Wall clock time and date at job start Tue Mar 31 2020 17:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35641 * 117.00428 * 2 1 4 4 C 1.39353 * 120.53898 * 0.24532 * 3 2 1 5 5 C 1.38301 * 118.44162 * 180.28966 * 4 3 2 6 6 C 1.38762 * 119.44148 * 359.72651 * 5 4 3 7 7 N 1.31375 * 121.07229 * 0.02562 * 6 5 4 8 8 C 1.32857 * 121.69463 * 359.97438 * 7 6 5 9 9 C 1.47829 * 119.78438 * 180.02562 * 8 7 6 10 10 O 1.21560 * 119.99864 * 140.30121 * 9 8 7 11 11 N 1.34778 * 120.00158 * 320.57467 * 9 8 7 12 12 C 1.46924 * 120.63011 * 3.19306 * 11 9 8 13 13 C 1.52757 * 109.00676 * 233.58272 * 12 11 9 14 14 C 1.53040 * 109.38682 * 305.58553 * 13 12 11 15 15 C 1.52995 * 109.45244 * 181.25415 * 14 13 12 16 16 C 1.53004 * 109.47208 * 64.94158 * 15 14 13 17 17 N 1.46497 * 109.46864 * 180.02562 * 16 15 14 18 18 C 1.36940 * 119.99443 * 180.02562 * 17 16 15 19 19 H 1.08001 * 120.00339 * 359.97438 * 18 17 16 20 20 C 1.38808 * 119.99757 * 179.97438 * 18 17 16 21 21 N 1.31623 * 120.00319 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 120.00172 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47149 * 90.00043 * 22 20 18 24 24 H 1.48502 * 109.47100 * 210.00143 * 22 20 18 25 25 H 1.48501 * 109.47208 * 330.00160 * 22 20 18 26 26 C 1.53049 * 109.53331 * 61.23954 * 14 13 12 27 27 C 1.46924 * 120.62900 * 183.47053 * 11 9 8 28 28 H 1.08999 * 109.47129 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47156 * 299.99681 * 1 2 3 30 30 H 1.08992 * 109.47768 * 59.99838 * 1 2 3 31 31 H 1.08004 * 120.77907 * 359.97438 * 4 3 2 32 32 H 1.07990 * 120.27788 * 179.71299 * 5 4 3 33 33 H 1.08006 * 119.46619 * 180.02562 * 6 5 4 34 34 H 1.08999 * 109.58633 * 353.41407 * 12 11 9 35 35 H 1.08990 * 109.58849 * 113.84066 * 12 11 9 36 36 H 1.09002 * 109.56839 * 185.54838 * 13 12 11 37 37 H 1.09005 * 109.36359 * 65.49945 * 13 12 11 38 38 H 1.09003 * 109.45914 * 301.22481 * 14 13 12 39 39 H 1.09004 * 109.46809 * 184.93995 * 15 14 13 40 40 H 1.09004 * 109.47294 * 304.93736 * 15 14 13 41 41 H 1.09000 * 109.46453 * 299.99969 * 16 15 14 42 42 H 1.08999 * 109.46915 * 59.99793 * 16 15 14 43 43 H 0.96999 * 120.00573 * 359.97438 * 17 16 15 44 44 H 0.96994 * 120.00526 * 179.97438 * 21 20 18 45 45 H 1.08998 * 109.49199 * 178.68598 * 26 14 13 46 46 H 1.08992 * 109.52360 * 58.60675 * 26 14 13 47 47 H 1.09001 * 109.58542 * 246.15674 * 27 11 9 48 48 H 1.08996 * 109.59059 * 6.44017 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2085 0.0000 4 6 1.2970 2.3844 0.0051 5 6 1.9696 3.5928 -0.0012 6 6 3.3572 3.6010 -0.0067 7 7 4.0419 2.4798 -0.0064 8 6 3.4410 1.2950 -0.0004 9 6 4.2531 0.0597 0.0002 10 8 3.9128 -0.8910 0.6769 11 7 5.3738 -0.0104 -0.7452 12 6 5.8391 1.1555 -1.5087 13 6 6.0352 0.7485 -2.9680 14 6 6.9693 -0.4619 -3.0367 15 6 7.1917 -0.8515 -4.4994 16 6 7.9336 0.2758 -5.2203 17 7 8.1460 -0.0971 -6.6211 18 6 8.7949 0.7619 -7.4674 19 1 9.1498 1.7144 -7.1023 20 6 8.9966 0.4085 -8.7944 21 7 9.6198 1.2343 -9.6081 22 14 8.3834 -1.2393 -9.4257 23 1 6.9967 -1.0892 -9.9354 24 1 9.2663 -1.7083 -10.5238 25 1 8.3998 -2.2303 -8.3199 26 6 6.3396 -1.6375 -2.2859 27 6 6.1501 -1.2559 -0.8144 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 0.2174 2.3528 0.0088 32 1 1.4195 4.5221 -0.0022 33 1 3.8829 4.5445 -0.0112 34 1 5.0966 1.9512 -1.4494 35 1 6.7866 1.5058 -1.0995 36 1 6.4734 1.5781 -3.5227 37 1 5.0703 0.4885 -3.4035 38 1 7.9256 -0.2089 -2.5788 39 1 7.7848 -1.7648 -4.5459 40 1 6.2284 -1.0189 -4.9813 41 1 7.3405 1.1891 -5.1737 42 1 8.8969 0.4431 -4.7384 43 1 7.8276 -0.9527 -6.9489 44 1 9.7611 0.9871 -10.5353 45 1 6.9947 -2.5060 -2.3550 46 1 5.3721 -1.8755 -2.7275 47 1 7.1235 -1.1062 -0.3474 48 1 5.6139 -2.0500 -0.2950 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495434386.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:27 Heat of formation + Delta-G solvation = -16.121941 kcal Electronic energy + Delta-G solvation = -28683.917262 eV Core-core repulsion = 24739.909001 eV Total energy + Delta-G solvation = -3944.008261 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.43767 -39.82661 -38.59931 -37.83361 -35.40683 -33.67773 -32.84292 -31.54547 -31.17813 -30.91216 -28.76902 -27.92671 -25.82777 -24.38416 -23.57717 -23.11375 -22.53796 -21.24614 -20.51996 -19.58304 -18.49231 -17.87282 -17.47857 -17.37217 -16.54654 -16.10338 -15.58328 -15.30944 -14.83651 -14.74630 -14.64711 -14.36671 -14.13498 -13.99004 -13.92741 -13.64035 -13.37025 -13.16419 -12.87269 -12.73675 -12.60791 -12.21624 -11.98777 -11.91339 -11.53313 -11.27995 -11.23766 -11.09621 -10.80044 -10.63878 -10.47818 -10.34082 -10.21780 -10.18974 -9.96783 -9.59458 -9.55873 -8.94230 -8.84685 -8.64705 -7.18340 -5.73968 -3.08792 0.33297 0.75027 2.48578 2.64553 2.80464 3.32541 3.39669 3.42882 3.47124 3.86421 4.11759 4.21331 4.45380 4.62032 4.63354 4.66191 4.69552 4.76244 4.77663 4.87667 4.94281 5.03991 5.10720 5.28239 5.35582 5.43853 5.48833 5.50623 5.55137 5.63867 5.72262 5.76988 5.80146 5.87506 5.94754 6.01974 6.06623 6.16592 6.21617 6.31266 6.46689 6.49877 6.69880 6.81994 6.86985 7.24164 7.35666 8.02776 8.03276 8.45566 9.25256 9.97972 10.18310 11.44661 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015764 B = 0.002400 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.758793 B =11662.629980 C =12044.168570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.286 6.286 3 C 0.132 3.868 4 C -0.172 4.172 5 C -0.109 4.109 6 C 0.057 3.943 7 N -0.414 5.414 8 C 0.051 3.949 9 C 0.580 3.420 10 O -0.527 6.527 11 N -0.592 5.592 12 C 0.101 3.899 13 C -0.135 4.135 14 C -0.082 4.082 15 C -0.125 4.125 16 C 0.157 3.843 17 N -0.759 5.759 18 C -0.242 4.242 19 H 0.090 0.910 20 C 0.002 3.998 21 N -0.936 5.936 22 Si 0.885 3.115 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.277 1.277 26 C -0.129 4.129 27 C 0.113 3.887 28 H 0.106 0.894 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.146 0.854 32 H 0.144 0.856 33 H 0.168 0.832 34 H 0.105 0.895 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.062 0.938 38 H 0.074 0.926 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.028 0.972 42 H 0.025 0.975 43 H 0.360 0.640 44 H 0.259 0.741 45 H 0.076 0.924 46 H 0.065 0.935 47 H 0.070 0.930 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.627 1.976 24.409 31.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.197 6.197 3 C 0.081 3.919 4 C -0.199 4.199 5 C -0.129 4.129 6 C -0.103 4.103 7 N -0.126 5.126 8 C -0.088 4.088 9 C 0.366 3.634 10 O -0.402 6.402 11 N -0.325 5.325 12 C -0.022 4.022 13 C -0.173 4.173 14 C -0.102 4.102 15 C -0.163 4.163 16 C 0.030 3.970 17 N -0.404 5.404 18 C -0.372 4.372 19 H 0.107 0.893 20 C -0.194 4.194 21 N -0.584 5.584 22 Si 0.716 3.284 23 H -0.211 1.211 24 H -0.218 1.218 25 H -0.203 1.203 26 C -0.167 4.167 27 C -0.009 4.009 28 H 0.125 0.875 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.164 0.836 32 H 0.162 0.838 33 H 0.185 0.815 34 H 0.123 0.877 35 H 0.090 0.910 36 H 0.104 0.896 37 H 0.081 0.919 38 H 0.093 0.907 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.046 0.954 42 H 0.042 0.958 43 H 0.192 0.808 44 H 0.069 0.931 45 H 0.095 0.905 46 H 0.084 0.916 47 H 0.088 0.912 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -18.694 1.427 24.692 31.003 hybrid contribution -1.566 -0.822 -0.750 1.921 sum -20.260 0.604 23.941 31.369 Atomic orbital electron populations 1.23216 0.77913 1.04842 1.01389 1.86272 1.21547 1.25032 1.86810 1.19954 0.92151 0.85747 0.94025 1.21753 1.01140 0.91773 1.05208 1.22211 0.95785 0.98467 0.96397 1.22824 0.91493 0.96536 0.99487 1.67814 1.39143 0.97250 1.08363 1.20524 0.88615 0.93053 1.06594 1.17600 0.80075 0.85763 0.79991 1.90795 1.70107 1.37453 1.41883 1.47943 1.24305 1.13711 1.46506 1.22110 1.01472 0.87783 0.90796 1.22035 1.00247 0.99201 0.95812 1.21086 0.98701 0.94501 0.95874 1.21813 1.00782 0.99596 0.94067 1.20683 0.96613 0.94963 0.84782 1.42755 1.70885 1.20093 1.06663 1.19084 1.28563 0.99132 0.90420 0.89256 1.24683 1.00661 0.97867 0.96164 1.69704 1.47250 1.36238 1.05242 0.86525 0.78456 0.85067 0.78369 1.21139 1.21754 1.20332 1.21985 1.01682 0.98582 0.94426 1.21662 0.95715 0.86316 0.97251 0.87538 0.92321 0.92313 0.83586 0.83812 0.81478 0.87693 0.91015 0.89641 0.91911 0.90724 0.91990 0.92181 0.95426 0.95750 0.80765 0.93112 0.90519 0.91599 0.91206 0.89123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.83 101.05 0.99 1.12 16 2 O -0.29 -3.15 9.26 -34.64 -0.32 -3.47 16 3 C 0.13 1.39 6.67 -38.55 -0.26 1.14 16 4 C -0.17 -1.21 9.13 -39.14 -0.36 -1.57 16 5 C -0.11 -0.64 10.10 -39.36 -0.40 -1.03 16 6 C 0.06 0.42 11.17 -17.55 -0.20 0.22 16 7 N -0.41 -4.37 7.26 -9.71 -0.07 -4.44 16 8 C 0.05 0.62 6.02 -82.88 -0.50 0.12 16 9 C 0.58 8.25 7.28 -12.34 -0.09 8.16 16 10 O -0.53 -8.88 15.55 -10.70 -0.17 -9.04 16 11 N -0.59 -7.45 2.98 -174.16 -0.52 -7.97 16 12 C 0.10 1.14 5.98 -3.94 -0.02 1.12 16 13 C -0.13 -1.63 5.13 -26.84 -0.14 -1.77 16 14 C -0.08 -1.02 2.15 -90.58 -0.19 -1.22 16 15 C -0.12 -1.90 4.80 -26.73 -0.13 -2.03 16 16 C 0.16 3.04 6.02 -4.04 -0.02 3.02 16 17 N -0.76 -18.56 5.41 -59.91 -0.32 -18.88 16 18 C -0.24 -7.02 10.47 -15.06 -0.16 -7.18 16 19 H 0.09 2.76 8.06 -52.49 -0.42 2.33 16 20 C 0.00 0.05 5.50 -17.43 -0.10 -0.05 16 21 N -0.94 -29.85 13.97 55.49 0.78 -29.07 16 22 Si 0.89 22.53 27.73 -169.99 -4.71 17.81 16 23 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 25 H -0.28 -6.65 6.52 56.52 0.37 -6.28 16 26 C -0.13 -1.45 5.36 -26.61 -0.14 -1.59 16 27 C 0.11 1.29 6.43 -3.71 -0.02 1.26 16 28 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.24 7.69 -51.93 -0.40 -0.16 16 30 H 0.06 0.25 7.71 -51.93 -0.40 -0.15 16 31 H 0.15 0.60 6.46 -52.48 -0.34 0.26 16 32 H 0.14 0.37 8.06 -52.49 -0.42 -0.05 16 33 H 0.17 0.74 8.06 -52.48 -0.42 0.32 16 34 H 0.11 1.18 4.57 -51.93 -0.24 0.95 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.09 1.07 6.50 -51.93 -0.34 0.73 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.03 0.54 6.53 -51.93 -0.34 0.20 16 42 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.36 8.60 5.53 -40.82 -0.23 8.37 16 44 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 45 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.09 1.10 7.02 -51.93 -0.36 0.74 16 LS Contribution 380.85 15.07 5.74 5.74 Total: -1.00 -36.65 380.85 -8.64 -45.29 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -7.31 Total: 4.30 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: -1.73 Total: -0.27 kcal Atomic # 7 Polarization: -60.22 SS G_CDS: -0.14 Total: -60.36 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: -0.49 Total: -12.51 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -4.71 Total: 17.81 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.65 -8.64 -45.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495434386.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.166 kcal (2) G-P(sol) polarization free energy of solvation -36.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds