Wall clock time and date at job start Tue Mar 31 2020 17:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35920 * 116.99541 * 2 1 4 4 C 1.39134 * 120.47839 * 0.21003 * 3 2 1 5 5 C 1.38530 * 118.37700 * 180.26175 * 4 3 2 6 6 C 1.38251 * 119.22202 * 359.75703 * 5 4 3 7 7 N 1.31850 * 120.88596 * 0.02562 * 6 5 4 8 8 C 1.31839 * 121.78137 * 359.97438 * 7 6 5 9 9 C 1.50701 * 119.66042 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.46906 * 90.00454 * 9 8 7 11 11 O 1.21280 * 120.00058 * 359.97438 * 10 9 8 12 12 N 1.34775 * 119.99856 * 180.02562 * 10 9 8 13 13 C 1.46497 * 120.00083 * 179.97438 * 12 10 9 14 14 C 1.53005 * 109.47062 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.46967 * 180.02562 * 14 13 12 16 16 H 1.08999 * 110.78170 * 308.24051 * 15 14 13 17 17 C 1.55158 * 110.72145 * 184.99928 * 15 14 13 18 18 C 1.54909 * 101.61642 * 206.15534 * 17 15 14 19 19 N 1.47423 * 104.83351 * 36.99324 * 18 17 15 20 20 C 1.36936 * 125.64594 * 155.90840 * 19 18 17 21 21 H 1.08007 * 120.00033 * 179.97438 * 20 19 18 22 22 C 1.38813 * 120.00281 * 359.97114 * 20 19 18 23 23 N 1.31616 * 120.00050 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99983 * 180.02562 * 22 20 19 25 25 H 1.48510 * 109.47129 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47513 * 119.99988 * 24 22 20 27 27 H 1.48502 * 109.47290 * 240.00176 * 24 22 20 28 28 C 1.47016 * 108.70440 * 335.86643 * 19 18 17 29 29 H 1.08992 * 109.47247 * 59.99789 * 1 2 3 30 30 H 1.09001 * 109.46837 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46778 * 299.99653 * 1 2 3 32 32 H 1.08001 * 120.80909 * 0.02562 * 4 3 2 33 33 H 1.08008 * 120.38972 * 179.72894 * 5 4 3 34 34 H 1.08002 * 119.56339 * 179.97438 * 6 5 4 35 35 H 1.08998 * 109.46913 * 330.00142 * 9 8 7 36 36 H 1.09005 * 109.47036 * 209.99930 * 9 8 7 37 37 H 0.97002 * 120.00212 * 359.97438 * 12 10 9 38 38 H 1.09007 * 109.46821 * 60.00505 * 13 12 10 39 39 H 1.08996 * 109.47722 * 300.00172 * 13 12 10 40 40 H 1.08996 * 109.47404 * 60.00468 * 14 13 12 41 41 H 1.09005 * 109.47092 * 300.00001 * 14 13 12 42 42 H 1.09002 * 111.00366 * 88.06052 * 17 15 14 43 43 H 1.09002 * 111.00429 * 324.25114 * 17 15 14 44 44 H 1.09000 * 110.36449 * 155.82966 * 18 17 15 45 45 H 1.09002 * 110.36579 * 278.03887 * 18 17 15 46 46 H 0.96996 * 120.00056 * 180.02562 * 23 22 20 47 47 H 1.09000 * 109.88531 * 120.47268 * 28 19 18 48 48 H 1.08996 * 109.88671 * 241.49081 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2979 2.3842 0.0044 5 6 1.9715 3.5947 -0.0014 6 6 3.3540 3.5977 -0.0061 7 7 4.0333 2.4677 -0.0057 8 6 3.4306 1.2952 -0.0003 9 6 4.2543 0.0332 -0.0007 10 6 4.5347 -0.3840 1.4200 11 8 4.1081 0.2784 2.3420 12 7 5.2604 -1.4928 1.6659 13 6 5.5335 -1.8981 3.0470 14 6 6.3708 -3.1787 3.0466 15 6 6.6554 -3.6023 4.4889 16 1 7.0727 -2.7732 5.0604 17 6 7.6074 -4.8270 4.5237 18 6 7.2259 -5.4804 5.8754 19 7 5.7676 -5.2946 5.9862 20 6 4.9190 -6.0681 6.7323 21 1 3.8615 -5.8489 6.7478 22 6 5.4177 -7.1339 7.4686 23 7 6.7064 -7.4008 7.4501 24 14 4.2599 -8.1894 8.4858 25 1 2.8711 -7.6841 8.3384 26 1 4.3282 -9.5956 8.0135 27 1 4.6597 -8.1271 9.9146 28 6 5.3755 -4.1408 5.1638 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.2184 2.3518 0.0083 33 1 1.4231 4.5252 -0.0026 34 1 3.8848 4.5383 -0.0110 35 1 5.1960 0.2142 -0.5189 36 1 3.7054 -0.7588 -0.5103 37 1 5.6019 -2.0224 0.9285 38 1 4.5918 -2.0793 3.5654 39 1 6.0821 -1.1059 3.5565 40 1 7.3123 -2.9971 2.5284 41 1 5.8225 -3.9711 2.5370 42 1 8.6506 -4.5111 4.5231 43 1 7.4055 -5.5026 3.6924 44 1 7.4735 -6.5419 5.8669 45 1 7.7374 -4.9789 6.6970 46 1 7.0548 -8.1458 7.9643 47 1 4.6600 -4.4536 4.4033 48 1 4.9330 -3.3695 5.7940 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494044664.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:51 Heat of formation + Delta-G solvation = -19.297628 kcal Electronic energy + Delta-G solvation = -27804.623579 eV Core-core repulsion = 23860.477610 eV Total energy + Delta-G solvation = -3944.145969 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.13519 -39.48613 -38.42719 -37.74577 -35.15305 -33.47203 -32.96263 -31.77455 -30.81789 -29.15975 -28.44137 -27.77809 -26.35574 -24.64972 -23.20802 -23.02766 -22.04710 -20.61603 -20.04600 -19.25501 -18.44893 -17.48423 -17.16681 -16.89397 -16.63323 -16.09558 -15.67758 -15.55723 -15.02998 -14.71258 -14.56257 -14.25401 -14.09147 -13.78132 -13.64221 -13.47094 -13.25083 -12.62476 -12.46751 -12.27918 -12.18494 -11.83915 -11.81512 -11.71343 -11.61816 -11.52926 -11.02694 -10.86557 -10.73942 -10.19324 -10.09837 -10.02087 -9.90708 -9.88855 -9.76490 -9.68988 -9.40955 -9.01316 -8.64831 -8.60506 -6.76870 -5.60651 -3.01718 0.77696 0.96591 2.67011 2.81856 3.08663 3.42247 3.47674 3.50306 3.57662 3.97632 4.25965 4.37739 4.53223 4.61686 4.73526 4.77931 4.79263 4.92888 5.02319 5.09431 5.11298 5.14157 5.18945 5.36005 5.46500 5.52754 5.65210 5.66805 5.70169 5.75211 5.86365 5.96009 6.08101 6.10246 6.25709 6.29323 6.44341 6.49470 6.66445 6.69927 6.82957 6.83437 7.04310 7.49229 7.58390 7.68795 7.69561 7.91125 8.23887 8.41946 9.27677 9.88802 10.54511 11.43388 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.018310 B = 0.002011 C = 0.001877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.828420 B =13919.664146 C =14910.299006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.306 6.306 3 C 0.093 3.907 4 C -0.165 4.165 5 C -0.134 4.134 6 C 0.063 3.937 7 N -0.439 5.439 8 C 0.127 3.873 9 C -0.087 4.087 10 C 0.521 3.479 11 O -0.535 6.535 12 N -0.729 5.729 13 C 0.119 3.881 14 C -0.116 4.116 15 C -0.098 4.098 16 H 0.072 0.928 17 C -0.138 4.138 18 C 0.151 3.849 19 N -0.606 5.606 20 C -0.219 4.219 21 H 0.077 0.923 22 C -0.014 4.014 23 N -0.923 5.923 24 Si 0.914 3.086 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 C 0.140 3.860 29 H 0.055 0.945 30 H 0.105 0.895 31 H 0.057 0.943 32 H 0.139 0.861 33 H 0.137 0.863 34 H 0.159 0.841 35 H 0.112 0.888 36 H 0.113 0.887 37 H 0.400 0.600 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.056 0.944 43 H 0.059 0.941 44 H 0.105 0.895 45 H 0.010 0.990 46 H 0.251 0.749 47 H 0.022 0.978 48 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.821 18.959 -21.603 29.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.218 6.218 3 C 0.045 3.955 4 C -0.192 4.192 5 C -0.154 4.154 6 C -0.094 4.094 7 N -0.148 5.148 8 C -0.014 4.014 9 C -0.127 4.127 10 C 0.306 3.694 11 O -0.411 6.411 12 N -0.381 5.381 13 C -0.004 4.004 14 C -0.154 4.154 15 C -0.117 4.117 16 H 0.090 0.910 17 C -0.177 4.177 18 C 0.026 3.974 19 N -0.332 5.332 20 C -0.347 4.347 21 H 0.095 0.905 22 C -0.209 4.209 23 N -0.572 5.572 24 Si 0.744 3.256 25 H -0.206 1.206 26 H -0.218 1.218 27 H -0.218 1.218 28 C 0.014 3.986 29 H 0.074 0.926 30 H 0.123 0.877 31 H 0.076 0.924 32 H 0.157 0.843 33 H 0.155 0.845 34 H 0.176 0.824 35 H 0.130 0.870 36 H 0.131 0.869 37 H 0.234 0.766 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.123 0.877 45 H 0.028 0.972 46 H 0.061 0.939 47 H 0.040 0.960 48 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -7.171 19.091 -20.771 29.109 hybrid contribution -1.681 -0.519 0.334 1.790 sum -8.851 18.572 -20.438 28.999 Atomic orbital electron populations 1.23133 0.77983 1.04552 1.01318 1.86110 1.21671 1.25839 1.88174 1.19844 0.93072 0.85279 0.97293 1.21666 1.00778 0.92130 1.04607 1.21977 0.95770 0.98230 0.99382 1.22595 0.91451 0.96275 0.99112 1.67437 1.40041 0.97518 1.09810 1.19903 0.87727 0.93373 1.00383 1.20446 1.01715 0.94658 0.95893 1.20260 0.77965 0.80466 0.90715 1.90721 1.50946 1.53207 1.46264 1.46015 1.55195 1.27365 1.09543 1.21483 1.00426 0.96663 0.81858 1.21788 0.99369 0.96058 0.98156 1.22100 0.97766 0.98101 0.93747 0.90979 1.23038 0.97134 0.96244 1.01295 1.21916 0.83451 1.02184 0.89850 1.44534 1.03963 1.31025 1.53650 1.19144 0.89852 1.06292 1.19448 0.90520 1.24789 0.96198 0.99245 1.00706 1.69817 1.10810 1.31300 1.45304 0.86003 0.79641 0.80159 0.79754 1.20561 1.21783 1.21799 1.21376 0.93935 0.90090 0.93220 0.92596 0.87710 0.92427 0.84278 0.84479 0.82396 0.86972 0.86895 0.76647 0.91123 0.91606 0.91597 0.91164 0.92506 0.92208 0.87721 0.97168 0.93865 0.95995 0.96314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.83 101.05 0.99 1.15 16 2 O -0.31 -3.11 9.54 -19.49 -0.19 -3.29 16 3 C 0.09 1.01 6.67 -39.07 -0.26 0.75 16 4 C -0.17 -1.43 9.14 -39.14 -0.36 -1.79 16 5 C -0.13 -1.05 10.11 -39.47 -0.40 -1.45 16 6 C 0.06 0.59 11.18 -17.54 -0.20 0.39 16 7 N -0.44 -5.31 10.27 -9.35 -0.10 -5.41 16 8 C 0.13 1.51 5.29 -82.41 -0.44 1.07 16 9 C -0.09 -0.87 5.78 -29.03 -0.17 -1.04 16 10 C 0.52 6.93 7.82 -10.99 -0.09 6.85 16 11 O -0.54 -9.59 16.03 5.56 0.09 -9.50 16 12 N -0.73 -8.28 5.56 -60.29 -0.33 -8.62 16 13 C 0.12 1.61 5.56 -4.04 -0.02 1.59 16 14 C -0.12 -1.53 4.73 -26.73 -0.13 -1.65 16 15 C -0.10 -1.69 2.93 -88.75 -0.26 -1.95 16 16 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 17 C -0.14 -2.61 6.53 -24.58 -0.16 -2.77 16 18 C 0.15 3.74 5.89 -2.53 -0.01 3.73 16 19 N -0.61 -16.02 3.39 -170.04 -0.58 -16.59 16 20 C -0.22 -6.28 10.27 -15.06 -0.15 -6.44 16 21 H 0.08 2.14 7.83 -52.48 -0.41 1.73 16 22 C -0.01 -0.41 5.49 -17.43 -0.10 -0.51 16 23 N -0.92 -27.44 10.09 55.49 0.56 -26.88 16 24 Si 0.91 22.51 29.55 -169.99 -5.02 17.49 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 26 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 27 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 28 C 0.14 3.00 6.24 -3.04 -0.02 2.98 16 29 H 0.06 0.24 7.71 -51.93 -0.40 -0.16 16 30 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.34 7.69 -51.93 -0.40 -0.06 16 32 H 0.14 0.82 6.45 -52.49 -0.34 0.48 16 33 H 0.14 0.64 8.06 -52.48 -0.42 0.22 16 34 H 0.16 1.03 8.06 -52.49 -0.42 0.60 16 35 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.11 0.90 7.51 -51.93 -0.39 0.51 16 37 H 0.40 3.21 8.47 -40.82 -0.35 2.86 16 38 H 0.07 1.10 7.69 -51.93 -0.40 0.70 16 39 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.07 0.93 7.93 -51.93 -0.41 0.52 16 42 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.06 1.10 8.05 -51.93 -0.42 0.68 16 44 H 0.11 2.91 5.88 -51.93 -0.31 2.60 16 45 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 46 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 47 H 0.02 0.47 7.68 -51.93 -0.40 0.07 16 48 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 391.67 15.07 5.90 5.90 Total: -1.00 -36.68 391.67 -9.01 -45.69 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -7.58 Total: 0.30 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: -1.76 Total: 0.91 kcal Atomic # 7 Polarization: -57.06 SS G_CDS: -0.45 Total: -57.51 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: -0.10 Total: -12.79 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.68 -9.01 -45.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494044664.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.392 kcal (2) G-P(sol) polarization free energy of solvation -36.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds