Wall clock time and date at job start Tue Mar 31 2020 17:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35905 * 117.00205 * 2 1 4 4 C 1.39134 * 120.47430 * 179.97438 * 3 2 1 5 5 C 1.38545 * 118.37662 * 180.02562 * 4 3 2 6 6 C 1.38252 * 119.21921 * 359.97438 * 5 4 3 7 7 C 1.50701 * 119.55641 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.46906 * 125.00428 * 7 6 5 9 9 O 1.21280 * 120.00058 * 359.97438 * 8 7 6 10 10 N 1.34775 * 119.99856 * 180.02562 * 8 7 6 11 11 C 1.46497 * 120.00083 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.47062 * 180.02562 * 11 10 8 13 13 C 1.53000 * 109.46967 * 180.02562 * 12 11 10 14 14 H 1.08999 * 110.78170 * 308.24051 * 13 12 11 15 15 C 1.55158 * 110.72145 * 184.99928 * 13 12 11 16 16 C 1.54909 * 101.61642 * 206.15534 * 15 13 12 17 17 N 1.47423 * 104.83351 * 36.99324 * 16 15 13 18 18 C 1.36936 * 125.64594 * 155.90840 * 17 16 15 19 19 H 1.08007 * 120.00033 * 179.97438 * 18 17 16 20 20 C 1.38813 * 120.00281 * 359.97114 * 18 17 16 21 21 N 1.31616 * 120.00050 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99983 * 180.02562 * 20 18 17 23 23 H 1.48510 * 109.47129 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47513 * 119.99988 * 22 20 18 25 25 H 1.48502 * 109.47290 * 240.00176 * 22 20 18 26 26 C 1.47016 * 108.70440 * 335.86643 * 17 16 15 27 27 N 1.31845 * 120.88838 * 0.25965 * 6 5 4 28 28 C 1.31848 * 121.77944 * 359.46821 * 27 6 5 29 29 H 1.09006 * 109.46514 * 59.99737 * 1 2 3 30 30 H 1.08994 * 109.47257 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46574 * 300.00064 * 1 2 3 32 32 H 1.07999 * 120.81309 * 0.04711 * 4 3 2 33 33 H 1.07997 * 120.39366 * 179.97438 * 5 4 3 34 34 H 1.08998 * 109.46913 * 5.00117 * 7 6 5 35 35 H 1.09005 * 109.47036 * 244.99905 * 7 6 5 36 36 H 0.97002 * 120.00212 * 359.97438 * 10 8 7 37 37 H 1.09007 * 109.46821 * 60.00505 * 11 10 8 38 38 H 1.08996 * 109.47722 * 300.00172 * 11 10 8 39 39 H 1.08996 * 109.47404 * 60.00468 * 12 11 10 40 40 H 1.09005 * 109.47092 * 300.00001 * 12 11 10 41 41 H 1.09002 * 111.00366 * 88.06052 * 15 13 12 42 42 H 1.09002 * 111.00429 * 324.25114 * 15 13 12 43 43 H 1.09000 * 110.36449 * 155.82966 * 16 15 13 44 44 H 1.09002 * 110.36579 * 278.03887 * 16 15 13 45 45 H 0.96996 * 120.00056 * 180.02562 * 21 20 18 46 46 H 1.09000 * 109.88531 * 120.47268 * 26 17 16 47 47 H 1.08996 * 109.88671 * 241.49081 * 26 17 16 48 48 H 1.08004 * 119.66047 * 180.26954 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 3.4349 1.2952 0.0005 5 6 4.0183 2.5518 0.0011 6 6 3.2081 3.6720 0.0005 7 6 3.8346 5.0426 0.0016 8 6 3.3035 5.8386 -1.1625 9 8 2.4962 5.3418 -1.9189 10 7 3.7266 7.1024 -1.3637 11 6 3.2107 7.8761 -2.4957 12 6 3.8477 9.2672 -2.4952 13 6 3.3085 10.0754 -3.6771 14 1 3.4115 9.5163 -4.6071 15 6 4.0278 11.4465 -3.7783 16 6 2.9568 12.3086 -4.4921 17 7 1.6708 11.8485 -3.9373 18 6 0.5136 12.5794 -3.8929 19 1 -0.3801 12.1503 -3.4644 20 6 0.4892 13.8719 -4.3987 21 7 1.5781 14.3948 -4.9213 22 14 -1.0892 14.8691 -4.3374 23 1 -2.1622 14.0593 -3.7063 24 1 -0.8652 16.1020 -3.5407 25 1 -1.4952 15.2384 -5.7173 26 6 1.8361 10.4748 -3.4405 27 7 1.8946 3.5574 0.0046 28 6 1.3003 2.3805 -0.0010 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 4.0433 0.4028 0.0002 33 1 5.0933 2.6551 0.0019 34 1 4.9169 4.9474 -0.0867 35 1 3.5896 5.5533 0.9329 36 1 4.3726 7.4997 -0.7589 37 1 2.1285 7.9716 -2.4074 38 1 3.4556 7.3651 -3.4268 39 1 4.9299 9.1714 -2.5837 40 1 3.6032 9.7785 -1.5641 41 1 4.9327 11.3694 -4.3811 42 1 4.2529 11.8436 -2.7885 43 1 3.1099 13.3646 -4.2695 44 1 2.9897 12.1399 -5.5685 45 1 1.5611 15.2980 -5.2743 46 1 1.6089 10.4359 -2.3752 47 1 1.1745 9.8013 -3.9853 48 1 0.2216 2.3264 -0.0018 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494042212.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:45 Heat of formation + Delta-G solvation = -17.711211 kcal Electronic energy + Delta-G solvation = -27262.694829 eV Core-core repulsion = 23318.617652 eV Total energy + Delta-G solvation = -3944.077177 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.06680 -39.66967 -38.42613 -37.71978 -35.13327 -33.09333 -32.73417 -32.64740 -30.79774 -29.10459 -28.47173 -27.58207 -26.29910 -24.64599 -23.75614 -22.76766 -22.02560 -20.60998 -20.05187 -19.25986 -18.54218 -17.55509 -16.96238 -16.87469 -16.51974 -16.23257 -15.71770 -15.43179 -15.15925 -14.61700 -14.54795 -14.52500 -14.13298 -13.70413 -13.64058 -13.33199 -13.21935 -12.55363 -12.46315 -12.42421 -12.29870 -12.21070 -11.82537 -11.74353 -11.61989 -11.53370 -11.03328 -10.86758 -10.74189 -10.13349 -10.09509 -10.01859 -9.91902 -9.81223 -9.71627 -9.60968 -9.41163 -9.01886 -8.68280 -8.60591 -6.76978 -5.60725 -3.01737 0.77313 0.97963 2.66207 2.76218 3.08568 3.42506 3.48105 3.50690 3.54992 3.97158 4.30125 4.32288 4.53119 4.53647 4.69719 4.72227 4.82220 4.92655 5.03332 5.06228 5.08299 5.12975 5.16337 5.27261 5.35188 5.52481 5.59233 5.64456 5.68504 5.72531 5.84868 5.95484 6.06623 6.13401 6.24246 6.28162 6.43588 6.48433 6.65398 6.68976 6.79823 6.82808 7.03553 7.48296 7.57744 7.68924 7.73666 7.90735 8.24970 8.41720 9.27666 9.88763 10.54316 11.43315 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019821 B = 0.001763 C = 0.001649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.270374 B =15875.144149 C =16978.710608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.314 6.314 3 C 0.072 3.928 4 C -0.109 4.109 5 C -0.126 4.126 6 C 0.106 3.894 7 C -0.088 4.088 8 C 0.514 3.486 9 O -0.523 6.523 10 N -0.732 5.732 11 C 0.119 3.881 12 C -0.115 4.115 13 C -0.098 4.098 14 H 0.072 0.928 15 C -0.138 4.138 16 C 0.151 3.849 17 N -0.606 5.606 18 C -0.219 4.219 19 H 0.077 0.923 20 C -0.014 4.014 21 N -0.923 5.923 22 Si 0.914 3.086 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C 0.140 3.860 27 N -0.419 5.419 28 C 0.027 3.973 29 H 0.059 0.941 30 H 0.103 0.897 31 H 0.058 0.942 32 H 0.142 0.858 33 H 0.142 0.858 34 H 0.108 0.892 35 H 0.111 0.889 36 H 0.399 0.601 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.056 0.944 42 H 0.059 0.941 43 H 0.105 0.895 44 H 0.010 0.990 45 H 0.250 0.750 46 H 0.022 0.978 47 H 0.019 0.981 48 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.342 -26.525 13.195 30.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.226 6.226 3 C 0.024 3.976 4 C -0.136 4.136 5 C -0.146 4.146 6 C -0.033 4.033 7 C -0.128 4.128 8 C 0.299 3.701 9 O -0.398 6.398 10 N -0.385 5.385 11 C -0.004 4.004 12 C -0.153 4.153 13 C -0.117 4.117 14 H 0.090 0.910 15 C -0.177 4.177 16 C 0.026 3.974 17 N -0.331 5.331 18 C -0.347 4.347 19 H 0.095 0.905 20 C -0.209 4.209 21 N -0.572 5.572 22 Si 0.744 3.256 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.218 1.218 26 C 0.014 3.986 27 N -0.128 5.128 28 C -0.132 4.132 29 H 0.078 0.922 30 H 0.121 0.879 31 H 0.077 0.923 32 H 0.160 0.840 33 H 0.160 0.840 34 H 0.126 0.874 35 H 0.129 0.871 36 H 0.232 0.768 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.123 0.877 44 H 0.028 0.972 45 H 0.061 0.939 46 H 0.040 0.960 47 H 0.037 0.963 48 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 7.199 -26.146 12.574 29.893 hybrid contribution -0.296 0.024 0.175 0.345 sum 6.903 -26.122 12.749 29.876 Atomic orbital electron populations 1.23141 0.77828 1.04376 1.01832 1.86059 1.21807 1.26112 1.88609 1.20109 0.93324 0.85788 0.98354 1.20857 0.91668 0.98735 1.02308 1.21785 1.01231 0.91637 0.99903 1.20443 0.89320 0.94267 0.99278 1.20539 1.01050 0.91911 0.99319 1.20256 0.81834 0.81794 0.86204 1.90747 1.32547 1.69835 1.46625 1.46050 1.46913 1.14128 1.31367 1.21470 0.99420 0.91074 0.88439 1.21784 0.99843 0.93815 0.99905 1.22102 0.96784 0.96108 0.96741 0.91003 1.23038 0.98538 0.95331 1.00805 1.21916 0.82006 0.99874 0.93608 1.44530 1.08448 1.10051 1.70119 1.19150 0.88005 0.94684 1.32896 0.90494 1.24788 0.97671 0.97387 1.01095 1.69816 1.25911 1.15441 1.46072 0.86001 0.82308 0.80028 0.77215 1.20538 1.21790 1.21810 1.21374 0.92847 0.87815 0.96575 1.67298 1.11436 1.26336 1.07765 1.22901 1.00567 0.86899 1.02857 0.92191 0.87870 0.92311 0.83980 0.83994 0.87359 0.87108 0.76779 0.91078 0.91702 0.91675 0.91181 0.92533 0.92215 0.87721 0.97177 0.93877 0.95984 0.96298 0.82555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.82 101.05 0.99 1.11 16 2 O -0.31 -2.71 10.51 -19.44 -0.20 -2.91 16 3 C 0.07 0.69 6.71 -39.07 -0.26 0.43 16 4 C -0.11 -0.92 10.13 -39.14 -0.40 -1.32 16 5 C -0.13 -1.02 9.71 -39.46 -0.38 -1.40 16 6 C 0.11 1.11 5.76 -82.58 -0.48 0.64 16 7 C -0.09 -0.71 6.10 -29.03 -0.18 -0.89 16 8 C 0.51 6.30 7.76 -10.99 -0.09 6.22 16 9 O -0.52 -8.98 15.34 5.56 0.09 -8.90 16 10 N -0.73 -7.72 5.56 -60.29 -0.33 -8.05 16 11 C 0.12 1.56 5.56 -4.04 -0.02 1.54 16 12 C -0.12 -1.48 4.73 -26.73 -0.13 -1.61 16 13 C -0.10 -1.67 2.93 -88.75 -0.26 -1.93 16 14 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 15 C -0.14 -2.59 6.53 -24.58 -0.16 -2.75 16 16 C 0.15 3.73 5.89 -2.53 -0.01 3.71 16 17 N -0.61 -15.97 3.39 -170.04 -0.58 -16.55 16 18 C -0.22 -6.28 10.27 -15.06 -0.15 -6.44 16 19 H 0.08 2.15 7.83 -52.48 -0.41 1.74 16 20 C -0.01 -0.41 5.49 -17.43 -0.10 -0.51 16 21 N -0.92 -27.41 10.09 55.49 0.56 -26.85 16 22 Si 0.91 22.55 29.55 -169.99 -5.02 17.53 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 26 C 0.14 2.99 6.24 -3.04 -0.02 2.98 16 27 N -0.42 -5.39 9.23 -9.35 -0.09 -5.47 16 28 C 0.03 0.29 10.22 -17.37 -0.18 0.11 16 29 H 0.06 0.30 7.68 -51.93 -0.40 -0.10 16 30 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.25 7.68 -51.93 -0.40 -0.15 16 32 H 0.14 0.88 8.06 -52.49 -0.42 0.45 16 33 H 0.14 0.67 7.94 -52.49 -0.42 0.25 16 34 H 0.11 0.49 7.87 -51.93 -0.41 0.08 16 35 H 0.11 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.40 2.85 8.47 -40.82 -0.35 2.50 16 37 H 0.07 1.10 7.69 -51.93 -0.40 0.70 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.07 0.91 7.93 -51.93 -0.41 0.50 16 41 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.06 1.09 8.05 -51.93 -0.42 0.67 16 43 H 0.11 2.90 5.88 -51.93 -0.31 2.59 16 44 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 45 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 46 H 0.02 0.47 7.68 -51.93 -0.40 0.07 16 47 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 48 H 0.16 1.36 6.32 -52.48 -0.33 1.03 16 LS Contribution 391.36 15.07 5.90 5.90 Total: -1.00 -37.00 391.36 -9.09 -46.09 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -7.58 Total: -0.66 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: -1.82 Total: -0.11 kcal Atomic # 7 Polarization: -56.49 SS G_CDS: -0.44 Total: -56.92 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: -0.12 Total: -11.81 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -37.00 -9.09 -46.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494042212.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.375 kcal (2) G-P(sol) polarization free energy of solvation -37.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds