Wall clock time and date at job start Tue Mar 31 2020 17:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42907 * 113.99433 * 2 1 4 4 C 1.50703 * 109.46812 * 179.97438 * 3 2 1 5 5 C 1.38346 * 120.34711 * 89.99886 * 4 3 2 6 6 N 1.31924 * 121.08138 * 180.02562 * 5 4 3 7 7 C 1.31698 * 121.87955 * 359.97438 * 6 5 4 8 8 C 1.39521 * 120.56479 * 0.02562 * 7 6 5 9 9 C 1.47840 * 120.56166 * 180.02562 * 8 7 6 10 10 O 1.21548 * 120.00024 * 179.97438 * 9 8 7 11 11 N 1.34783 * 119.99688 * 0.02562 * 9 8 7 12 12 C 1.46496 * 119.99709 * 180.02562 * 11 9 8 13 13 H 1.08995 * 110.02111 * 326.38949 * 12 11 9 14 14 C 1.53882 * 110.07309 * 87.81040 * 12 11 9 15 15 C 1.54267 * 106.59905 * 119.30308 * 14 12 11 16 16 C 1.54889 * 104.19467 * 23.60979 * 15 14 12 17 17 H 1.08999 * 110.91491 * 80.44193 * 16 15 14 18 18 C 1.53001 * 110.75493 * 203.73936 * 16 15 14 19 19 N 1.46490 * 109.47264 * 288.32759 * 18 16 15 20 20 C 1.36935 * 120.00121 * 179.97438 * 19 18 16 21 21 H 1.07997 * 120.00139 * 0.02562 * 20 19 18 22 22 C 1.38816 * 120.00401 * 180.02562 * 20 19 18 23 23 N 1.31624 * 119.99569 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00172 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47055 * 180.02562 * 24 22 20 26 26 H 1.48505 * 109.46653 * 299.99639 * 24 22 20 27 27 H 1.48495 * 109.47483 * 60.00002 * 24 22 20 28 28 C 1.54271 * 110.02885 * 204.99850 * 12 11 9 29 29 C 1.38354 * 120.34722 * 270.30660 * 4 3 2 30 30 H 1.08999 * 109.47493 * 60.00367 * 1 2 3 31 31 H 1.09007 * 109.46811 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47538 * 299.99878 * 1 2 3 33 33 H 1.08997 * 109.46973 * 59.99876 * 3 2 1 34 34 H 1.09000 * 109.47165 * 299.99898 * 3 2 1 35 35 H 1.08005 * 119.46214 * 359.97438 * 5 4 3 36 36 H 1.08001 * 119.71740 * 179.97438 * 7 6 5 37 37 H 0.97005 * 119.99773 * 359.97438 * 11 9 8 38 38 H 1.09004 * 110.02606 * 238.58771 * 14 12 11 39 39 H 1.09002 * 110.03061 * 359.96704 * 14 12 11 40 40 H 1.08991 * 110.48623 * 264.93368 * 15 14 12 41 41 H 1.09000 * 110.48373 * 142.28652 * 15 14 12 42 42 H 1.09003 * 109.46836 * 168.32466 * 18 16 15 43 43 H 1.08999 * 109.47071 * 48.33505 * 18 16 15 44 44 H 0.97000 * 120.00577 * 0.02562 * 19 18 16 45 45 H 0.97001 * 119.99885 * 359.97438 * 23 22 20 46 46 H 1.08998 * 110.48457 * 98.37987 * 28 12 11 47 47 H 1.08997 * 110.48626 * 335.73699 * 28 12 11 48 48 H 1.07992 * 120.85939 * 359.97438 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5125 1.1866 0.0006 5 6 4.2098 1.1312 -1.1930 6 7 5.5247 1.0266 -1.2093 7 6 6.2319 0.9708 -0.0997 8 6 5.6038 1.0207 1.1451 9 6 6.3978 0.9586 2.3907 10 8 5.8400 1.0034 3.4698 11 7 7.7401 0.8534 2.3297 12 6 8.5268 0.7913 3.5639 13 1 8.0551 1.3967 4.3379 14 6 8.6511 -0.6673 4.0382 15 6 10.1573 -1.0008 4.0476 16 6 10.8507 0.3779 4.1797 17 1 10.8491 0.7165 5.2158 18 6 12.2783 0.3215 3.6322 19 7 13.1217 -0.4522 4.5464 20 6 14.4480 -0.6392 4.2616 21 1 14.8723 -0.2160 3.3632 22 6 15.2473 -1.3729 5.1276 23 7 14.7300 -1.8892 6.2223 24 14 17.0567 -1.6273 4.7394 25 1 17.6838 -2.4396 5.8129 26 1 17.1894 -2.3363 3.4413 27 1 17.7351 -0.3091 4.6552 28 6 9.9618 1.2933 3.3017 29 6 4.2083 1.1253 1.1949 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.6884 1.8464 0.8900 34 1 1.6885 1.8465 -0.8900 35 1 3.6687 1.1735 -2.1267 36 1 7.3071 0.8849 -0.1538 37 1 8.1851 0.8181 1.4685 38 1 8.2397 -0.7697 5.0424 39 1 8.1255 -1.3297 3.3503 40 1 10.4465 -1.4854 3.1152 41 1 10.4023 -1.6344 4.9000 42 1 12.6731 1.3335 3.5421 43 1 12.2728 -0.1548 2.6518 44 1 12.7407 -0.8328 5.3532 45 1 13.7905 -1.7567 6.4241 46 1 10.0642 2.3338 3.6098 47 1 10.2194 1.1791 2.2488 48 1 3.6890 1.1619 2.1411 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486203364.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:28 Heat of formation + Delta-G solvation = -43.212628 kcal Electronic energy + Delta-G solvation = -27340.716741 eV Core-core repulsion = 23395.533740 eV Total energy + Delta-G solvation = -3945.183001 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.15541 -39.77503 -38.31844 -37.98541 -35.10837 -33.88871 -33.42641 -32.41522 -30.97400 -28.77197 -28.13658 -27.68946 -26.09370 -24.94265 -23.95343 -23.17188 -22.41152 -21.06563 -20.47028 -19.54360 -18.24109 -17.48712 -17.20789 -17.06870 -16.98120 -16.35776 -15.96815 -15.77733 -15.43957 -15.06161 -14.89044 -14.24366 -13.97248 -13.70878 -13.62321 -13.51881 -13.46188 -13.24383 -13.09183 -12.98841 -12.46584 -12.26418 -12.01674 -11.77960 -11.68403 -10.95476 -10.77931 -10.65056 -10.53972 -10.51924 -10.36254 -10.34651 -10.30539 -10.25359 -9.95684 -9.84347 -9.68152 -9.24298 -9.13388 -8.85154 -6.97003 -6.08063 -3.07153 0.14833 0.62401 2.47243 2.80242 3.15859 3.52918 3.54832 3.56683 3.74200 3.79524 4.16163 4.22561 4.33478 4.40158 4.49973 4.59351 4.64802 4.71756 4.73896 4.81743 4.85975 4.95370 4.97680 5.07985 5.16495 5.36930 5.48455 5.50935 5.55803 5.57743 5.61234 5.66255 5.76193 5.82700 5.96415 5.99678 6.05842 6.09159 6.22587 6.35114 6.48187 6.49444 6.51707 6.72794 6.84909 7.19605 7.32727 7.82879 7.89299 8.78577 9.26536 10.12890 10.28198 11.40679 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.030026 B = 0.001705 C = 0.001669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.288120 B =16415.001962 C =16769.490359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.386 6.386 3 C 0.107 3.893 4 C -0.153 4.153 5 C 0.143 3.857 6 N -0.486 5.486 7 C 0.141 3.859 8 C -0.187 4.187 9 C 0.563 3.437 10 O -0.533 6.533 11 N -0.715 5.715 12 C 0.141 3.859 13 H 0.093 0.907 14 C -0.134 4.134 15 C -0.112 4.112 16 C -0.097 4.097 17 H 0.078 0.922 18 C 0.167 3.833 19 N -0.743 5.743 20 C -0.332 4.332 21 H 0.063 0.937 22 C -0.046 4.046 23 N -0.944 5.944 24 Si 1.080 2.920 25 H -0.285 1.285 26 H -0.296 1.296 27 H -0.295 1.295 28 C -0.121 4.121 29 C 0.005 3.995 30 H 0.043 0.957 31 H 0.089 0.911 32 H 0.044 0.956 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.162 0.838 36 H 0.162 0.838 37 H 0.399 0.601 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.018 0.982 43 H 0.020 0.980 44 H 0.367 0.633 45 H 0.255 0.745 46 H 0.073 0.927 47 H 0.073 0.927 48 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.908 8.501 -15.051 33.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.305 6.305 3 C 0.030 3.970 4 C -0.155 4.155 5 C -0.014 4.014 6 N -0.193 5.193 7 C -0.017 4.017 8 C -0.192 4.192 9 C 0.349 3.651 10 O -0.410 6.410 11 N -0.366 5.366 12 C 0.037 3.963 13 H 0.111 0.889 14 C -0.172 4.172 15 C -0.150 4.150 16 C -0.117 4.117 17 H 0.096 0.904 18 C 0.040 3.960 19 N -0.388 5.388 20 C -0.463 4.463 21 H 0.081 0.919 22 C -0.244 4.244 23 N -0.590 5.590 24 Si 0.911 3.089 25 H -0.210 1.210 26 H -0.223 1.223 27 H -0.223 1.223 28 C -0.159 4.159 29 C -0.022 4.022 30 H 0.062 0.938 31 H 0.107 0.893 32 H 0.062 0.938 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.179 0.821 36 H 0.179 0.821 37 H 0.235 0.765 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.036 0.964 43 H 0.037 0.963 44 H 0.200 0.800 45 H 0.066 0.934 46 H 0.092 0.908 47 H 0.092 0.908 48 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -27.224 7.729 -14.736 31.907 hybrid contribution -1.968 0.833 -0.007 2.137 sum -29.193 8.563 -14.743 33.807 Atomic orbital electron populations 1.22798 0.80416 1.03206 1.00206 1.87986 1.20079 1.26966 1.95461 1.21234 0.88456 0.85566 1.01725 1.20582 0.96002 1.04732 0.94186 1.22932 0.89906 0.90924 0.97648 1.67779 1.07890 1.12843 1.30791 1.23081 1.00433 0.91379 0.86800 1.21051 0.95155 1.08001 0.95017 1.17997 0.82321 0.76562 0.88255 1.90790 1.70878 1.49794 1.29587 1.46155 1.06023 1.74150 1.10279 1.21774 0.91214 0.97373 0.85914 0.88907 1.22594 0.97641 0.95294 1.01701 1.22355 0.92787 0.97273 1.02578 1.22291 0.95234 0.94573 0.99554 0.90364 1.20566 0.87655 0.94669 0.93140 1.42344 1.07507 1.63688 1.25293 1.20039 0.86434 1.32000 1.07802 0.91851 1.25772 1.05725 0.97758 0.95101 1.70883 1.14521 1.47669 1.25936 0.83241 0.74621 0.75893 0.75149 1.21035 1.22309 1.22296 1.22631 0.92442 0.99889 1.00975 1.21643 0.92465 0.89104 0.98980 0.93797 0.89288 0.93761 0.91761 0.91626 0.82064 0.82111 0.76510 0.91219 0.91643 0.91424 0.91269 0.96393 0.96269 0.79996 0.93427 0.90832 0.90801 0.83338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 11.01 101.05 1.11 1.25 16 2 O -0.39 -2.97 10.69 -35.23 -0.38 -3.35 16 3 C 0.11 0.62 6.08 36.01 0.22 0.84 16 4 C -0.15 -1.17 5.52 -104.54 -0.58 -1.75 16 5 C 0.14 1.09 10.85 -17.47 -0.19 0.90 16 6 N -0.49 -4.48 10.35 -12.91 -0.13 -4.61 16 7 C 0.14 1.21 10.71 -17.13 -0.18 1.03 16 8 C -0.19 -1.82 5.89 -104.82 -0.62 -2.43 16 9 C 0.56 6.52 7.78 -12.33 -0.10 6.43 16 10 O -0.53 -8.00 16.08 5.32 0.09 -7.92 16 11 N -0.71 -7.15 4.94 -53.66 -0.27 -7.41 16 12 C 0.14 1.65 3.24 -66.81 -0.22 1.43 16 13 H 0.09 1.19 7.56 -51.93 -0.39 0.79 16 14 C -0.13 -1.71 6.59 -25.61 -0.17 -1.88 16 15 C -0.11 -1.67 6.20 -25.07 -0.16 -1.82 16 16 C -0.10 -1.50 2.91 -88.62 -0.26 -1.76 16 17 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 18 C 0.17 3.32 5.70 -4.05 -0.02 3.30 16 19 N -0.74 -18.80 5.52 -59.91 -0.33 -19.13 16 20 C -0.33 -9.49 9.99 -15.06 -0.15 -9.64 16 21 H 0.06 1.78 7.83 -52.49 -0.41 1.37 16 22 C -0.05 -1.36 5.50 -17.43 -0.10 -1.45 16 23 N -0.94 -29.49 13.70 55.49 0.76 -28.73 16 24 Si 1.08 26.14 29.92 -169.99 -5.09 21.05 16 25 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 26 H -0.30 -6.83 7.11 56.52 0.40 -6.43 16 27 H -0.30 -6.82 7.11 56.52 0.40 -6.42 16 28 C -0.12 -1.43 5.97 -25.07 -0.15 -1.58 16 29 C 0.00 0.04 9.39 -38.87 -0.37 -0.32 16 30 H 0.04 0.13 8.14 -51.93 -0.42 -0.29 16 31 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.04 0.16 8.14 -51.93 -0.42 -0.27 16 33 H 0.06 0.30 8.09 -51.93 -0.42 -0.12 16 34 H 0.07 0.24 8.09 -51.93 -0.42 -0.18 16 35 H 0.16 0.80 8.06 -52.48 -0.42 0.38 16 36 H 0.16 0.97 6.42 -52.49 -0.34 0.63 16 37 H 0.40 2.98 6.43 -40.82 -0.26 2.72 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.06 0.83 7.92 -51.93 -0.41 0.41 16 40 H 0.07 1.04 7.93 -51.93 -0.41 0.62 16 41 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 42 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.02 0.39 7.99 -51.93 -0.41 -0.03 16 44 H 0.37 9.48 6.50 -40.82 -0.27 9.22 16 45 H 0.25 7.82 6.77 -40.82 -0.28 7.55 16 46 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.07 0.79 7.64 -51.93 -0.40 0.39 16 48 H 0.15 1.34 7.74 -52.49 -0.41 0.93 16 LS Contribution 395.97 15.07 5.97 5.97 Total: -1.00 -35.89 395.97 -8.72 -44.61 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -7.43 Total: 6.99 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: -1.92 Total: -7.47 kcal Atomic # 7 Polarization: -59.93 SS G_CDS: 0.03 Total: -59.89 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: -0.29 Total: -11.26 kcal Atomic # 14 Polarization: 26.14 SS G_CDS: -5.09 Total: 21.05 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.89 -8.72 -44.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486203364.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.400 kcal (2) G-P(sol) polarization free energy of solvation -35.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds