Wall clock time and date at job start Tue Mar 31 2020 17:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42907 * 113.99433 * 2 1 4 4 C 1.50703 * 109.46812 * 179.97438 * 3 2 1 5 5 C 1.38346 * 120.34711 * 89.99886 * 4 3 2 6 6 N 1.31924 * 121.08138 * 180.02562 * 5 4 3 7 7 C 1.31698 * 121.87955 * 359.97438 * 6 5 4 8 8 C 1.39521 * 120.56479 * 0.02562 * 7 6 5 9 9 C 1.47840 * 120.56166 * 180.02562 * 8 7 6 10 10 O 1.21548 * 120.00024 * 179.97438 * 9 8 7 11 11 N 1.34783 * 119.99688 * 0.02562 * 9 8 7 12 12 C 1.46496 * 119.99709 * 180.02562 * 11 9 8 13 13 H 1.08995 * 110.02111 * 326.38949 * 12 11 9 14 14 C 1.53882 * 110.07309 * 87.81040 * 12 11 9 15 15 C 1.54267 * 106.59905 * 119.30308 * 14 12 11 16 16 C 1.54889 * 104.19467 * 23.60979 * 15 14 12 17 17 H 1.08999 * 110.91491 * 80.44193 * 16 15 14 18 18 C 1.53001 * 110.75493 * 203.73936 * 16 15 14 19 19 N 1.46490 * 109.47264 * 288.32759 * 18 16 15 20 20 C 1.36935 * 120.00121 * 179.97438 * 19 18 16 21 21 H 1.07997 * 120.00139 * 0.02562 * 20 19 18 22 22 C 1.38816 * 120.00401 * 180.02562 * 20 19 18 23 23 N 1.31624 * 119.99569 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00172 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47055 * 180.02562 * 24 22 20 26 26 H 1.48505 * 109.46653 * 299.99639 * 24 22 20 27 27 H 1.48495 * 109.47483 * 60.00002 * 24 22 20 28 28 C 1.54271 * 110.02885 * 204.99850 * 12 11 9 29 29 C 1.38354 * 120.34722 * 270.30660 * 4 3 2 30 30 H 1.08999 * 109.47493 * 60.00367 * 1 2 3 31 31 H 1.09007 * 109.46811 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47538 * 299.99878 * 1 2 3 33 33 H 1.08997 * 109.46973 * 59.99876 * 3 2 1 34 34 H 1.09000 * 109.47165 * 299.99898 * 3 2 1 35 35 H 1.08005 * 119.46214 * 359.97438 * 5 4 3 36 36 H 1.08001 * 119.71740 * 179.97438 * 7 6 5 37 37 H 0.97005 * 119.99773 * 359.97438 * 11 9 8 38 38 H 1.09004 * 110.02606 * 238.58771 * 14 12 11 39 39 H 1.09002 * 110.03061 * 359.96704 * 14 12 11 40 40 H 1.08991 * 110.48623 * 264.93368 * 15 14 12 41 41 H 1.09000 * 110.48373 * 142.28652 * 15 14 12 42 42 H 1.09003 * 109.46836 * 168.32466 * 18 16 15 43 43 H 1.08999 * 109.47071 * 48.33505 * 18 16 15 44 44 H 0.97000 * 120.00577 * 0.02562 * 19 18 16 45 45 H 0.97001 * 119.99885 * 359.97438 * 23 22 20 46 46 H 1.08998 * 110.48457 * 98.37987 * 28 12 11 47 47 H 1.08997 * 110.48626 * 335.73699 * 28 12 11 48 48 H 1.07992 * 120.85939 * 359.97438 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5125 1.1866 0.0006 5 6 4.2098 1.1312 -1.1930 6 7 5.5247 1.0266 -1.2093 7 6 6.2319 0.9708 -0.0997 8 6 5.6038 1.0207 1.1451 9 6 6.3978 0.9586 2.3907 10 8 5.8400 1.0034 3.4698 11 7 7.7401 0.8534 2.3297 12 6 8.5268 0.7913 3.5639 13 1 8.0551 1.3967 4.3379 14 6 8.6511 -0.6673 4.0382 15 6 10.1573 -1.0008 4.0476 16 6 10.8507 0.3779 4.1797 17 1 10.8491 0.7165 5.2158 18 6 12.2783 0.3215 3.6322 19 7 13.1217 -0.4522 4.5464 20 6 14.4480 -0.6392 4.2616 21 1 14.8723 -0.2160 3.3632 22 6 15.2473 -1.3729 5.1276 23 7 14.7300 -1.8892 6.2223 24 14 17.0567 -1.6273 4.7394 25 1 17.6838 -2.4396 5.8129 26 1 17.1894 -2.3363 3.4413 27 1 17.7351 -0.3091 4.6552 28 6 9.9618 1.2933 3.3017 29 6 4.2083 1.1253 1.1949 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.6884 1.8464 0.8900 34 1 1.6885 1.8465 -0.8900 35 1 3.6687 1.1735 -2.1267 36 1 7.3071 0.8849 -0.1538 37 1 8.1851 0.8181 1.4685 38 1 8.2397 -0.7697 5.0424 39 1 8.1255 -1.3297 3.3503 40 1 10.4465 -1.4854 3.1152 41 1 10.4023 -1.6344 4.9000 42 1 12.6731 1.3335 3.5421 43 1 12.2728 -0.1548 2.6518 44 1 12.7407 -0.8328 5.3532 45 1 13.7905 -1.7567 6.4241 46 1 10.0642 2.3338 3.6098 47 1 10.2194 1.1791 2.2488 48 1 3.6890 1.1619 2.1411 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486203364.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:27 Heat of formation + Delta-G solvation = -68.229063 kcal Electronic energy + Delta-G solvation = -27341.801535 eV Core-core repulsion = 23395.533740 eV Total energy + Delta-G solvation = -3946.267795 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.88143 -40.64695 -39.22315 -38.69339 -36.78284 -35.12132 -34.08572 -33.39586 -32.55410 -30.08710 -29.11204 -28.40087 -26.52940 -26.22607 -25.28561 -24.18360 -23.79892 -21.94391 -21.52927 -20.75356 -19.34002 -18.95377 -18.18481 -17.71805 -17.40721 -17.34911 -16.81224 -16.59509 -16.34953 -16.10769 -15.99499 -15.69868 -15.26402 -15.06904 -14.88156 -14.68005 -14.36070 -14.23983 -13.96036 -13.63037 -13.36667 -13.01931 -12.91836 -12.84668 -12.67845 -12.57294 -12.39269 -12.09262 -11.87830 -11.81313 -11.71220 -11.54682 -11.39785 -11.18966 -11.03447 -10.89731 -10.75222 -10.52949 -10.37161 -10.11367 -9.08781 -8.39314 -5.32469 -0.51135 -0.01445 1.59019 1.67643 1.69279 1.85631 1.95021 2.56116 2.72658 3.02518 3.21543 3.40173 3.48836 3.50458 3.58582 3.68019 3.71320 3.79781 3.83961 3.98832 4.00337 4.25927 4.33398 4.41835 4.43591 4.48210 4.50891 4.52061 4.55016 4.56610 4.61078 4.68204 4.84441 4.86183 4.88769 4.93676 5.01026 5.06167 5.07451 5.13104 5.27267 5.39805 5.43436 5.50029 5.59790 6.14736 6.38034 6.50189 6.70700 7.04444 7.11282 8.02371 8.13170 9.12867 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.030026 B = 0.001705 C = 0.001669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.288120 B =16415.001962 C =16769.490359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.415 6.415 3 C 0.106 3.894 4 C -0.152 4.152 5 C 0.144 3.856 6 N -0.503 5.503 7 C 0.144 3.856 8 C -0.200 4.200 9 C 0.565 3.435 10 O -0.573 6.573 11 N -0.702 5.702 12 C 0.149 3.851 13 H 0.084 0.916 14 C -0.125 4.125 15 C -0.108 4.108 16 C -0.092 4.092 17 H 0.068 0.932 18 C 0.165 3.835 19 N -0.757 5.757 20 C -0.336 4.336 21 H 0.067 0.933 22 C -0.106 4.106 23 N -0.976 5.976 24 Si 1.129 2.871 25 H -0.294 1.294 26 H -0.277 1.277 27 H -0.277 1.277 28 C -0.107 4.107 29 C -0.007 4.007 30 H 0.060 0.940 31 H 0.091 0.909 32 H 0.050 0.950 33 H 0.071 0.929 34 H 0.091 0.909 35 H 0.189 0.811 36 H 0.184 0.816 37 H 0.414 0.586 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.047 0.953 42 H 0.019 0.981 43 H 0.023 0.977 44 H 0.360 0.640 45 H 0.243 0.757 46 H 0.086 0.914 47 H 0.093 0.907 48 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.630 9.525 -17.540 35.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.335 6.335 3 C 0.029 3.971 4 C -0.154 4.154 5 C -0.012 4.012 6 N -0.211 5.211 7 C -0.014 4.014 8 C -0.205 4.205 9 C 0.352 3.648 10 O -0.454 6.454 11 N -0.354 5.354 12 C 0.045 3.955 13 H 0.102 0.898 14 C -0.164 4.164 15 C -0.145 4.145 16 C -0.111 4.111 17 H 0.086 0.914 18 C 0.039 3.961 19 N -0.401 5.401 20 C -0.468 4.468 21 H 0.085 0.915 22 C -0.297 4.297 23 N -0.624 5.624 24 Si 0.953 3.047 25 H -0.220 1.220 26 H -0.203 1.203 27 H -0.203 1.203 28 C -0.145 4.145 29 C -0.033 4.033 30 H 0.078 0.922 31 H 0.110 0.890 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.109 0.891 35 H 0.206 0.794 36 H 0.201 0.799 37 H 0.252 0.748 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.065 0.935 42 H 0.037 0.963 43 H 0.041 0.959 44 H 0.192 0.808 45 H 0.053 0.947 46 H 0.105 0.895 47 H 0.111 0.889 48 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -27.970 8.787 -17.290 34.037 hybrid contribution -1.842 0.535 0.705 2.043 sum -29.812 9.322 -16.585 35.366 Atomic orbital electron populations 1.22952 0.78962 1.03830 1.01342 1.87932 1.21788 1.28072 1.95721 1.21360 0.87109 0.85265 1.03361 1.20786 0.97167 1.03916 0.93557 1.23419 0.89649 0.89442 0.98720 1.67855 1.08722 1.13611 1.30917 1.23382 1.01476 0.90432 0.86105 1.20927 0.95245 1.09797 0.94567 1.18266 0.82578 0.75606 0.88341 1.90771 1.71655 1.51811 1.31143 1.45986 1.05581 1.73414 1.10445 1.21542 0.91294 0.96221 0.86458 0.89756 1.22501 0.95881 0.96279 1.01716 1.22264 0.94245 0.96618 1.01421 1.22159 0.93387 0.95974 0.99605 0.91384 1.20746 0.89283 0.93622 0.92418 1.42588 1.07295 1.64297 1.25964 1.20431 0.87941 1.30886 1.07498 0.91486 1.27239 1.09729 0.97924 0.94794 1.70996 1.14064 1.49762 1.27576 0.82622 0.70087 0.76626 0.75360 1.21970 1.20313 1.20300 1.22532 0.91174 0.99573 1.01246 1.21759 0.92596 0.89466 0.99522 0.92165 0.89029 0.93097 0.91051 0.89068 0.79393 0.79934 0.74768 0.91746 0.91193 0.91697 0.93456 0.96277 0.95869 0.80822 0.94656 0.89534 0.88883 0.83987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 11.01 113.37 1.25 1.43 16 2 O -0.42 -5.83 10.69 -148.98 -1.59 -7.42 16 3 C 0.11 1.03 6.08 71.24 0.43 1.46 16 4 C -0.15 -2.11 5.52 -19.81 -0.11 -2.22 16 5 C 0.14 1.90 10.85 84.70 0.92 2.82 16 6 N -0.50 -8.26 10.35 -194.75 -2.01 -10.28 16 7 C 0.14 2.20 10.71 85.02 0.91 3.11 16 8 C -0.20 -3.70 5.89 -19.99 -0.12 -3.82 16 9 C 0.56 12.68 7.78 86.78 0.67 13.35 16 10 O -0.57 -17.31 16.08 -3.87 -0.06 -17.37 16 11 N -0.70 -12.86 4.94 -441.96 -2.18 -15.04 16 12 C 0.15 3.29 3.24 45.72 0.15 3.44 16 13 H 0.08 2.08 7.56 -2.39 -0.02 2.06 16 14 C -0.13 -3.13 6.59 31.32 0.21 -2.93 16 15 C -0.11 -3.19 6.20 31.67 0.20 -3.00 16 16 C -0.09 -2.78 2.91 -9.50 -0.03 -2.81 16 17 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 18 C 0.17 6.46 5.70 86.38 0.49 6.95 16 19 N -0.76 -38.66 5.52 -343.47 -1.90 -40.55 16 20 C -0.34 -19.20 9.99 84.03 0.84 -18.36 16 21 H 0.07 3.71 7.83 -2.91 -0.02 3.68 16 22 C -0.11 -6.23 5.50 84.86 0.47 -5.76 16 23 N -0.98 -62.01 13.70 21.65 0.30 -61.71 16 24 Si 1.13 52.30 29.92 68.60 2.05 54.35 16 25 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 26 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 27 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 28 C -0.11 -2.30 5.97 31.67 0.19 -2.11 16 29 C -0.01 -0.12 9.39 22.73 0.21 0.09 16 30 H 0.06 0.23 8.14 -2.39 -0.02 0.21 16 31 H 0.09 0.58 8.14 -2.38 -0.02 0.56 16 32 H 0.05 0.29 8.14 -2.39 -0.02 0.27 16 33 H 0.07 0.57 8.09 -2.39 -0.02 0.55 16 34 H 0.09 0.40 8.09 -2.39 -0.02 0.38 16 35 H 0.19 1.31 8.06 -2.91 -0.02 1.28 16 36 H 0.18 1.74 6.42 -2.91 -0.02 1.72 16 37 H 0.41 5.11 6.43 -92.70 -0.60 4.51 16 38 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.07 1.70 7.92 -2.39 -0.02 1.68 16 40 H 0.06 1.95 7.93 -2.39 -0.02 1.94 16 41 H 0.05 1.59 8.14 -2.39 -0.02 1.58 16 42 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.02 0.90 7.99 -2.39 -0.02 0.88 16 44 H 0.36 19.15 6.50 -92.71 -0.60 18.54 16 45 H 0.24 15.42 6.77 -92.71 -0.63 14.79 16 46 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 47 H 0.09 1.68 7.64 -2.39 -0.02 1.66 16 48 H 0.14 2.63 7.74 -2.91 -0.02 2.60 16 Total: -1.00 -77.95 395.97 1.20 -76.75 By element: Atomic # 1 Polarization: 29.71 SS G_CDS: -0.08 Total: 29.63 kcal Atomic # 6 Polarization: -15.04 SS G_CDS: 6.68 Total: -8.36 kcal Atomic # 7 Polarization: -121.79 SS G_CDS: -5.80 Total: -127.59 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: -1.65 Total: -24.79 kcal Atomic # 14 Polarization: 52.30 SS G_CDS: 2.05 Total: 54.35 kcal Total: -77.95 1.20 -76.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486203364.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.518 kcal (2) G-P(sol) polarization free energy of solvation -77.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds