Wall clock time and date at job start Tue Mar 31 2020 17:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35905 * 117.00205 * 2 1 4 4 C 1.39134 * 120.47430 * 179.97438 * 3 2 1 5 5 C 1.38545 * 118.37662 * 180.02562 * 4 3 2 6 6 C 1.38252 * 119.21921 * 359.97438 * 5 4 3 7 7 C 1.50701 * 119.55641 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.46906 * 125.00428 * 7 6 5 9 9 O 1.21280 * 120.00058 * 359.97438 * 8 7 6 10 10 N 1.34775 * 119.99856 * 180.02562 * 8 7 6 11 11 C 1.46497 * 120.00083 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.47062 * 180.02562 * 11 10 8 13 13 C 1.53000 * 109.46967 * 180.02562 * 12 11 10 14 14 H 1.08999 * 110.78170 * 308.24051 * 13 12 11 15 15 C 1.55158 * 110.72145 * 184.99928 * 13 12 11 16 16 C 1.54909 * 101.61642 * 206.15534 * 15 13 12 17 17 N 1.47423 * 104.83351 * 36.99324 * 16 15 13 18 18 C 1.36936 * 125.64594 * 155.90840 * 17 16 15 19 19 H 1.08007 * 120.00033 * 179.97438 * 18 17 16 20 20 C 1.38813 * 120.00281 * 359.97114 * 18 17 16 21 21 N 1.31616 * 120.00050 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99983 * 180.02562 * 20 18 17 23 23 H 1.48510 * 109.47129 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47513 * 119.99988 * 22 20 18 25 25 H 1.48502 * 109.47290 * 240.00176 * 22 20 18 26 26 C 1.47016 * 108.70440 * 335.86643 * 17 16 15 27 27 N 1.31845 * 120.88838 * 0.25965 * 6 5 4 28 28 C 1.31848 * 121.77944 * 359.46821 * 27 6 5 29 29 H 1.09006 * 109.46514 * 59.99737 * 1 2 3 30 30 H 1.08994 * 109.47257 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46574 * 300.00064 * 1 2 3 32 32 H 1.07999 * 120.81309 * 0.04711 * 4 3 2 33 33 H 1.07997 * 120.39366 * 179.97438 * 5 4 3 34 34 H 1.08998 * 109.46913 * 5.00117 * 7 6 5 35 35 H 1.09005 * 109.47036 * 244.99905 * 7 6 5 36 36 H 0.97002 * 120.00212 * 359.97438 * 10 8 7 37 37 H 1.09007 * 109.46821 * 60.00505 * 11 10 8 38 38 H 1.08996 * 109.47722 * 300.00172 * 11 10 8 39 39 H 1.08996 * 109.47404 * 60.00468 * 12 11 10 40 40 H 1.09005 * 109.47092 * 300.00001 * 12 11 10 41 41 H 1.09002 * 111.00366 * 88.06052 * 15 13 12 42 42 H 1.09002 * 111.00429 * 324.25114 * 15 13 12 43 43 H 1.09000 * 110.36449 * 155.82966 * 16 15 13 44 44 H 1.09002 * 110.36579 * 278.03887 * 16 15 13 45 45 H 0.96996 * 120.00056 * 180.02562 * 21 20 18 46 46 H 1.09000 * 109.88531 * 120.47268 * 26 17 16 47 47 H 1.08996 * 109.88671 * 241.49081 * 26 17 16 48 48 H 1.08004 * 119.66047 * 180.26954 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 3.4349 1.2952 0.0005 5 6 4.0183 2.5518 0.0011 6 6 3.2081 3.6720 0.0005 7 6 3.8346 5.0426 0.0016 8 6 3.3035 5.8386 -1.1625 9 8 2.4962 5.3418 -1.9189 10 7 3.7266 7.1024 -1.3637 11 6 3.2107 7.8761 -2.4957 12 6 3.8477 9.2672 -2.4952 13 6 3.3085 10.0754 -3.6771 14 1 3.4115 9.5163 -4.6071 15 6 4.0278 11.4465 -3.7783 16 6 2.9568 12.3086 -4.4921 17 7 1.6708 11.8485 -3.9373 18 6 0.5136 12.5794 -3.8929 19 1 -0.3801 12.1503 -3.4644 20 6 0.4892 13.8719 -4.3987 21 7 1.5781 14.3948 -4.9213 22 14 -1.0892 14.8691 -4.3374 23 1 -2.1622 14.0593 -3.7063 24 1 -0.8652 16.1020 -3.5407 25 1 -1.4952 15.2384 -5.7173 26 6 1.8361 10.4748 -3.4405 27 7 1.8946 3.5574 0.0046 28 6 1.3003 2.3805 -0.0010 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 4.0433 0.4028 0.0002 33 1 5.0933 2.6551 0.0019 34 1 4.9169 4.9474 -0.0867 35 1 3.5896 5.5533 0.9329 36 1 4.3726 7.4997 -0.7589 37 1 2.1285 7.9716 -2.4074 38 1 3.4556 7.3651 -3.4268 39 1 4.9299 9.1714 -2.5837 40 1 3.6032 9.7785 -1.5641 41 1 4.9327 11.3694 -4.3811 42 1 4.2529 11.8436 -2.7885 43 1 3.1099 13.3646 -4.2695 44 1 2.9897 12.1399 -5.5685 45 1 1.5611 15.2980 -5.2743 46 1 1.6089 10.4359 -2.3752 47 1 1.1745 9.8013 -3.9853 48 1 0.2216 2.3264 -0.0018 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494042212.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:44 Heat of formation + Delta-G solvation = -44.092227 kcal Electronic energy + Delta-G solvation = -27263.838796 eV Core-core repulsion = 23318.617652 eV Total energy + Delta-G solvation = -3945.221143 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.73547 -40.57347 -39.44145 -38.98742 -36.38569 -34.73457 -33.50212 -33.38032 -32.37462 -30.73761 -29.28546 -28.34171 -27.70128 -26.41452 -24.46717 -23.77176 -23.03569 -21.94418 -21.54458 -20.65039 -19.14303 -18.89713 -18.27818 -17.76650 -17.36664 -17.02320 -16.80608 -16.64382 -16.26499 -16.25812 -15.56647 -15.27599 -15.08366 -15.04021 -14.70391 -14.27201 -14.09743 -13.94866 -13.78975 -13.53555 -13.35380 -13.17620 -13.08694 -12.88823 -12.81467 -12.76727 -12.68844 -12.32419 -12.19476 -11.98202 -11.78296 -11.54526 -11.41360 -11.24927 -10.86854 -10.75228 -10.64426 -10.32870 -10.00566 -9.35303 -8.88239 -7.78511 -5.22757 0.11523 0.31956 1.44361 1.45554 1.56141 1.77325 2.21537 2.26526 2.48375 2.84010 3.30224 3.34101 3.66161 3.73344 3.75298 3.78190 3.93903 3.96563 4.09627 4.20266 4.30594 4.32784 4.36533 4.38251 4.42209 4.55774 4.61353 4.65740 4.68321 4.72255 4.74017 4.76967 4.90943 4.98105 5.06248 5.11551 5.13975 5.21493 5.28458 5.43663 5.52228 5.53265 5.54791 5.69910 5.83601 6.20063 6.32061 6.68935 7.05306 7.11187 7.40924 7.78964 8.42803 9.23273 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019821 B = 0.001763 C = 0.001649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.270374 B =15875.144149 C =16978.710608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.325 6.325 3 C 0.064 3.936 4 C -0.117 4.117 5 C -0.116 4.116 6 C 0.081 3.919 7 C -0.079 4.079 8 C 0.509 3.491 9 O -0.581 6.581 10 N -0.717 5.717 11 C 0.126 3.874 12 C -0.098 4.098 13 C -0.085 4.085 14 H 0.076 0.924 15 C -0.120 4.120 16 C 0.148 3.852 17 N -0.629 5.629 18 C -0.240 4.240 19 H 0.075 0.925 20 C -0.069 4.069 21 N -0.948 5.948 22 Si 0.981 3.019 23 H -0.270 1.270 24 H -0.287 1.287 25 H -0.292 1.292 26 C 0.134 3.866 27 N -0.462 5.462 28 C 0.003 3.997 29 H 0.058 0.942 30 H 0.126 0.874 31 H 0.066 0.934 32 H 0.165 0.835 33 H 0.182 0.818 34 H 0.154 0.846 35 H 0.130 0.870 36 H 0.419 0.581 37 H 0.040 0.960 38 H 0.057 0.943 39 H 0.101 0.899 40 H 0.074 0.926 41 H 0.087 0.913 42 H 0.069 0.931 43 H 0.072 0.928 44 H -0.018 1.018 45 H 0.247 0.753 46 H 0.025 0.975 47 H 0.007 0.993 48 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.600 -27.822 14.826 33.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.237 6.237 3 C 0.017 3.983 4 C -0.143 4.143 5 C -0.135 4.135 6 C -0.058 4.058 7 C -0.119 4.119 8 C 0.296 3.704 9 O -0.460 6.460 10 N -0.371 5.371 11 C 0.002 3.998 12 C -0.136 4.136 13 C -0.104 4.104 14 H 0.094 0.906 15 C -0.159 4.159 16 C 0.023 3.977 17 N -0.355 5.355 18 C -0.370 4.370 19 H 0.093 0.907 20 C -0.261 4.261 21 N -0.598 5.598 22 Si 0.809 3.191 23 H -0.194 1.194 24 H -0.214 1.214 25 H -0.219 1.219 26 C 0.009 3.991 27 N -0.172 5.172 28 C -0.155 4.155 29 H 0.076 0.924 30 H 0.144 0.856 31 H 0.084 0.916 32 H 0.183 0.817 33 H 0.200 0.800 34 H 0.172 0.828 35 H 0.147 0.853 36 H 0.257 0.743 37 H 0.058 0.942 38 H 0.075 0.925 39 H 0.119 0.881 40 H 0.093 0.907 41 H 0.105 0.895 42 H 0.088 0.912 43 H 0.090 0.910 44 H 0.000 1.000 45 H 0.057 0.943 46 H 0.043 0.957 47 H 0.025 0.975 48 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 9.484 -27.455 14.249 32.354 hybrid contribution -1.042 0.379 -0.357 1.165 sum 8.442 -27.076 13.892 31.581 Atomic orbital electron populations 1.23376 0.76369 1.05965 1.02135 1.86042 1.23421 1.25736 1.88498 1.20281 0.94115 0.85720 0.98206 1.21286 0.91415 1.00019 1.01593 1.22196 1.02969 0.90561 0.97824 1.20967 0.89024 0.96133 0.99705 1.20663 1.03224 0.90159 0.97832 1.21048 0.80834 0.82007 0.86540 1.90730 1.35180 1.71104 1.48948 1.45866 1.46791 1.13585 1.30814 1.21196 0.97768 0.91646 0.89233 1.21620 1.01579 0.92479 0.97881 1.22029 0.93362 0.95994 0.99057 0.90558 1.22877 0.97611 0.94483 1.00919 1.21773 0.83713 0.99448 0.92742 1.44877 1.08434 1.11918 1.70284 1.19486 0.89109 0.95420 1.32953 0.90685 1.25647 1.00933 0.98441 1.01109 1.70067 1.27631 1.15427 1.46650 0.84974 0.78809 0.78372 0.76959 1.19424 1.21366 1.21881 1.21574 0.96019 0.85383 0.96130 1.67254 1.13234 1.27428 1.09233 1.23038 1.01151 0.87225 1.04101 0.92378 0.85609 0.91587 0.81698 0.80042 0.82816 0.85256 0.74349 0.94196 0.92465 0.88061 0.90695 0.89480 0.91211 0.91010 0.99999 0.94294 0.95686 0.97523 0.82165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.82 113.37 1.11 1.27 16 2 O -0.32 -5.48 10.51 -92.48 -0.97 -6.45 16 3 C 0.06 1.23 6.71 22.60 0.15 1.38 16 4 C -0.12 -1.77 10.13 22.56 0.23 -1.54 16 5 C -0.12 -1.57 9.71 22.35 0.22 -1.35 16 6 C 0.08 1.57 5.76 42.56 0.24 1.82 16 7 C -0.08 -1.05 6.10 29.10 0.18 -0.87 16 8 C 0.51 11.66 7.76 87.66 0.68 12.34 16 9 O -0.58 -20.17 15.34 -3.03 -0.05 -20.22 16 10 N -0.72 -13.28 5.56 -463.06 -2.57 -15.86 16 11 C 0.13 3.10 5.56 86.38 0.48 3.58 16 12 C -0.10 -2.20 4.73 30.60 0.14 -2.05 16 13 C -0.08 -2.75 2.93 -9.58 -0.03 -2.78 16 14 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 15 C -0.12 -4.27 6.53 31.99 0.21 -4.06 16 16 C 0.15 7.47 5.89 86.86 0.51 7.98 16 17 N -0.63 -33.93 3.39 -691.88 -2.35 -36.28 16 18 C -0.24 -14.15 10.27 84.03 0.86 -13.29 16 19 H 0.08 4.30 7.83 -2.91 -0.02 4.27 16 20 C -0.07 -4.05 5.49 84.86 0.47 -3.58 16 21 N -0.95 -57.83 10.09 21.65 0.22 -57.61 16 22 Si 0.98 47.13 29.55 68.60 2.03 49.16 16 23 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 24 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 25 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 26 C 0.13 5.78 6.24 86.75 0.54 6.32 16 27 N -0.46 -12.00 9.23 -183.48 -1.69 -13.70 16 28 C 0.00 0.07 10.22 84.80 0.87 0.93 16 29 H 0.06 0.60 7.68 -2.38 -0.02 0.59 16 30 H 0.13 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.07 0.56 7.68 -2.39 -0.02 0.55 16 32 H 0.17 1.61 8.06 -2.91 -0.02 1.59 16 33 H 0.18 0.84 7.94 -2.91 -0.02 0.82 16 34 H 0.15 0.58 7.87 -2.39 -0.02 0.56 16 35 H 0.13 1.25 8.14 -2.38 -0.02 1.23 16 36 H 0.42 4.28 8.47 -92.71 -0.79 3.49 16 37 H 0.04 1.24 7.69 -2.38 -0.02 1.22 16 38 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.07 1.68 7.93 -2.38 -0.02 1.66 16 41 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 42 H 0.07 2.36 8.05 -2.39 -0.02 2.34 16 43 H 0.07 4.10 5.88 -2.39 -0.01 4.09 16 44 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 45 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 46 H 0.03 1.06 7.68 -2.39 -0.02 1.05 16 47 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 48 H 0.16 3.05 6.32 -2.91 -0.02 3.03 16 Total: -1.00 -85.98 391.36 1.66 -84.32 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: 0.18 Total: 10.53 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: 6.87 Total: 6.10 kcal Atomic # 7 Polarization: -117.04 SS G_CDS: -6.40 Total: -123.44 kcal Atomic # 8 Polarization: -25.65 SS G_CDS: -1.02 Total: -26.67 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 2.03 Total: 49.16 kcal Total: -85.98 1.66 -84.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494042212.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.230 kcal (2) G-P(sol) polarization free energy of solvation -85.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds