Wall clock time and date at job start Tue Mar 31 2020 17:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35909 * 116.99893 * 2 1 4 4 C 1.39139 * 120.47494 * 0.02562 * 3 2 1 5 5 C 1.38542 * 118.37563 * 179.97438 * 4 3 2 6 6 C 1.38260 * 119.21796 * 0.02562 * 5 4 3 7 7 N 1.31846 * 120.88733 * 359.97438 * 6 5 4 8 8 C 1.31844 * 121.78099 * 0.02562 * 7 6 5 9 9 C 1.50699 * 119.65532 * 180.02562 * 8 7 6 10 10 C 1.50696 * 109.47436 * 90.00380 * 9 8 7 11 11 O 1.21287 * 119.99934 * 359.97438 * 10 9 8 12 12 N 1.34767 * 120.00540 * 179.97438 * 10 9 8 13 13 C 1.46499 * 120.00639 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47633 * 179.97438 * 13 12 10 15 15 C 1.52997 * 109.46979 * 180.02562 * 14 13 12 16 16 H 1.08996 * 110.64610 * 54.29865 * 15 14 13 17 17 C 1.55162 * 110.71867 * 177.44391 * 15 14 13 18 18 C 1.55117 * 101.48650 * 153.73483 * 17 15 14 19 19 N 1.47426 * 104.94403 * 323.21712 * 18 17 15 20 20 C 1.36928 * 125.65200 * 203.96875 * 19 18 17 21 21 H 1.07995 * 120.00369 * 180.02562 * 20 19 18 22 22 C 1.38818 * 119.99885 * 0.04359 * 20 19 18 23 23 N 1.31617 * 119.99863 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00066 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47023 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.47239 * 119.99859 * 24 22 20 27 27 H 1.48498 * 109.47006 * 240.00177 * 24 22 20 28 28 C 1.47025 * 108.70025 * 24.00908 * 19 18 17 29 29 H 1.08994 * 109.47240 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47201 * 300.00400 * 1 2 3 31 31 H 1.09005 * 109.46506 * 60.00024 * 1 2 3 32 32 H 1.07995 * 120.81306 * 359.95289 * 4 3 2 33 33 H 1.07994 * 120.39184 * 179.97438 * 5 4 3 34 34 H 1.08000 * 119.55243 * 180.02562 * 6 5 4 35 35 H 1.08998 * 109.46706 * 210.00349 * 9 8 7 36 36 H 1.09007 * 109.47306 * 329.99940 * 9 8 7 37 37 H 0.97005 * 120.00148 * 0.02562 * 12 10 9 38 38 H 1.08997 * 109.47097 * 300.00518 * 13 12 10 39 39 H 1.09007 * 109.47043 * 59.99741 * 13 12 10 40 40 H 1.08998 * 109.46844 * 300.00285 * 14 13 12 41 41 H 1.08995 * 109.46806 * 60.00150 * 14 13 12 42 42 H 1.09008 * 111.00151 * 271.93828 * 17 15 14 43 43 H 1.08995 * 111.00587 * 35.78573 * 17 15 14 44 44 H 1.09003 * 110.41875 * 204.29080 * 18 17 15 45 45 H 1.08997 * 110.30397 * 82.08787 * 18 17 15 46 46 H 0.97001 * 119.99959 * 180.02562 * 23 22 20 47 47 H 1.09000 * 109.87816 * 239.52364 * 28 19 18 48 48 H 1.08996 * 110.01530 * 118.43056 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2979 2.3841 0.0005 5 6 1.9717 3.5947 0.0011 6 6 3.3543 3.5976 0.0005 7 7 4.0335 2.4675 0.0000 8 6 3.4306 1.2950 -0.0005 9 6 4.2543 0.0330 -0.0005 10 6 4.5283 -0.3881 1.4202 11 8 4.0975 0.2719 2.3421 12 7 5.2519 -1.4980 1.6665 13 6 5.5188 -1.9071 3.0477 14 6 6.3538 -3.1891 3.0477 15 6 6.6319 -3.6165 4.4902 16 1 5.7014 -3.7058 5.0508 17 6 7.4236 -4.9505 4.5245 18 6 8.1615 -4.8369 5.8842 19 7 8.5160 -3.4111 6.0064 20 6 9.5370 -2.9047 6.7654 21 1 9.7159 -1.8400 6.7886 22 6 10.3423 -3.7601 7.5048 23 7 10.1248 -5.0579 7.4759 24 14 11.7357 -3.0694 8.5398 25 1 11.7695 -1.5912 8.4012 26 1 11.5187 -3.4277 9.9645 27 1 13.0261 -3.6401 8.0768 28 6 7.5910 -2.6228 5.1790 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5139 -0.8901 32 1 0.2185 2.3518 0.0002 33 1 1.4234 4.5251 0.0011 34 1 3.8850 4.5382 0.0013 35 1 3.7077 -0.7575 -0.5148 36 1 5.1984 0.2153 -0.5140 37 1 5.5968 -2.0257 0.9293 38 1 6.0658 -1.1166 3.5615 39 1 4.5748 -2.0888 3.5617 40 1 5.8063 -3.9793 2.5341 41 1 7.2977 -3.0078 2.5337 42 1 6.7482 -5.8061 4.5137 43 1 8.1336 -5.0048 3.6993 44 1 9.0611 -5.4525 5.8813 45 1 7.5015 -5.1349 6.6988 46 1 10.6874 -5.6556 7.9929 47 1 8.1495 -2.0652 4.4272 48 1 7.0241 -1.9344 5.8057 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494044666.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:54 Heat of formation + Delta-G solvation = -19.090626 kcal Electronic energy + Delta-G solvation = -27757.790263 eV Core-core repulsion = 23813.653271 eV Total energy + Delta-G solvation = -3944.136993 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.14408 -39.48673 -38.44592 -37.73992 -35.14551 -33.47221 -32.95850 -31.78058 -30.81019 -29.16057 -28.44515 -27.80406 -26.33561 -24.65406 -23.21890 -23.03083 -22.05843 -20.61256 -20.04223 -19.24031 -18.46986 -17.49342 -17.16771 -16.89080 -16.62773 -16.12239 -15.68937 -15.55833 -15.02705 -14.72831 -14.55318 -14.25322 -14.09809 -13.80787 -13.65555 -13.42107 -13.25270 -12.64887 -12.46515 -12.28060 -12.17785 -11.85328 -11.79768 -11.76632 -11.61817 -11.53091 -11.01214 -10.85999 -10.72701 -10.19385 -10.09186 -10.01674 -9.90106 -9.88206 -9.75973 -9.68109 -9.40473 -9.00941 -8.65813 -8.59564 -6.76012 -5.59717 -3.00709 0.77509 0.96168 2.67183 2.78889 3.08700 3.43484 3.49058 3.51708 3.57815 3.97892 4.25199 4.36210 4.54406 4.60062 4.69942 4.75703 4.78293 4.92461 5.02299 5.05570 5.09665 5.14347 5.19110 5.36095 5.46380 5.53590 5.65459 5.66476 5.70327 5.75049 5.85561 5.96565 6.08062 6.09757 6.26069 6.29611 6.44677 6.49566 6.66212 6.70306 6.80946 6.83925 7.04771 7.49443 7.58730 7.70067 7.70403 7.91771 8.24150 8.42795 9.28723 9.89771 10.55381 11.44316 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020932 B = 0.001930 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.328032 B =14507.347078 C =15372.085440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.307 6.307 3 C 0.092 3.908 4 C -0.166 4.166 5 C -0.134 4.134 6 C 0.064 3.936 7 N -0.438 5.438 8 C 0.127 3.873 9 C -0.087 4.087 10 C 0.521 3.479 11 O -0.535 6.535 12 N -0.729 5.729 13 C 0.119 3.881 14 C -0.116 4.116 15 C -0.097 4.097 16 H 0.071 0.929 17 C -0.139 4.139 18 C 0.151 3.849 19 N -0.606 5.606 20 C -0.218 4.218 21 H 0.077 0.923 22 C -0.015 4.015 23 N -0.923 5.923 24 Si 0.914 3.086 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 C 0.139 3.861 29 H 0.104 0.896 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.139 0.861 33 H 0.138 0.862 34 H 0.159 0.841 35 H 0.112 0.888 36 H 0.113 0.887 37 H 0.400 0.600 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.056 0.944 43 H 0.059 0.941 44 H 0.105 0.895 45 H 0.010 0.990 46 H 0.250 0.750 47 H 0.023 0.977 48 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.552 10.255 -21.691 31.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.219 6.219 3 C 0.044 3.956 4 C -0.192 4.192 5 C -0.154 4.154 6 C -0.093 4.093 7 N -0.147 5.147 8 C -0.013 4.013 9 C -0.127 4.127 10 C 0.306 3.694 11 O -0.411 6.411 12 N -0.381 5.381 13 C -0.004 4.004 14 C -0.154 4.154 15 C -0.117 4.117 16 H 0.090 0.910 17 C -0.177 4.177 18 C 0.026 3.974 19 N -0.331 5.331 20 C -0.347 4.347 21 H 0.095 0.905 22 C -0.210 4.210 23 N -0.573 5.573 24 Si 0.745 3.255 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.218 1.218 28 C 0.013 3.987 29 H 0.122 0.878 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.157 0.843 33 H 0.155 0.845 34 H 0.177 0.823 35 H 0.130 0.870 36 H 0.131 0.869 37 H 0.233 0.767 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.123 0.877 45 H 0.028 0.972 46 H 0.061 0.939 47 H 0.041 0.959 48 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -19.719 10.512 -20.855 30.566 hybrid contribution -0.463 0.318 0.335 0.654 sum -20.182 10.831 -20.520 30.752 Atomic orbital electron populations 1.23121 0.78083 1.04426 1.01342 1.86097 1.21588 1.25930 1.88270 1.19825 0.93047 0.85215 0.97491 1.21658 1.00721 0.92138 1.04679 1.21985 0.95773 0.98232 0.99386 1.22617 0.91448 0.96315 0.98918 1.67452 1.40029 0.97521 1.09682 1.19914 0.87702 0.93404 1.00318 1.20446 1.01787 0.94598 0.95897 1.20257 0.78019 0.80422 0.90712 1.90723 1.50878 1.53258 1.46274 1.46014 1.55193 1.27364 1.09541 1.21484 0.99874 0.97247 0.81844 1.21785 0.99779 0.95639 0.98178 1.22092 0.98678 0.97221 0.93702 0.91040 1.23072 0.98414 0.94919 1.01327 1.21954 0.98885 0.86838 0.89711 1.44529 1.33483 1.02230 1.52906 1.19150 1.04523 0.92189 1.18833 0.90485 1.24791 0.99917 0.95556 1.00694 1.69817 1.40939 1.01382 1.45137 0.85999 0.81814 0.77931 0.79805 1.20531 1.21812 1.21781 1.21367 0.90892 0.93248 0.93147 0.87808 0.92467 0.92591 0.84314 0.84464 0.82345 0.86959 0.86902 0.76656 0.91039 0.91660 0.91651 0.91149 0.92495 0.92202 0.87700 0.97205 0.93880 0.95936 0.96294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.83 101.05 0.99 1.13 16 2 O -0.31 -2.94 9.55 -19.45 -0.19 -3.12 16 3 C 0.09 0.98 6.67 -39.07 -0.26 0.72 16 4 C -0.17 -1.40 9.14 -39.14 -0.36 -1.76 16 5 C -0.13 -1.06 10.11 -39.46 -0.40 -1.46 16 6 C 0.06 0.62 11.18 -17.54 -0.20 0.42 16 7 N -0.44 -5.42 10.27 -9.35 -0.10 -5.52 16 8 C 0.13 1.51 5.29 -82.41 -0.44 1.08 16 9 C -0.09 -0.87 5.77 -29.04 -0.17 -1.04 16 10 C 0.52 6.95 7.82 -10.99 -0.09 6.86 16 11 O -0.54 -9.61 16.03 5.55 0.09 -9.52 16 12 N -0.73 -8.31 5.56 -60.30 -0.33 -8.64 16 13 C 0.12 1.61 5.54 -4.04 -0.02 1.59 16 14 C -0.12 -1.53 4.72 -26.73 -0.13 -1.65 16 15 C -0.10 -1.68 2.95 -88.78 -0.26 -1.95 16 16 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 17 C -0.14 -2.61 6.55 -24.47 -0.16 -2.77 16 18 C 0.15 3.75 5.89 -2.42 -0.01 3.74 16 19 N -0.61 -16.08 3.40 -169.94 -0.58 -16.66 16 20 C -0.22 -6.31 10.27 -15.06 -0.15 -6.46 16 21 H 0.08 2.17 7.83 -52.49 -0.41 1.75 16 22 C -0.01 -0.42 5.49 -17.43 -0.10 -0.52 16 23 N -0.92 -27.54 10.09 55.49 0.56 -26.98 16 24 Si 0.91 22.65 29.55 -169.99 -5.02 17.63 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 27 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 28 C 0.14 3.02 6.11 -3.06 -0.02 3.00 16 29 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.30 7.70 -51.93 -0.40 -0.10 16 31 H 0.06 0.21 7.70 -51.93 -0.40 -0.19 16 32 H 0.14 0.78 6.45 -52.49 -0.34 0.44 16 33 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 34 H 0.16 1.09 8.06 -52.49 -0.42 0.66 16 35 H 0.11 0.87 7.52 -51.93 -0.39 0.47 16 36 H 0.11 0.94 8.14 -51.92 -0.42 0.51 16 37 H 0.40 3.22 8.47 -40.82 -0.35 2.87 16 38 H 0.07 1.13 7.59 -51.93 -0.39 0.74 16 39 H 0.07 0.93 8.14 -51.92 -0.42 0.51 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.07 0.94 8.01 -51.93 -0.42 0.52 16 42 H 0.06 0.94 8.14 -51.92 -0.42 0.52 16 43 H 0.06 1.10 8.05 -51.93 -0.42 0.68 16 44 H 0.11 2.92 5.87 -51.93 -0.30 2.61 16 45 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 46 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 47 H 0.02 0.49 7.73 -51.93 -0.40 0.08 16 48 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 391.57 15.07 5.90 5.90 Total: -1.00 -36.88 391.57 -9.01 -45.90 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -7.58 Total: 0.09 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: -1.76 Total: 0.93 kcal Atomic # 7 Polarization: -57.35 SS G_CDS: -0.45 Total: -57.80 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: -0.10 Total: -12.65 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.88 -9.01 -45.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494044666.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.807 kcal (2) G-P(sol) polarization free energy of solvation -36.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds