Wall clock time and date at job start Tue Mar 31 2020 17:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35920 * 116.99541 * 2 1 4 4 C 1.39134 * 120.47839 * 0.21003 * 3 2 1 5 5 C 1.38530 * 118.37700 * 180.26175 * 4 3 2 6 6 C 1.38251 * 119.22202 * 359.75703 * 5 4 3 7 7 N 1.31850 * 120.88596 * 0.02562 * 6 5 4 8 8 C 1.31839 * 121.78137 * 359.97438 * 7 6 5 9 9 C 1.50701 * 119.66042 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.46906 * 90.00454 * 9 8 7 11 11 O 1.21280 * 120.00058 * 359.97438 * 10 9 8 12 12 N 1.34775 * 119.99856 * 180.02562 * 10 9 8 13 13 C 1.46497 * 120.00083 * 179.97438 * 12 10 9 14 14 C 1.53005 * 109.47062 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.46967 * 180.02562 * 14 13 12 16 16 H 1.08999 * 110.78170 * 308.24051 * 15 14 13 17 17 C 1.55158 * 110.72145 * 184.99928 * 15 14 13 18 18 C 1.54909 * 101.61642 * 206.15534 * 17 15 14 19 19 N 1.47423 * 104.83351 * 36.99324 * 18 17 15 20 20 C 1.36936 * 125.64594 * 155.90840 * 19 18 17 21 21 H 1.08007 * 120.00033 * 179.97438 * 20 19 18 22 22 C 1.38813 * 120.00281 * 359.97114 * 20 19 18 23 23 N 1.31616 * 120.00050 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99983 * 180.02562 * 22 20 19 25 25 H 1.48510 * 109.47129 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47513 * 119.99988 * 24 22 20 27 27 H 1.48502 * 109.47290 * 240.00176 * 24 22 20 28 28 C 1.47016 * 108.70440 * 335.86643 * 19 18 17 29 29 H 1.08992 * 109.47247 * 59.99789 * 1 2 3 30 30 H 1.09001 * 109.46837 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46778 * 299.99653 * 1 2 3 32 32 H 1.08001 * 120.80909 * 0.02562 * 4 3 2 33 33 H 1.08008 * 120.38972 * 179.72894 * 5 4 3 34 34 H 1.08002 * 119.56339 * 179.97438 * 6 5 4 35 35 H 1.08998 * 109.46913 * 330.00142 * 9 8 7 36 36 H 1.09005 * 109.47036 * 209.99930 * 9 8 7 37 37 H 0.97002 * 120.00212 * 359.97438 * 12 10 9 38 38 H 1.09007 * 109.46821 * 60.00505 * 13 12 10 39 39 H 1.08996 * 109.47722 * 300.00172 * 13 12 10 40 40 H 1.08996 * 109.47404 * 60.00468 * 14 13 12 41 41 H 1.09005 * 109.47092 * 300.00001 * 14 13 12 42 42 H 1.09002 * 111.00366 * 88.06052 * 17 15 14 43 43 H 1.09002 * 111.00429 * 324.25114 * 17 15 14 44 44 H 1.09000 * 110.36449 * 155.82966 * 18 17 15 45 45 H 1.09002 * 110.36579 * 278.03887 * 18 17 15 46 46 H 0.96996 * 120.00056 * 180.02562 * 23 22 20 47 47 H 1.09000 * 109.88531 * 120.47268 * 28 19 18 48 48 H 1.08996 * 109.88671 * 241.49081 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2979 2.3842 0.0044 5 6 1.9715 3.5947 -0.0014 6 6 3.3540 3.5977 -0.0061 7 7 4.0333 2.4677 -0.0057 8 6 3.4306 1.2952 -0.0003 9 6 4.2543 0.0332 -0.0007 10 6 4.5347 -0.3840 1.4200 11 8 4.1081 0.2784 2.3420 12 7 5.2604 -1.4928 1.6659 13 6 5.5335 -1.8981 3.0470 14 6 6.3708 -3.1787 3.0466 15 6 6.6554 -3.6023 4.4889 16 1 7.0727 -2.7732 5.0604 17 6 7.6074 -4.8270 4.5237 18 6 7.2259 -5.4804 5.8754 19 7 5.7676 -5.2946 5.9862 20 6 4.9190 -6.0681 6.7323 21 1 3.8615 -5.8489 6.7478 22 6 5.4177 -7.1339 7.4686 23 7 6.7064 -7.4008 7.4501 24 14 4.2599 -8.1894 8.4858 25 1 2.8711 -7.6841 8.3384 26 1 4.3282 -9.5956 8.0135 27 1 4.6597 -8.1271 9.9146 28 6 5.3755 -4.1408 5.1638 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.2184 2.3518 0.0083 33 1 1.4231 4.5252 -0.0026 34 1 3.8848 4.5383 -0.0110 35 1 5.1960 0.2142 -0.5189 36 1 3.7054 -0.7588 -0.5103 37 1 5.6019 -2.0224 0.9285 38 1 4.5918 -2.0793 3.5654 39 1 6.0821 -1.1059 3.5565 40 1 7.3123 -2.9971 2.5284 41 1 5.8225 -3.9711 2.5370 42 1 8.6506 -4.5111 4.5231 43 1 7.4055 -5.5026 3.6924 44 1 7.4735 -6.5419 5.8669 45 1 7.7374 -4.9789 6.6970 46 1 7.0548 -8.1458 7.9643 47 1 4.6600 -4.4536 4.4033 48 1 4.9330 -3.3695 5.7940 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494044664.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:50 Heat of formation + Delta-G solvation = -45.220181 kcal Electronic energy + Delta-G solvation = -27805.747665 eV Core-core repulsion = 23860.477610 eV Total energy + Delta-G solvation = -3945.270055 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.83544 -40.50907 -39.38956 -39.06806 -36.45193 -34.75825 -34.17088 -32.65548 -32.26867 -30.77644 -29.44259 -28.34536 -27.88311 -26.45473 -24.05517 -23.85230 -23.17679 -21.95519 -21.61861 -20.68080 -19.08271 -18.89605 -18.18256 -18.10006 -17.47313 -17.07212 -16.72560 -16.65698 -16.45303 -16.20609 -15.56445 -15.34646 -14.99078 -14.93955 -14.78412 -14.28084 -14.26447 -14.06895 -13.81396 -13.52871 -13.34283 -13.22216 -13.11688 -12.87172 -12.81364 -12.69267 -12.36494 -12.33087 -12.21832 -11.97829 -11.78509 -11.56463 -11.42514 -11.26202 -11.01304 -10.75566 -10.62427 -10.58108 -10.07323 -9.33750 -8.88223 -7.78191 -5.22587 0.09976 0.29278 1.44686 1.46078 1.56546 1.66887 2.17201 2.24637 2.48719 2.84301 3.29886 3.30828 3.63365 3.74253 3.76610 3.82225 3.93354 3.94944 4.08251 4.18732 4.26030 4.32473 4.34301 4.35512 4.37921 4.47473 4.52174 4.64756 4.69223 4.71471 4.74528 4.81719 4.90216 5.04462 5.04933 5.11845 5.12712 5.20081 5.27168 5.43646 5.47390 5.50571 5.51884 5.69486 5.83556 6.21346 6.32089 6.59636 6.99949 7.11217 7.29425 7.79018 8.43083 9.23757 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.018310 B = 0.002011 C = 0.001877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.828420 B =13919.664146 C =14910.299006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.325 6.325 3 C 0.076 3.924 4 C -0.171 4.171 5 C -0.128 4.128 6 C 0.046 3.954 7 N -0.468 5.468 8 C 0.094 3.906 9 C -0.078 4.078 10 C 0.518 3.482 11 O -0.588 6.588 12 N -0.714 5.714 13 C 0.125 3.875 14 C -0.098 4.098 15 C -0.085 4.085 16 H 0.076 0.924 17 C -0.121 4.121 18 C 0.148 3.852 19 N -0.629 5.629 20 C -0.240 4.240 21 H 0.076 0.924 22 C -0.070 4.070 23 N -0.949 5.949 24 Si 0.981 3.019 25 H -0.269 1.269 26 H -0.287 1.287 27 H -0.292 1.292 28 C 0.134 3.866 29 H 0.076 0.924 30 H 0.117 0.883 31 H 0.058 0.942 32 H 0.165 0.835 33 H 0.172 0.828 34 H 0.181 0.819 35 H 0.132 0.868 36 H 0.132 0.868 37 H 0.419 0.581 38 H 0.045 0.955 39 H 0.057 0.943 40 H 0.099 0.901 41 H 0.076 0.924 42 H 0.086 0.914 43 H 0.069 0.931 44 H 0.072 0.928 45 H -0.018 1.018 46 H 0.247 0.753 47 H 0.027 0.973 48 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.577 19.886 -23.714 32.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.238 6.238 3 C 0.028 3.972 4 C -0.197 4.197 5 C -0.147 4.147 6 C -0.111 4.111 7 N -0.178 5.178 8 C -0.046 4.046 9 C -0.118 4.118 10 C 0.305 3.695 11 O -0.468 6.468 12 N -0.367 5.367 13 C 0.001 3.999 14 C -0.136 4.136 15 C -0.104 4.104 16 H 0.094 0.906 17 C -0.159 4.159 18 C 0.024 3.976 19 N -0.355 5.355 20 C -0.369 4.369 21 H 0.094 0.906 22 C -0.262 4.262 23 N -0.599 5.599 24 Si 0.809 3.191 25 H -0.193 1.193 26 H -0.214 1.214 27 H -0.219 1.219 28 C 0.009 3.991 29 H 0.094 0.906 30 H 0.135 0.865 31 H 0.077 0.923 32 H 0.183 0.817 33 H 0.190 0.810 34 H 0.198 0.802 35 H 0.150 0.850 36 H 0.150 0.850 37 H 0.256 0.744 38 H 0.063 0.937 39 H 0.075 0.925 40 H 0.117 0.883 41 H 0.095 0.905 42 H 0.104 0.896 43 H 0.088 0.912 44 H 0.090 0.910 45 H 0.000 1.000 46 H 0.057 0.943 47 H 0.045 0.955 48 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges -7.920 20.005 -22.937 31.449 hybrid contribution -1.509 -0.742 1.014 1.964 sum -9.429 19.262 -21.923 30.669 Atomic orbital electron populations 1.23386 0.76277 1.05775 1.02336 1.86065 1.23545 1.25910 1.88253 1.20043 0.93243 0.86206 0.97720 1.22070 1.02151 0.91765 1.03719 1.22380 0.95408 0.99426 0.97498 1.23130 0.92618 0.96509 0.98846 1.67413 1.41196 0.98327 1.10848 1.20176 0.88676 0.93845 1.01861 1.20462 1.02874 0.94839 0.93674 1.20868 0.77029 0.80030 0.91585 1.90691 1.53084 1.54932 1.48057 1.45841 1.54506 1.27045 1.09317 1.21245 0.99121 0.96662 0.82830 1.21627 1.00971 0.95665 0.95366 1.22019 0.94886 0.97388 0.96116 0.90581 1.22879 0.99068 0.96344 0.97648 1.21767 0.82843 1.00539 0.92490 1.44883 1.04496 1.32199 1.53965 1.19490 0.90408 1.06941 1.20061 0.90587 1.25658 0.97858 1.00588 1.02081 1.70070 1.12350 1.31589 1.45867 0.84967 0.78174 0.78244 0.77682 1.19325 1.21389 1.21911 1.21576 0.96317 0.88447 0.92767 0.90564 0.86506 0.92340 0.81748 0.81026 0.80192 0.84968 0.85002 0.74361 0.93683 0.92476 0.88263 0.90500 0.89572 0.91197 0.90986 1.00004 0.94298 0.95531 0.97383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.83 113.37 1.11 1.30 16 2 O -0.33 -6.36 9.54 -92.65 -0.88 -7.24 16 3 C 0.08 1.60 6.67 22.60 0.15 1.75 16 4 C -0.17 -2.69 9.14 22.55 0.21 -2.48 16 5 C -0.13 -1.76 10.11 22.34 0.23 -1.53 16 6 C 0.05 0.82 11.18 84.69 0.95 1.76 16 7 N -0.47 -11.15 10.27 -183.50 -1.88 -13.04 16 8 C 0.09 2.20 5.29 42.67 0.23 2.42 16 9 C -0.08 -1.50 5.78 29.10 0.17 -1.33 16 10 C 0.52 13.48 7.82 87.66 0.69 14.17 16 11 O -0.59 -21.44 16.03 -3.03 -0.05 -21.49 16 12 N -0.71 -15.01 5.56 -463.06 -2.57 -17.58 16 13 C 0.13 3.24 5.56 86.38 0.48 3.72 16 14 C -0.10 -2.31 4.73 30.60 0.14 -2.17 16 15 C -0.08 -2.79 2.93 -9.58 -0.03 -2.81 16 16 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 17 C -0.12 -4.35 6.53 31.99 0.21 -4.14 16 18 C 0.15 7.52 5.89 86.86 0.51 8.04 16 19 N -0.63 -33.94 3.39 -691.88 -2.35 -36.29 16 20 C -0.24 -14.06 10.27 84.03 0.86 -13.20 16 21 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 22 C -0.07 -4.07 5.49 84.86 0.47 -3.61 16 23 N -0.95 -57.95 10.09 21.65 0.22 -57.74 16 24 Si 0.98 46.94 29.55 68.60 2.03 48.97 16 25 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 26 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 27 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 28 C 0.13 5.78 6.24 86.75 0.54 6.32 16 29 H 0.08 0.51 7.71 -2.39 -0.02 0.49 16 30 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.06 0.62 7.69 -2.39 -0.02 0.60 16 32 H 0.17 1.55 6.45 -2.91 -0.02 1.53 16 33 H 0.17 1.04 8.06 -2.91 -0.02 1.01 16 34 H 0.18 2.08 8.06 -2.91 -0.02 2.06 16 35 H 0.13 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.13 1.93 7.51 -2.38 -0.02 1.91 16 37 H 0.42 5.51 8.47 -92.71 -0.79 4.72 16 38 H 0.04 1.40 7.69 -2.38 -0.02 1.39 16 39 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.08 1.77 7.93 -2.38 -0.02 1.75 16 42 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 43 H 0.07 2.39 8.05 -2.39 -0.02 2.38 16 44 H 0.07 4.13 5.88 -2.39 -0.01 4.12 16 45 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 46 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 47 H 0.03 1.12 7.68 -2.39 -0.02 1.10 16 48 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 Total: -1.00 -83.66 391.67 1.60 -82.06 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: 0.18 Total: 14.15 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: 6.91 Total: 8.19 kcal Atomic # 7 Polarization: -118.06 SS G_CDS: -6.59 Total: -124.65 kcal Atomic # 8 Polarization: -27.79 SS G_CDS: -0.93 Total: -28.73 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 2.03 Total: 48.97 kcal Total: -83.66 1.60 -82.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494044664.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.844 kcal (2) G-P(sol) polarization free energy of solvation -83.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds