Wall clock time and date at job start Tue Mar 31 2020 17:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35909 * 116.99893 * 2 1 4 4 C 1.39139 * 120.47494 * 0.02562 * 3 2 1 5 5 C 1.38542 * 118.37563 * 179.97438 * 4 3 2 6 6 C 1.38260 * 119.21796 * 0.02562 * 5 4 3 7 7 N 1.31846 * 120.88733 * 359.97438 * 6 5 4 8 8 C 1.31844 * 121.78099 * 0.02562 * 7 6 5 9 9 C 1.50699 * 119.65532 * 180.02562 * 8 7 6 10 10 C 1.50696 * 109.47436 * 90.00380 * 9 8 7 11 11 O 1.21287 * 119.99934 * 359.97438 * 10 9 8 12 12 N 1.34767 * 120.00540 * 179.97438 * 10 9 8 13 13 C 1.46499 * 120.00639 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47633 * 179.97438 * 13 12 10 15 15 C 1.52997 * 109.46979 * 180.02562 * 14 13 12 16 16 H 1.08996 * 110.64610 * 54.29865 * 15 14 13 17 17 C 1.55162 * 110.71867 * 177.44391 * 15 14 13 18 18 C 1.55117 * 101.48650 * 153.73483 * 17 15 14 19 19 N 1.47426 * 104.94403 * 323.21712 * 18 17 15 20 20 C 1.36928 * 125.65200 * 203.96875 * 19 18 17 21 21 H 1.07995 * 120.00369 * 180.02562 * 20 19 18 22 22 C 1.38818 * 119.99885 * 0.04359 * 20 19 18 23 23 N 1.31617 * 119.99863 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00066 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47023 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.47239 * 119.99859 * 24 22 20 27 27 H 1.48498 * 109.47006 * 240.00177 * 24 22 20 28 28 C 1.47025 * 108.70025 * 24.00908 * 19 18 17 29 29 H 1.08994 * 109.47240 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47201 * 300.00400 * 1 2 3 31 31 H 1.09005 * 109.46506 * 60.00024 * 1 2 3 32 32 H 1.07995 * 120.81306 * 359.95289 * 4 3 2 33 33 H 1.07994 * 120.39184 * 179.97438 * 5 4 3 34 34 H 1.08000 * 119.55243 * 180.02562 * 6 5 4 35 35 H 1.08998 * 109.46706 * 210.00349 * 9 8 7 36 36 H 1.09007 * 109.47306 * 329.99940 * 9 8 7 37 37 H 0.97005 * 120.00148 * 0.02562 * 12 10 9 38 38 H 1.08997 * 109.47097 * 300.00518 * 13 12 10 39 39 H 1.09007 * 109.47043 * 59.99741 * 13 12 10 40 40 H 1.08998 * 109.46844 * 300.00285 * 14 13 12 41 41 H 1.08995 * 109.46806 * 60.00150 * 14 13 12 42 42 H 1.09008 * 111.00151 * 271.93828 * 17 15 14 43 43 H 1.08995 * 111.00587 * 35.78573 * 17 15 14 44 44 H 1.09003 * 110.41875 * 204.29080 * 18 17 15 45 45 H 1.08997 * 110.30397 * 82.08787 * 18 17 15 46 46 H 0.97001 * 119.99959 * 180.02562 * 23 22 20 47 47 H 1.09000 * 109.87816 * 239.52364 * 28 19 18 48 48 H 1.08996 * 110.01530 * 118.43056 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2979 2.3841 0.0005 5 6 1.9717 3.5947 0.0011 6 6 3.3543 3.5976 0.0005 7 7 4.0335 2.4675 0.0000 8 6 3.4306 1.2950 -0.0005 9 6 4.2543 0.0330 -0.0005 10 6 4.5283 -0.3881 1.4202 11 8 4.0975 0.2719 2.3421 12 7 5.2519 -1.4980 1.6665 13 6 5.5188 -1.9071 3.0477 14 6 6.3538 -3.1891 3.0477 15 6 6.6319 -3.6165 4.4902 16 1 5.7014 -3.7058 5.0508 17 6 7.4236 -4.9505 4.5245 18 6 8.1615 -4.8369 5.8842 19 7 8.5160 -3.4111 6.0064 20 6 9.5370 -2.9047 6.7654 21 1 9.7159 -1.8400 6.7886 22 6 10.3423 -3.7601 7.5048 23 7 10.1248 -5.0579 7.4759 24 14 11.7357 -3.0694 8.5398 25 1 11.7695 -1.5912 8.4012 26 1 11.5187 -3.4277 9.9645 27 1 13.0261 -3.6401 8.0768 28 6 7.5910 -2.6228 5.1790 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5139 -0.8901 32 1 0.2185 2.3518 0.0002 33 1 1.4234 4.5251 0.0011 34 1 3.8850 4.5382 0.0013 35 1 3.7077 -0.7575 -0.5148 36 1 5.1984 0.2153 -0.5140 37 1 5.5968 -2.0257 0.9293 38 1 6.0658 -1.1166 3.5615 39 1 4.5748 -2.0888 3.5617 40 1 5.8063 -3.9793 2.5341 41 1 7.2977 -3.0078 2.5337 42 1 6.7482 -5.8061 4.5137 43 1 8.1336 -5.0048 3.6993 44 1 9.0611 -5.4525 5.8813 45 1 7.5015 -5.1349 6.6988 46 1 10.6874 -5.6556 7.9929 47 1 8.1495 -2.0652 4.4272 48 1 7.0241 -1.9344 5.8057 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494044666.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:53 Heat of formation + Delta-G solvation = -45.289581 kcal Electronic energy + Delta-G solvation = -27758.926335 eV Core-core repulsion = 23813.653271 eV Total energy + Delta-G solvation = -3945.273065 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.83491 -40.50926 -39.38563 -39.06273 -36.45138 -34.75994 -34.17009 -32.65519 -32.26927 -30.77640 -29.43600 -28.32997 -27.87409 -26.46315 -24.06375 -23.85234 -23.19084 -21.95806 -21.61002 -20.67042 -19.07640 -18.89863 -18.16687 -18.11343 -17.47144 -17.07603 -16.72272 -16.68048 -16.42275 -16.21288 -15.56186 -15.34373 -14.98245 -14.92454 -14.81558 -14.27681 -14.23848 -14.08774 -13.78530 -13.55886 -13.36104 -13.19849 -13.11270 -12.87926 -12.81580 -12.69985 -12.35369 -12.32212 -12.21011 -11.98168 -11.78399 -11.55898 -11.43086 -11.25955 -11.01285 -10.75728 -10.62590 -10.57480 -10.07372 -9.33547 -8.88411 -7.78469 -5.22781 0.10039 0.29514 1.44564 1.45788 1.56436 1.66789 2.17159 2.24964 2.48528 2.84306 3.29987 3.30672 3.63297 3.74139 3.76580 3.82412 3.93386 3.95344 4.08442 4.18223 4.26248 4.33682 4.35924 4.36389 4.38015 4.47486 4.52270 4.64511 4.70576 4.71990 4.74423 4.81682 4.89792 5.03804 5.04910 5.11716 5.12927 5.19904 5.27329 5.43435 5.47312 5.50360 5.51776 5.69575 5.83510 6.21937 6.32105 6.59589 7.00743 7.11212 7.29419 7.78870 8.42776 9.23355 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020932 B = 0.001930 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.328032 B =14507.347078 C =15372.085440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.324 6.324 3 C 0.079 3.921 4 C -0.170 4.170 5 C -0.128 4.128 6 C 0.044 3.956 7 N -0.471 5.471 8 C 0.093 3.907 9 C -0.079 4.079 10 C 0.518 3.482 11 O -0.588 6.588 12 N -0.714 5.714 13 C 0.125 3.875 14 C -0.099 4.099 15 C -0.084 4.084 16 H 0.077 0.923 17 C -0.121 4.121 18 C 0.148 3.852 19 N -0.629 5.629 20 C -0.240 4.240 21 H 0.075 0.925 22 C -0.069 4.069 23 N -0.948 5.948 24 Si 0.981 3.019 25 H -0.270 1.270 26 H -0.291 1.291 27 H -0.287 1.287 28 C 0.133 3.867 29 H 0.120 0.880 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.167 0.833 33 H 0.172 0.828 34 H 0.178 0.822 35 H 0.136 0.864 36 H 0.128 0.872 37 H 0.419 0.581 38 H 0.043 0.957 39 H 0.058 0.942 40 H 0.101 0.899 41 H 0.075 0.925 42 H 0.087 0.913 43 H 0.069 0.931 44 H 0.072 0.928 45 H -0.018 1.018 46 H 0.247 0.753 47 H 0.025 0.975 48 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.032 10.606 -23.788 34.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.236 6.236 3 C 0.031 3.969 4 C -0.196 4.196 5 C -0.147 4.147 6 C -0.113 4.113 7 N -0.181 5.181 8 C -0.047 4.047 9 C -0.119 4.119 10 C 0.305 3.695 11 O -0.468 6.468 12 N -0.367 5.367 13 C 0.001 3.999 14 C -0.136 4.136 15 C -0.104 4.104 16 H 0.095 0.905 17 C -0.159 4.159 18 C 0.024 3.976 19 N -0.355 5.355 20 C -0.369 4.369 21 H 0.093 0.907 22 C -0.261 4.261 23 N -0.598 5.598 24 Si 0.809 3.191 25 H -0.194 1.194 26 H -0.218 1.218 27 H -0.214 1.214 28 C 0.008 3.992 29 H 0.138 0.862 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.184 0.816 33 H 0.190 0.810 34 H 0.195 0.805 35 H 0.154 0.846 36 H 0.146 0.854 37 H 0.256 0.744 38 H 0.061 0.939 39 H 0.077 0.923 40 H 0.119 0.881 41 H 0.094 0.906 42 H 0.106 0.894 43 H 0.087 0.913 44 H 0.090 0.910 45 H 0.000 1.000 46 H 0.057 0.943 47 H 0.043 0.957 48 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges -21.204 10.841 -23.006 33.112 hybrid contribution -0.078 0.260 1.011 1.047 sum -21.282 11.101 -21.995 32.557 Atomic orbital electron populations 1.23404 0.76198 1.05898 1.02320 1.86056 1.23598 1.25733 1.88223 1.19987 0.93079 0.86262 0.97585 1.22074 1.02178 0.91675 1.03698 1.22379 0.95280 0.99549 0.97479 1.23109 0.92725 0.96446 0.98998 1.67412 1.41367 0.98458 1.10843 1.20186 0.88806 0.93758 1.01908 1.20465 1.02802 0.94930 0.93659 1.20870 0.77096 0.79968 0.91590 1.90694 1.53067 1.54943 1.48073 1.45839 1.54453 1.27093 1.09310 1.21246 0.99209 0.96606 0.82825 1.21628 1.00420 0.96205 0.95393 1.22011 0.97406 0.94917 0.96040 0.90459 1.22913 0.98581 0.96862 0.97552 1.21810 0.97641 0.85717 0.92479 1.44876 1.33850 1.03601 1.53204 1.19483 1.05538 0.92385 1.19537 0.90683 1.25653 1.02414 0.95985 1.02090 1.70069 1.41723 1.02361 1.45669 0.84969 0.78615 0.77760 0.77747 1.19429 1.21823 1.21370 1.21565 0.90956 0.93971 0.92672 0.86219 0.92321 0.90693 0.81552 0.81040 0.80467 0.84595 0.85383 0.74359 0.93889 0.92318 0.88100 0.90631 0.89402 0.91260 0.90985 0.99962 0.94280 0.95704 0.97396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.83 113.37 1.11 1.26 16 2 O -0.32 -5.78 9.55 -92.52 -0.88 -6.66 16 3 C 0.08 1.60 6.67 22.60 0.15 1.76 16 4 C -0.17 -2.58 9.14 22.56 0.21 -2.37 16 5 C -0.13 -1.78 10.11 22.35 0.23 -1.55 16 6 C 0.04 0.82 11.18 84.70 0.95 1.77 16 7 N -0.47 -11.68 10.27 -183.50 -1.88 -13.56 16 8 C 0.09 2.18 5.29 42.67 0.23 2.41 16 9 C -0.08 -1.51 5.77 29.10 0.17 -1.34 16 10 C 0.52 13.54 7.82 87.66 0.69 14.22 16 11 O -0.59 -21.53 16.03 -3.05 -0.05 -21.58 16 12 N -0.71 -15.07 5.56 -463.07 -2.57 -17.65 16 13 C 0.13 3.25 5.54 86.38 0.48 3.73 16 14 C -0.10 -2.32 4.72 30.59 0.14 -2.17 16 15 C -0.08 -2.77 2.95 -9.60 -0.03 -2.80 16 16 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 17 C -0.12 -4.33 6.55 32.06 0.21 -4.12 16 18 C 0.15 7.53 5.89 86.93 0.51 8.04 16 19 N -0.63 -34.16 3.40 -691.57 -2.35 -36.51 16 20 C -0.24 -14.21 10.27 84.04 0.86 -13.34 16 21 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 22 C -0.07 -4.07 5.49 84.86 0.47 -3.61 16 23 N -0.95 -58.09 10.09 21.65 0.22 -57.87 16 24 Si 0.98 47.32 29.55 68.60 2.03 49.35 16 25 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 26 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 27 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 28 C 0.13 5.81 6.11 86.73 0.53 6.34 16 29 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.06 0.50 7.70 -2.39 -0.02 0.48 16 31 H 0.07 0.38 7.70 -2.38 -0.02 0.36 16 32 H 0.17 1.41 6.45 -2.91 -0.02 1.39 16 33 H 0.17 1.06 8.06 -2.91 -0.02 1.04 16 34 H 0.18 2.29 8.06 -2.91 -0.02 2.26 16 35 H 0.14 1.86 7.52 -2.39 -0.02 1.84 16 36 H 0.13 1.98 8.14 -2.38 -0.02 1.96 16 37 H 0.42 5.53 8.47 -92.70 -0.79 4.74 16 38 H 0.04 1.37 7.59 -2.39 -0.02 1.35 16 39 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 40 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.08 1.76 8.01 -2.39 -0.02 1.75 16 42 H 0.09 2.64 8.14 -2.38 -0.02 2.62 16 43 H 0.07 2.38 8.05 -2.39 -0.02 2.36 16 44 H 0.07 4.14 5.87 -2.39 -0.01 4.12 16 45 H -0.02 -0.97 8.14 -2.39 -0.02 -0.98 16 46 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 47 H 0.02 1.07 7.73 -2.39 -0.02 1.05 16 48 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 Total: -1.00 -84.45 391.57 1.58 -82.87 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: 0.18 Total: 13.39 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: 6.90 Total: 8.22 kcal Atomic # 7 Polarization: -119.00 SS G_CDS: -6.59 Total: -125.58 kcal Atomic # 8 Polarization: -27.31 SS G_CDS: -0.93 Total: -28.24 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 2.03 Total: 49.35 kcal Total: -84.45 1.58 -82.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494044666.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.580 kcal (2) G-P(sol) polarization free energy of solvation -84.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds