Wall clock time and date at job start Tue Mar 31 2020 17:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 117.00403 * 2 1 4 4 C 1.39142 * 120.47845 * 179.97438 * 3 2 1 5 5 C 1.38529 * 118.37706 * 179.75451 * 4 3 2 6 6 C 1.38250 * 119.22068 * 0.52739 * 5 4 3 7 7 C 1.50706 * 119.56025 * 179.73318 * 6 5 4 8 8 C 1.50700 * 109.47222 * 124.72388 * 7 6 5 9 9 O 1.21273 * 119.99954 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99981 * 180.02562 * 8 7 6 11 11 C 1.46494 * 120.00315 * 180.02562 * 10 8 7 12 12 C 1.52996 * 109.47506 * 184.55142 * 11 10 8 13 13 N 1.46499 * 110.81777 * 300.97607 * 12 11 10 14 14 C 1.36941 * 119.99829 * 300.64681 * 13 12 11 15 15 H 1.07999 * 120.00142 * 354.70303 * 14 13 12 16 16 C 1.38810 * 120.00199 * 174.70915 * 14 13 12 17 17 N 1.31624 * 119.99908 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00339 * 179.97438 * 16 14 13 19 19 H 1.48489 * 109.47278 * 89.99436 * 18 16 14 20 20 H 1.48495 * 109.47135 * 209.99985 * 18 16 14 21 21 H 1.48497 * 109.46740 * 329.99339 * 18 16 14 22 22 C 1.54891 * 110.75843 * 64.30824 * 12 11 10 23 23 C 1.54265 * 104.19712 * 156.25885 * 22 12 11 24 24 C 1.53873 * 106.59973 * 336.38881 * 23 22 12 25 25 C 1.54267 * 106.59565 * 0.02562 * 24 23 22 26 26 N 1.31851 * 120.89083 * 359.45681 * 6 5 4 27 27 C 1.31842 * 121.77315 * 0.27346 * 26 6 5 28 28 H 1.08998 * 109.47270 * 59.99809 * 1 2 3 29 29 H 1.08999 * 109.47414 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46923 * 300.00125 * 1 2 3 31 31 H 1.08005 * 120.80607 * 0.02562 * 4 3 2 32 32 H 1.07995 * 120.39146 * 180.25758 * 5 4 3 33 33 H 1.09002 * 109.46595 * 4.72606 * 7 6 5 34 34 H 1.08999 * 109.47476 * 244.73232 * 7 6 5 35 35 H 0.97005 * 120.00111 * 0.02562 * 10 8 7 36 36 H 1.08997 * 109.47243 * 64.54934 * 11 10 8 37 37 H 1.09000 * 109.47069 * 304.55243 * 11 10 8 38 38 H 0.97000 * 120.00228 * 120.63998 * 13 12 11 39 39 H 0.96995 * 120.00244 * 180.02562 * 17 16 14 40 40 H 1.09003 * 110.48062 * 37.58045 * 22 12 11 41 41 H 1.09000 * 110.48719 * 274.93814 * 22 12 11 42 42 H 1.09002 * 110.03139 * 95.67908 * 23 22 12 43 43 H 1.09005 * 110.03123 * 217.10516 * 23 22 12 44 44 H 1.09004 * 110.02939 * 119.28285 * 24 23 22 45 45 H 1.08998 * 110.03542 * 240.71555 * 24 23 22 46 46 H 1.09009 * 110.48650 * 142.28712 * 25 24 23 47 47 H 1.09001 * 110.48172 * 264.92280 * 25 24 23 48 48 H 1.08003 * 119.65811 * 180.02562 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 3.4349 1.2952 0.0005 5 6 4.0183 2.5517 -0.0047 6 6 3.2081 3.6719 0.0008 7 6 3.8346 5.0426 0.0013 8 6 3.3028 5.8384 -1.1627 9 8 2.4943 5.3417 -1.9180 10 7 3.7257 7.1021 -1.3644 11 6 3.2084 7.8760 -2.4955 12 6 3.9277 9.2246 -2.5624 13 7 3.7347 9.9797 -1.3219 14 6 2.4708 10.3092 -0.9105 15 1 1.6227 10.0882 -1.5415 16 6 2.2797 10.9273 0.3176 17 7 3.3133 11.1963 1.0869 18 14 0.5557 11.3774 0.8786 19 1 -0.0297 10.2435 1.6379 20 1 0.6165 12.5780 1.7503 21 1 -0.2902 11.6687 -0.3067 22 6 5.4357 9.0285 -2.8566 23 6 5.8758 10.3670 -3.4849 24 6 4.6099 11.0128 -4.0750 25 6 3.4447 10.0446 -3.7842 26 7 1.8946 3.5574 0.0003 27 6 1.3004 2.3805 -0.0002 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 4.0433 0.4028 0.0005 32 1 5.0933 2.6550 -0.0087 33 1 4.9168 4.9473 -0.0878 34 1 3.5904 5.5534 0.9327 35 1 4.3727 7.4993 -0.7605 36 1 2.1389 8.0407 -2.3643 37 1 3.3804 7.3262 -3.4209 38 1 4.5022 10.2462 -0.7919 39 1 3.1798 11.6279 1.9453 40 1 5.5836 8.2097 -3.5607 41 1 5.9835 8.8423 -1.9329 42 1 6.3041 11.0153 -2.7205 43 1 6.6057 10.1868 -4.2741 44 1 4.4239 11.9746 -3.5969 45 1 4.7255 11.1462 -5.1506 46 1 2.5396 10.6000 -3.5377 47 1 3.2709 9.3896 -4.6379 48 1 0.2217 2.3264 -0.0011 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495939199.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:26 Heat of formation + Delta-G solvation = -34.612685 kcal Electronic energy + Delta-G solvation = -28682.393402 eV Core-core repulsion = 24737.583323 eV Total energy + Delta-G solvation = -3944.810080 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.79502 -39.33576 -38.42028 -37.75067 -33.95550 -33.20145 -32.47771 -32.37618 -30.51528 -28.66351 -28.21790 -27.83557 -27.00450 -24.31881 -23.52665 -23.29054 -22.15860 -20.20991 -19.47355 -18.68563 -18.31247 -17.27396 -17.03277 -16.52093 -16.19763 -16.01449 -15.53855 -15.00153 -14.80723 -14.55800 -14.28725 -14.22191 -14.06160 -13.77805 -13.35580 -13.16760 -13.06649 -12.69034 -12.48558 -12.26139 -12.20575 -12.06265 -11.67419 -11.40419 -11.33026 -11.06800 -10.84555 -10.71753 -10.60165 -10.48721 -10.31641 -9.88932 -9.80323 -9.76673 -9.62234 -9.45210 -9.25611 -8.88742 -8.42648 -8.31439 -6.99380 -5.79064 -3.07578 1.04017 1.24297 2.96320 3.20094 3.44259 3.50362 3.51244 3.58724 3.96662 4.30021 4.53819 4.58282 4.62137 4.77704 4.88183 4.96100 5.15862 5.16550 5.17278 5.24595 5.25871 5.38952 5.42083 5.49128 5.57897 5.65944 5.68919 5.86121 5.90290 5.92975 6.00050 6.06230 6.16902 6.25938 6.30755 6.38070 6.40564 6.50374 6.59472 6.73008 6.80746 6.84955 7.01666 7.04242 7.17038 7.72861 8.03119 8.17205 8.39654 8.83431 9.51883 10.05593 10.41437 11.43055 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012170 B = 0.002942 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.200183 B = 9516.459605 C =10880.017349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.315 6.315 3 C 0.066 3.934 4 C -0.110 4.110 5 C -0.128 4.128 6 C 0.115 3.885 7 C -0.091 4.091 8 C 0.515 3.485 9 O -0.541 6.541 10 N -0.704 5.704 11 C 0.124 3.876 12 C 0.188 3.812 13 N -0.706 5.706 14 C -0.230 4.230 15 H 0.069 0.931 16 C -0.009 4.009 17 N -0.932 5.932 18 Si 0.901 3.099 19 H -0.290 1.290 20 H -0.293 1.293 21 H -0.283 1.283 22 C -0.122 4.122 23 C -0.117 4.117 24 C -0.111 4.111 25 C -0.131 4.131 26 N -0.417 5.417 27 C 0.027 3.973 28 H 0.058 0.942 29 H 0.101 0.899 30 H 0.058 0.942 31 H 0.141 0.859 32 H 0.142 0.858 33 H 0.105 0.895 34 H 0.112 0.888 35 H 0.402 0.598 36 H 0.063 0.937 37 H 0.052 0.948 38 H 0.385 0.615 39 H 0.254 0.746 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.051 0.949 44 H 0.063 0.937 45 H 0.048 0.952 46 H 0.073 0.927 47 H 0.051 0.949 48 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.772 -17.235 -3.667 18.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.227 6.227 3 C 0.019 3.981 4 C -0.136 4.136 5 C -0.148 4.148 6 C -0.024 4.024 7 C -0.131 4.131 8 C 0.300 3.700 9 O -0.418 6.418 10 N -0.355 5.355 11 C -0.003 4.003 12 C 0.096 3.904 13 N -0.347 5.347 14 C -0.361 4.361 15 H 0.087 0.913 16 C -0.205 4.205 17 N -0.580 5.580 18 Si 0.732 3.268 19 H -0.218 1.218 20 H -0.219 1.219 21 H -0.208 1.208 22 C -0.160 4.160 23 C -0.154 4.154 24 C -0.149 4.149 25 C -0.171 4.171 26 N -0.126 5.126 27 C -0.132 4.132 28 H 0.077 0.923 29 H 0.119 0.881 30 H 0.076 0.924 31 H 0.158 0.842 32 H 0.160 0.840 33 H 0.123 0.877 34 H 0.130 0.870 35 H 0.237 0.763 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.219 0.781 39 H 0.064 0.936 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.069 0.931 44 H 0.082 0.918 45 H 0.067 0.933 46 H 0.091 0.909 47 H 0.070 0.930 48 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 2.580 -16.985 -4.174 17.680 hybrid contribution -0.292 0.001 0.902 0.948 sum 2.287 -16.984 -3.273 17.447 Atomic orbital electron populations 1.23107 0.78076 1.04127 1.01788 1.86038 1.21611 1.26259 1.88836 1.20090 0.93315 0.85680 0.99036 1.20818 0.91598 0.98632 1.02569 1.21792 1.01244 0.91633 1.00124 1.20533 0.89185 0.94442 0.98193 1.20563 1.00788 0.91713 1.00085 1.20099 0.81909 0.82148 0.85889 1.90675 1.33394 1.70547 1.47229 1.45720 1.45930 1.12890 1.30910 1.21712 0.99332 0.91939 0.87272 1.20734 0.91764 0.89435 0.88492 1.42289 1.06205 1.63944 1.22310 1.19077 0.85308 1.31904 0.99792 0.91305 1.24664 0.96828 1.01970 0.97005 1.69645 1.28254 1.48065 1.12070 0.86282 0.84516 0.77578 0.78400 1.21775 1.21940 1.20826 1.22549 0.96303 0.97086 1.00071 1.22028 0.97359 0.96779 0.99280 1.21937 0.94732 0.99511 0.98683 1.22748 0.98911 0.98080 0.97406 1.67344 1.11579 1.26096 1.07532 1.22898 1.00480 0.86966 1.02888 0.92312 0.88056 0.92378 0.84155 0.84041 0.87670 0.86987 0.76288 0.91848 0.92957 0.78085 0.93626 0.91826 0.91804 0.91987 0.93050 0.91830 0.93343 0.90876 0.93026 0.82760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.82 101.05 0.99 1.16 16 2 O -0.32 -3.38 10.51 -19.44 -0.20 -3.58 16 3 C 0.07 0.81 6.71 -39.07 -0.26 0.54 16 4 C -0.11 -1.22 10.13 -39.14 -0.40 -1.62 16 5 C -0.13 -1.45 9.70 -39.47 -0.38 -1.83 16 6 C 0.12 1.67 5.76 -82.58 -0.48 1.19 16 7 C -0.09 -1.23 6.10 -29.03 -0.18 -1.41 16 8 C 0.51 9.09 7.76 -10.99 -0.09 9.01 16 9 O -0.54 -11.55 15.33 5.56 0.09 -11.46 16 10 N -0.70 -12.21 5.26 -60.30 -0.32 -12.53 16 11 C 0.12 2.30 4.46 -4.05 -0.02 2.28 16 12 C 0.19 3.39 0.48 -129.84 -0.06 3.33 16 13 N -0.71 -15.66 4.80 -45.41 -0.22 -15.88 16 14 C -0.23 -5.91 8.62 -15.06 -0.13 -6.04 16 15 H 0.07 1.80 7.16 -52.49 -0.38 1.42 16 16 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 17 N -0.93 -26.57 13.06 55.49 0.72 -25.84 16 18 Si 0.90 22.22 29.55 -169.99 -5.02 17.20 16 19 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 20 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 22 C -0.12 -1.84 5.46 -25.07 -0.14 -1.98 16 23 C -0.12 -1.71 6.78 -25.61 -0.17 -1.88 16 24 C -0.11 -1.74 6.78 -25.61 -0.17 -1.92 16 25 C -0.13 -2.27 5.85 -25.09 -0.15 -2.42 16 26 N -0.42 -6.91 9.21 -9.35 -0.09 -6.99 16 27 C 0.03 0.37 10.22 -17.37 -0.18 0.19 16 28 H 0.06 0.40 7.68 -51.93 -0.40 0.00 16 29 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.37 7.68 -51.93 -0.40 -0.03 16 31 H 0.14 1.20 8.06 -52.48 -0.42 0.77 16 32 H 0.14 1.13 7.94 -52.49 -0.42 0.71 16 33 H 0.11 1.02 7.87 -51.93 -0.41 0.61 16 34 H 0.11 1.48 8.14 -51.93 -0.42 1.06 16 35 H 0.40 6.63 8.11 -40.82 -0.33 6.29 16 36 H 0.06 1.37 7.50 -51.93 -0.39 0.98 16 37 H 0.05 0.93 8.13 -51.93 -0.42 0.51 16 38 H 0.38 9.14 7.71 -40.82 -0.31 8.83 16 39 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 40 H 0.06 0.88 8.04 -51.93 -0.42 0.46 16 41 H 0.06 0.95 8.09 -51.93 -0.42 0.53 16 42 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.07 1.43 7.23 -51.92 -0.38 1.05 16 47 H 0.05 0.80 8.05 -51.93 -0.42 0.39 16 48 H 0.16 1.77 6.32 -52.48 -0.33 1.44 16 LS Contribution 391.92 15.07 5.91 5.91 Total: -1.00 -33.06 391.92 -8.55 -41.61 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: -7.51 Total: 13.31 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: -1.90 Total: -1.73 kcal Atomic # 7 Polarization: -61.35 SS G_CDS: 0.10 Total: -61.24 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: -0.12 Total: -15.05 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.06 -8.55 -41.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495939199.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.999 kcal (2) G-P(sol) polarization free energy of solvation -33.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds