3.95807 4.00574 4.02202 4.07490 4.14986 4.21878 4.23350 4.31694 4.38782 4.41371 4.46089 4.50768 4.54060 4.66057 4.72828 4.74802 4.77531 4.88409 4.92643 4.95703 5.02279 5.10351 5.19063 5.21598 5.31178 5.39828 5.45015 5.51188 5.51815 5.67260 6.23236 6.27263 6.67795 6.85114 7.35006 7.37337 8.08564 8.32841 9.29100 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009022 B = 0.002837 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3102.881346 B = 9867.532248 C =12459.227587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.321 6.321 3 C 0.290 3.710 4 C -0.189 4.189 5 C -0.031 4.031 6 C -0.164 4.164 7 C -0.043 4.043 8 C -0.129 4.129 9 C 0.513 3.487 10 O -0.573 6.573 11 N -0.708 5.708 12 C 0.179 3.821 13 H 0.059 0.941 14 C 0.150 3.850 15 N -0.742 5.742 16 C -0.245 4.245 17 H 0.077 0.923 18 C -0.072 4.072 19 N -0.966 5.966 20 Si 0.971 3.029 21 H -0.276 1.276 22 H -0.298 1.298 23 H -0.281 1.281 24 C -0.171 4.171 25 C -0.159 4.159 26 C -0.188 4.188 27 C 0.128 3.872 28 N -0.559 5.559 29 H 0.123 0.877 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.162 0.838 33 H 0.172 0.828 34 H 0.068 0.932 35 H 0.087 0.913 36 H 0.118 0.882 37 H 0.094 0.906 38 H 0.408 0.592 39 H 0.033 0.967 40 H 0.039 0.961 41 H 0.375 0.625 42 H 0.250 0.750 43 H 0.119 0.881 44 H 0.093 0.907 45 H 0.106 0.894 46 H 0.098 0.902 47 H 0.098 0.902 48 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.641 -18.123 8.474 22.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.229 6.229 3 C 0.111 3.889 4 C -0.209 4.209 5 C -0.056 4.056 6 C -0.167 4.167 7 C -0.082 4.082 8 C -0.169 4.169 9 C 0.301 3.699 10 O -0.454 6.454 11 N -0.358 5.358 12 C 0.074 3.926 13 H 0.077 0.923 14 C 0.023 3.977 15 N -0.385 5.385 16 C -0.376 4.376 17 H 0.095 0.905 18 C -0.265 4.265 19 N -0.616 5.616 20 Si 0.801 3.199 21 H -0.202 1.202 22 H -0.225 1.225 23 H -0.207 1.207 24 C -0.190 4.190 25 C -0.196 4.196 26 C -0.225 4.225 27 C -0.027 4.027 28 N -0.283 5.283 29 H 0.141 0.859 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.179 0.821 33 H 0.189 0.811 34 H 0.087 0.913 35 H 0.106 0.894 36 H 0.136 0.864 37 H 0.112 0.888 38 H 0.244 0.756 39 H 0.051 0.949 40 H 0.057 0.943 41 H 0.207 0.793 42 H 0.059 0.941 43 H 0.137 0.863 44 H 0.112 0.888 45 H 0.125 0.875 46 H 0.117 0.883 47 H 0.116 0.884 48 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 9.006 -17.990 9.041 22.056 hybrid contribution -0.707 0.693 -0.903 1.340 sum 8.299 -17.297 8.137 20.839 Atomic orbital electron populations 1.22999 0.76230 1.04495 1.01944 1.86204 1.24033 1.24604 1.88047 1.20252 0.90456 0.84754 0.93402 1.21362 0.91367 1.00722 1.07436 1.21683 1.01918 0.89810 0.92202 1.20737 0.94318 0.96719 1.04889 1.20045 1.01800 0.91205 0.95132 1.21672 1.02937 0.92721 0.99565 1.21086 0.77172 0.88478 0.83153 1.90608 1.54594 1.67892 1.32272 1.45992 1.62397 1.18294 1.09132 1.20413 0.91245 0.83483 0.97468 0.92290 1.21025 0.84624 0.97527 0.94530 1.42494 1.01728 1.69106 1.25156 1.19573 0.90561 1.28256 0.99248 0.90492 1.25520 0.96742 1.02794 1.01410 1.69809 1.03208 1.51459 1.37173 0.85248 0.76666 0.78415 0.79614 1.20188 1.22462 1.20736 1.22602 0.93949 0.98041 1.04427 1.22965 1.02311 0.94498 0.99835 1.23282 1.02950 1.04451 0.91773 1.22568 0.93297 0.93525 0.93313 1.67297 1.41795 0.99344 1.19837 0.85904 0.92796 0.93028 0.82084 0.81063 0.91292 0.89435 0.86395 0.88790 0.75592 0.94931 0.94336 0.79274 0.94137 0.86343 0.88836 0.87532 0.88338 0.88426 0.82017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.63 10.38 113.37 1.18 1.81 16 2 O -0.32 -6.90 10.48 -89.90 -0.94 -7.84 16 3 C 0.29 6.60 7.49 84.79 0.63 7.24 16 4 C -0.19 -3.32 10.04 22.47 0.23 -3.09 16 5 C -0.03 -0.48 9.85 22.45 0.22 -0.26 16 6 C -0.16 -3.13 5.15 -19.77 -0.10 -3.23 16 7 C -0.04 -0.86 4.66 29.85 0.14 -0.72 16 8 C -0.13 -2.70 5.68 29.85 0.17 -2.53 16 9 C 0.51 14.55 6.66 87.65 0.58 15.14 16 10 O -0.57 -19.67 13.01 -3.03 -0.04 -19.71 16 11 N -0.71 -20.56 3.05 -442.54 -1.35 -21.91 16 12 C 0.18 5.77 2.59 44.99 0.12 5.89 16 13 H 0.06 2.27 7.58 -2.39 -0.02 2.25 16 14 C 0.15 5.60 5.80 86.38 0.50 6.10 16 15 N -0.74 -35.95 5.43 -343.45 -1.87 -37.82 16 16 C -0.24 -13.19 9.99 84.03 0.84 -12.35 16 17 H 0.08 3.96 7.83 -2.91 -0.02 3.94 16 18 C -0.07 -4.04 5.50 84.86 0.47 -3.58 16 19 N -0.97 -57.94 13.06 21.65 0.28 -57.66 16 20 Si 0.97 45.27 29.55 68.60 2.03 47.30 16 21 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 22 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 23 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 24 C -0.17 -4.41 5.70 -10.79 -0.06 -4.47 16 25 C -0.16 -3.42 9.74 30.62 0.30 -3.12 16 26 C -0.19 -4.63 9.82 30.62 0.30 -4.32 16 27 C 0.13 2.89 10.85 84.63 0.92 3.81 16 28 N -0.56 -13.92 9.22 -308.95 -2.85 -16.77 16 29 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.05 0.92 8.10 -2.39 -0.02 0.90 16 31 H 0.05 0.92 8.11 -2.38 -0.02 0.90 16 32 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 33 H 0.17 1.59 8.06 -2.91 -0.02 1.57 16 34 H 0.07 1.59 8.05 -2.39 -0.02 1.58 16 35 H 0.09 1.64 8.05 -2.39 -0.02 1.62 16 36 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.09 2.10 8.14 -2.39 -0.02 2.09 16 38 H 0.41 11.29 8.60 -92.71 -0.80 10.49 16 39 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.37 19.64 7.33 -92.71 -0.68 18.96 16 42 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 43 H 0.12 2.80 8.11 -2.38 -0.02 2.78 16 44 H 0.09 1.98 6.67 -2.38 -0.02 1.96 16 45 H 0.11 1.89 8.14 -2.38 -0.02 1.87 16 46 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 47 H 0.10 2.87 5.02 -2.39 -0.01 2.86 16 48 H 0.16 3.40 8.06 -2.91 -0.02 3.38 16 Total: -1.00 -69.56 397.98 1.19 -68.36 By element: Atomic # 1 Polarization: 44.25 SS G_CDS: -0.50 Total: 43.75 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: 6.43 Total: 2.30 kcal Atomic # 7 Polarization: -128.38 SS G_CDS: -5.78 Total: -134.16 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: -0.98 Total: -27.55 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -69.56 1.19 -68.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483572507.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.097 kcal (2) G-P(sol) polarization free energy of solvation -69.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds