Wall clock time and date at job start Tue Mar 31 2020 17:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35641 * 117.00428 * 2 1 4 4 C 1.39353 * 120.53898 * 0.24532 * 3 2 1 5 5 C 1.38301 * 118.44162 * 180.28966 * 4 3 2 6 6 C 1.38762 * 119.44148 * 359.72651 * 5 4 3 7 7 N 1.31375 * 121.07229 * 0.02562 * 6 5 4 8 8 C 1.32857 * 121.69463 * 359.97438 * 7 6 5 9 9 C 1.47829 * 119.78438 * 180.02562 * 8 7 6 10 10 O 1.21560 * 119.99864 * 140.30121 * 9 8 7 11 11 N 1.34778 * 120.00158 * 320.57467 * 9 8 7 12 12 C 1.46924 * 120.63011 * 3.19306 * 11 9 8 13 13 C 1.52757 * 109.00676 * 233.58272 * 12 11 9 14 14 C 1.53040 * 109.38682 * 305.58553 * 13 12 11 15 15 C 1.52995 * 109.45244 * 181.25415 * 14 13 12 16 16 C 1.53004 * 109.47208 * 64.94158 * 15 14 13 17 17 N 1.46497 * 109.46864 * 180.02562 * 16 15 14 18 18 C 1.36940 * 119.99443 * 180.02562 * 17 16 15 19 19 H 1.08001 * 120.00339 * 359.97438 * 18 17 16 20 20 C 1.38808 * 119.99757 * 179.97438 * 18 17 16 21 21 N 1.31623 * 120.00319 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 120.00172 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47149 * 90.00043 * 22 20 18 24 24 H 1.48502 * 109.47100 * 210.00143 * 22 20 18 25 25 H 1.48501 * 109.47208 * 330.00160 * 22 20 18 26 26 C 1.53049 * 109.53331 * 61.23954 * 14 13 12 27 27 C 1.46924 * 120.62900 * 183.47053 * 11 9 8 28 28 H 1.08999 * 109.47129 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47156 * 299.99681 * 1 2 3 30 30 H 1.08992 * 109.47768 * 59.99838 * 1 2 3 31 31 H 1.08004 * 120.77907 * 359.97438 * 4 3 2 32 32 H 1.07990 * 120.27788 * 179.71299 * 5 4 3 33 33 H 1.08006 * 119.46619 * 180.02562 * 6 5 4 34 34 H 1.08999 * 109.58633 * 353.41407 * 12 11 9 35 35 H 1.08990 * 109.58849 * 113.84066 * 12 11 9 36 36 H 1.09002 * 109.56839 * 185.54838 * 13 12 11 37 37 H 1.09005 * 109.36359 * 65.49945 * 13 12 11 38 38 H 1.09003 * 109.45914 * 301.22481 * 14 13 12 39 39 H 1.09004 * 109.46809 * 184.93995 * 15 14 13 40 40 H 1.09004 * 109.47294 * 304.93736 * 15 14 13 41 41 H 1.09000 * 109.46453 * 299.99969 * 16 15 14 42 42 H 1.08999 * 109.46915 * 59.99793 * 16 15 14 43 43 H 0.96999 * 120.00573 * 359.97438 * 17 16 15 44 44 H 0.96994 * 120.00526 * 179.97438 * 21 20 18 45 45 H 1.08998 * 109.49199 * 178.68598 * 26 14 13 46 46 H 1.08992 * 109.52360 * 58.60675 * 26 14 13 47 47 H 1.09001 * 109.58542 * 246.15674 * 27 11 9 48 48 H 1.08996 * 109.59059 * 6.44017 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2085 0.0000 4 6 1.2970 2.3844 0.0051 5 6 1.9696 3.5928 -0.0012 6 6 3.3572 3.6010 -0.0067 7 7 4.0419 2.4798 -0.0064 8 6 3.4410 1.2950 -0.0004 9 6 4.2531 0.0597 0.0002 10 8 3.9128 -0.8910 0.6769 11 7 5.3738 -0.0104 -0.7452 12 6 5.8391 1.1555 -1.5087 13 6 6.0352 0.7485 -2.9680 14 6 6.9693 -0.4619 -3.0367 15 6 7.1917 -0.8515 -4.4994 16 6 7.9336 0.2758 -5.2203 17 7 8.1460 -0.0971 -6.6211 18 6 8.7949 0.7619 -7.4674 19 1 9.1498 1.7144 -7.1023 20 6 8.9966 0.4085 -8.7944 21 7 9.6198 1.2343 -9.6081 22 14 8.3834 -1.2393 -9.4257 23 1 6.9967 -1.0892 -9.9354 24 1 9.2663 -1.7083 -10.5238 25 1 8.3998 -2.2303 -8.3199 26 6 6.3396 -1.6375 -2.2859 27 6 6.1501 -1.2559 -0.8144 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 0.2174 2.3528 0.0088 32 1 1.4195 4.5221 -0.0022 33 1 3.8829 4.5445 -0.0112 34 1 5.0966 1.9512 -1.4494 35 1 6.7866 1.5058 -1.0995 36 1 6.4734 1.5781 -3.5227 37 1 5.0703 0.4885 -3.4035 38 1 7.9256 -0.2089 -2.5788 39 1 7.7848 -1.7648 -4.5459 40 1 6.2284 -1.0189 -4.9813 41 1 7.3405 1.1891 -5.1737 42 1 8.8969 0.4431 -4.7384 43 1 7.8276 -0.9527 -6.9489 44 1 9.7611 0.9871 -10.5353 45 1 6.9947 -2.5060 -2.3550 46 1 5.3721 -1.8755 -2.7275 47 1 7.1235 -1.1062 -0.3474 48 1 5.6139 -2.0500 -0.2950 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495434386.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:26 Heat of formation + Delta-G solvation = -40.376490 kcal Electronic energy + Delta-G solvation = -28684.969018 eV Core-core repulsion = 24739.909001 eV Total energy + Delta-G solvation = -3945.060017 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.15160 -40.70788 -39.23497 -38.93528 -37.01332 -35.08531 -33.70733 -33.13358 -32.19695 -31.70355 -30.21005 -28.41299 -27.00176 -25.55125 -24.43373 -24.02922 -23.80976 -22.63852 -21.67034 -20.49639 -19.60498 -19.11184 -18.67316 -18.07767 -17.35695 -16.86714 -16.60772 -16.31416 -16.15364 -15.89567 -15.83042 -15.35936 -15.15205 -15.01425 -14.84135 -14.72948 -14.54328 -14.40225 -14.19097 -13.87796 -13.42597 -13.38817 -13.16043 -12.92153 -12.57446 -12.49974 -12.46578 -12.30747 -12.15837 -12.06725 -11.83408 -11.73932 -11.40961 -11.37731 -11.23192 -10.92510 -10.82209 -10.37390 -9.75754 -9.48468 -9.28256 -8.03107 -5.36488 -0.30975 0.17911 1.37616 1.41017 1.48660 1.58238 1.89592 2.14183 2.48326 2.66787 3.10778 3.28226 3.52672 3.56286 3.70853 3.80649 3.85205 3.98916 4.03073 4.07128 4.17773 4.26299 4.31851 4.33976 4.35696 4.42827 4.56537 4.57716 4.62618 4.66816 4.76921 4.86428 4.87952 4.94855 4.98966 5.01249 5.05012 5.09329 5.17379 5.26534 5.36716 5.41950 5.53072 5.60635 5.75911 6.13161 6.21479 6.30652 6.70036 7.06025 7.08038 7.85148 8.03994 9.18513 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015764 B = 0.002400 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.758793 B =11662.629980 C =12044.168570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.322 6.322 3 C 0.115 3.885 4 C -0.169 4.169 5 C -0.091 4.091 6 C 0.051 3.949 7 N -0.434 5.434 8 C 0.010 3.990 9 C 0.572 3.428 10 O -0.568 6.568 11 N -0.593 5.593 12 C 0.106 3.894 13 C -0.130 4.130 14 C -0.075 4.075 15 C -0.112 4.112 16 C 0.153 3.847 17 N -0.763 5.763 18 C -0.236 4.236 19 H 0.056 0.944 20 C -0.066 4.066 21 N -0.985 5.985 22 Si 0.957 3.043 23 H -0.278 1.278 24 H -0.295 1.295 25 H -0.252 1.252 26 C -0.119 4.119 27 C 0.111 3.889 28 H 0.112 0.888 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.177 0.823 32 H 0.186 0.814 33 H 0.197 0.803 34 H 0.109 0.891 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.053 0.947 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.059 0.941 41 H 0.028 0.972 42 H 0.023 0.977 43 H 0.365 0.635 44 H 0.258 0.742 45 H 0.092 0.908 46 H 0.056 0.944 47 H 0.084 0.916 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.501 2.153 25.276 33.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.233 6.233 3 C 0.065 3.935 4 C -0.195 4.195 5 C -0.111 4.111 6 C -0.110 4.110 7 N -0.146 5.146 8 C -0.127 4.127 9 C 0.360 3.640 10 O -0.447 6.447 11 N -0.325 5.325 12 C -0.015 4.015 13 C -0.168 4.168 14 C -0.094 4.094 15 C -0.150 4.150 16 C 0.027 3.973 17 N -0.408 5.408 18 C -0.367 4.367 19 H 0.074 0.926 20 C -0.258 4.258 21 N -0.635 5.635 22 Si 0.784 3.216 23 H -0.204 1.204 24 H -0.221 1.221 25 H -0.176 1.176 26 C -0.157 4.157 27 C -0.011 4.011 28 H 0.131 0.869 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.195 0.805 32 H 0.204 0.796 33 H 0.214 0.786 34 H 0.126 0.874 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.072 0.928 38 H 0.101 0.899 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.046 0.954 42 H 0.041 0.959 43 H 0.198 0.802 44 H 0.067 0.933 45 H 0.111 0.889 46 H 0.075 0.925 47 H 0.102 0.898 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -20.578 1.588 25.597 32.881 hybrid contribution -1.027 -0.690 -0.949 1.559 sum -21.605 0.898 24.648 32.789 Atomic orbital electron populations 1.23496 0.75703 1.05923 1.03016 1.86220 1.24045 1.26014 1.87038 1.20187 0.91997 0.86801 0.94504 1.22160 1.02580 0.90833 1.03896 1.22702 0.95325 0.99643 0.93411 1.23466 0.92733 0.96525 0.98262 1.67719 1.40079 0.97546 1.09294 1.20321 0.89342 0.92838 1.10159 1.18072 0.80249 0.86301 0.79420 1.90743 1.71149 1.39148 1.43619 1.48072 1.24078 1.14220 1.46103 1.22105 1.01900 0.87533 0.90008 1.21969 0.99627 0.98944 0.96245 1.21024 0.99268 0.95000 0.94155 1.21688 1.00060 0.98073 0.95144 1.20874 0.97052 0.96713 0.82645 1.42804 1.70340 1.19609 1.08074 1.19075 1.27859 0.98564 0.91210 0.92558 1.25549 1.01514 1.02249 0.96465 1.69887 1.49293 1.38737 1.05600 0.85371 0.77715 0.80404 0.78078 1.20401 1.22118 1.17622 1.21895 1.01404 0.98571 0.93826 1.21714 0.96079 0.85911 0.97381 0.86940 0.90579 0.90624 0.80528 0.79639 0.78643 0.87384 0.90190 0.90066 0.92825 0.89915 0.91394 0.92250 0.95374 0.95921 0.80192 0.93301 0.88912 0.92520 0.89771 0.90178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.83 113.37 1.11 1.25 16 2 O -0.32 -7.18 9.26 -74.24 -0.69 -7.87 16 3 C 0.12 2.40 6.67 22.94 0.15 2.55 16 4 C -0.17 -1.94 9.13 22.55 0.21 -1.73 16 5 C -0.09 -0.74 10.10 22.41 0.23 -0.51 16 6 C 0.05 0.63 11.17 84.89 0.95 1.58 16 7 N -0.43 -8.85 7.26 -184.63 -1.34 -10.19 16 8 C 0.01 0.24 6.02 41.93 0.25 0.49 16 9 C 0.57 16.92 7.28 86.78 0.63 17.55 16 10 O -0.57 -20.21 15.55 11.41 0.18 -20.03 16 11 N -0.59 -15.05 2.98 -823.20 -2.45 -17.50 16 12 C 0.11 2.36 5.98 86.22 0.52 2.88 16 13 C -0.13 -3.04 5.13 30.53 0.16 -2.88 16 14 C -0.08 -1.75 2.15 -10.77 -0.02 -1.78 16 15 C -0.11 -3.21 4.80 30.59 0.15 -3.06 16 16 C 0.15 5.78 6.02 86.38 0.52 6.30 16 17 N -0.76 -36.52 5.41 -343.45 -1.86 -38.38 16 18 C -0.24 -13.80 10.47 84.03 0.88 -12.92 16 19 H 0.06 3.59 8.06 -2.91 -0.02 3.56 16 20 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 21 N -0.98 -63.97 13.97 21.65 0.30 -63.67 16 22 Si 0.96 46.13 27.73 68.60 1.90 48.04 16 23 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 24 H -0.29 -14.29 7.11 99.48 0.71 -13.59 16 25 H -0.25 -10.95 6.52 99.48 0.65 -10.30 16 26 C -0.12 -2.53 5.36 30.67 0.16 -2.36 16 27 C 0.11 2.51 6.43 86.36 0.55 3.06 16 28 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.08 0.49 7.69 -2.39 -0.02 0.47 16 30 H 0.08 0.50 7.71 -2.39 -0.02 0.48 16 31 H 0.18 0.80 6.46 -2.91 -0.02 0.78 16 32 H 0.19 -0.06 8.06 -2.92 -0.02 -0.09 16 33 H 0.20 1.10 8.06 -2.91 -0.02 1.08 16 34 H 0.11 2.40 4.57 -2.39 -0.01 2.39 16 35 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.08 1.97 6.50 -2.39 -0.02 1.96 16 37 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 38 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 40 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.03 1.08 6.53 -2.39 -0.02 1.06 16 42 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.37 16.63 5.53 -92.71 -0.51 16.11 16 44 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 45 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 46 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 47 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 48 H 0.08 2.00 7.02 -2.39 -0.02 1.99 16 Total: -1.00 -82.59 380.85 3.36 -79.23 By element: Atomic # 1 Polarization: 23.10 SS G_CDS: 0.40 Total: 23.50 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: 6.91 Total: 6.88 kcal Atomic # 7 Polarization: -124.39 SS G_CDS: -5.35 Total: -129.74 kcal Atomic # 8 Polarization: -27.40 SS G_CDS: -0.51 Total: -27.91 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 1.90 Total: 48.04 kcal Total: -82.59 3.36 -79.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495434386.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.851 kcal (2) G-P(sol) polarization free energy of solvation -82.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds