Wall clock time and date at job start Tue Mar 31 2020 17:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 117.00403 * 2 1 4 4 C 1.39142 * 120.47845 * 179.97438 * 3 2 1 5 5 C 1.38529 * 118.37706 * 179.75451 * 4 3 2 6 6 C 1.38250 * 119.22068 * 0.52739 * 5 4 3 7 7 C 1.50706 * 119.56025 * 179.73318 * 6 5 4 8 8 C 1.50700 * 109.47222 * 124.72388 * 7 6 5 9 9 O 1.21273 * 119.99954 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99981 * 180.02562 * 8 7 6 11 11 C 1.46494 * 120.00315 * 180.02562 * 10 8 7 12 12 C 1.52996 * 109.47506 * 184.55142 * 11 10 8 13 13 N 1.46499 * 110.81777 * 300.97607 * 12 11 10 14 14 C 1.36941 * 119.99829 * 300.64681 * 13 12 11 15 15 H 1.07999 * 120.00142 * 354.70303 * 14 13 12 16 16 C 1.38810 * 120.00199 * 174.70915 * 14 13 12 17 17 N 1.31624 * 119.99908 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00339 * 179.97438 * 16 14 13 19 19 H 1.48489 * 109.47278 * 89.99436 * 18 16 14 20 20 H 1.48495 * 109.47135 * 209.99985 * 18 16 14 21 21 H 1.48497 * 109.46740 * 329.99339 * 18 16 14 22 22 C 1.54891 * 110.75843 * 64.30824 * 12 11 10 23 23 C 1.54265 * 104.19712 * 156.25885 * 22 12 11 24 24 C 1.53873 * 106.59973 * 336.38881 * 23 22 12 25 25 C 1.54267 * 106.59565 * 0.02562 * 24 23 22 26 26 N 1.31851 * 120.89083 * 359.45681 * 6 5 4 27 27 C 1.31842 * 121.77315 * 0.27346 * 26 6 5 28 28 H 1.08998 * 109.47270 * 59.99809 * 1 2 3 29 29 H 1.08999 * 109.47414 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46923 * 300.00125 * 1 2 3 31 31 H 1.08005 * 120.80607 * 0.02562 * 4 3 2 32 32 H 1.07995 * 120.39146 * 180.25758 * 5 4 3 33 33 H 1.09002 * 109.46595 * 4.72606 * 7 6 5 34 34 H 1.08999 * 109.47476 * 244.73232 * 7 6 5 35 35 H 0.97005 * 120.00111 * 0.02562 * 10 8 7 36 36 H 1.08997 * 109.47243 * 64.54934 * 11 10 8 37 37 H 1.09000 * 109.47069 * 304.55243 * 11 10 8 38 38 H 0.97000 * 120.00228 * 120.63998 * 13 12 11 39 39 H 0.96995 * 120.00244 * 180.02562 * 17 16 14 40 40 H 1.09003 * 110.48062 * 37.58045 * 22 12 11 41 41 H 1.09000 * 110.48719 * 274.93814 * 22 12 11 42 42 H 1.09002 * 110.03139 * 95.67908 * 23 22 12 43 43 H 1.09005 * 110.03123 * 217.10516 * 23 22 12 44 44 H 1.09004 * 110.02939 * 119.28285 * 24 23 22 45 45 H 1.08998 * 110.03542 * 240.71555 * 24 23 22 46 46 H 1.09009 * 110.48650 * 142.28712 * 25 24 23 47 47 H 1.09001 * 110.48172 * 264.92280 * 25 24 23 48 48 H 1.08003 * 119.65811 * 180.02562 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 3.4349 1.2952 0.0005 5 6 4.0183 2.5517 -0.0047 6 6 3.2081 3.6719 0.0008 7 6 3.8346 5.0426 0.0013 8 6 3.3028 5.8384 -1.1627 9 8 2.4943 5.3417 -1.9180 10 7 3.7257 7.1021 -1.3644 11 6 3.2084 7.8760 -2.4955 12 6 3.9277 9.2246 -2.5624 13 7 3.7347 9.9797 -1.3219 14 6 2.4708 10.3092 -0.9105 15 1 1.6227 10.0882 -1.5415 16 6 2.2797 10.9273 0.3176 17 7 3.3133 11.1963 1.0869 18 14 0.5557 11.3774 0.8786 19 1 -0.0297 10.2435 1.6379 20 1 0.6165 12.5780 1.7503 21 1 -0.2902 11.6687 -0.3067 22 6 5.4357 9.0285 -2.8566 23 6 5.8758 10.3670 -3.4849 24 6 4.6099 11.0128 -4.0750 25 6 3.4447 10.0446 -3.7842 26 7 1.8946 3.5574 0.0003 27 6 1.3004 2.3805 -0.0002 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 4.0433 0.4028 0.0005 32 1 5.0933 2.6550 -0.0087 33 1 4.9168 4.9473 -0.0878 34 1 3.5904 5.5534 0.9327 35 1 4.3727 7.4993 -0.7605 36 1 2.1389 8.0407 -2.3643 37 1 3.3804 7.3262 -3.4209 38 1 4.5022 10.2462 -0.7919 39 1 3.1798 11.6279 1.9453 40 1 5.5836 8.2097 -3.5607 41 1 5.9835 8.8423 -1.9329 42 1 6.3041 11.0153 -2.7205 43 1 6.6057 10.1868 -4.2741 44 1 4.4239 11.9746 -3.5969 45 1 4.7255 11.1462 -5.1506 46 1 2.5396 10.6000 -3.5377 47 1 3.2709 9.3896 -4.6379 48 1 0.2217 2.3264 -0.0011 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495939199.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:25 Heat of formation + Delta-G solvation = -57.473583 kcal Electronic energy + Delta-G solvation = -28683.384725 eV Core-core repulsion = 24737.583323 eV Total energy + Delta-G solvation = -3945.801403 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.73306 -40.67507 -39.60481 -38.89478 -35.45052 -35.02763 -33.44951 -33.37397 -32.24180 -29.98590 -29.52666 -28.83204 -28.01023 -25.95074 -25.06915 -24.31093 -23.17227 -21.53937 -20.80700 -20.19105 -19.13857 -18.95624 -18.25754 -17.78700 -17.39029 -16.94205 -16.80175 -16.23221 -16.21478 -15.99523 -15.67569 -15.24483 -15.14199 -15.06734 -15.00826 -14.45430 -14.06806 -13.92922 -13.87672 -13.55627 -13.13122 -13.09480 -12.95610 -12.82653 -12.76485 -12.41003 -12.32559 -12.31031 -12.27088 -11.90395 -11.77685 -11.57794 -11.31906 -11.11190 -10.94755 -10.77423 -10.62859 -10.30512 -9.81984 -9.34960 -8.92292 -7.89463 -5.13795 0.11738 0.33031 1.43720 1.46916 1.51770 1.83126 2.22568 2.39825 2.57693 2.87207 3.35026 3.42572 3.65981 3.74161 3.80473 3.84584 3.93841 4.00183 4.12951 4.17053 4.32652 4.33447 4.40172 4.50098 4.53186 4.59590 4.64801 4.68352 4.72441 4.74237 4.82892 4.91017 4.96800 5.03390 5.06254 5.11395 5.17368 5.23532 5.26469 5.44501 5.50141 5.52927 5.62696 5.66167 5.75687 6.20263 6.34613 6.78208 7.07901 7.42585 7.45821 8.16435 8.41841 9.32850 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012170 B = 0.002942 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.200183 B = 9516.459605 C =10880.017349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.321 6.321 3 C 0.066 3.934 4 C -0.113 4.113 5 C -0.116 4.116 6 C 0.086 3.914 7 C -0.083 4.083 8 C 0.509 3.491 9 O -0.582 6.582 10 N -0.701 5.701 11 C 0.132 3.868 12 C 0.182 3.818 13 N -0.707 5.707 14 C -0.211 4.211 15 H 0.059 0.941 16 C -0.062 4.062 17 N -0.958 5.958 18 Si 0.946 3.054 19 H -0.298 1.298 20 H -0.295 1.295 21 H -0.279 1.279 22 C -0.113 4.113 23 C -0.113 4.113 24 C -0.108 4.108 25 C -0.132 4.132 26 N -0.466 5.466 27 C 0.004 3.996 28 H 0.058 0.942 29 H 0.128 0.872 30 H 0.063 0.937 31 H 0.170 0.830 32 H 0.181 0.819 33 H 0.150 0.850 34 H 0.111 0.889 35 H 0.408 0.592 36 H 0.023 0.977 37 H 0.064 0.936 38 H 0.378 0.622 39 H 0.248 0.752 40 H 0.086 0.914 41 H 0.068 0.932 42 H 0.050 0.950 43 H 0.082 0.918 44 H 0.039 0.961 45 H 0.074 0.926 46 H 0.041 0.959 47 H 0.072 0.928 48 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.804 -19.064 -4.585 20.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.234 6.234 3 C 0.019 3.981 4 C -0.139 4.139 5 C -0.135 4.135 6 C -0.053 4.053 7 C -0.123 4.123 8 C 0.296 3.704 9 O -0.463 6.463 10 N -0.351 5.351 11 C 0.005 3.995 12 C 0.091 3.909 13 N -0.347 5.347 14 C -0.344 4.344 15 H 0.077 0.923 16 C -0.255 4.255 17 N -0.609 5.609 18 Si 0.778 3.222 19 H -0.226 1.226 20 H -0.222 1.222 21 H -0.204 1.204 22 C -0.150 4.150 23 C -0.150 4.150 24 C -0.146 4.146 25 C -0.172 4.172 26 N -0.175 5.175 27 C -0.155 4.155 28 H 0.077 0.923 29 H 0.146 0.854 30 H 0.082 0.918 31 H 0.188 0.812 32 H 0.198 0.802 33 H 0.168 0.832 34 H 0.129 0.871 35 H 0.244 0.756 36 H 0.042 0.958 37 H 0.082 0.918 38 H 0.211 0.789 39 H 0.057 0.943 40 H 0.104 0.896 41 H 0.087 0.913 42 H 0.069 0.931 43 H 0.100 0.900 44 H 0.058 0.942 45 H 0.093 0.907 46 H 0.060 0.940 47 H 0.091 0.909 48 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 4.608 -18.826 -5.118 20.047 hybrid contribution -0.991 0.465 1.086 1.541 sum 3.618 -18.362 -4.033 19.144 Atomic orbital electron populations 1.23381 0.76401 1.05998 1.02096 1.86035 1.23391 1.25462 1.88500 1.20234 0.94054 0.85657 0.98177 1.21262 0.91411 0.99754 1.01469 1.22154 1.02863 0.90549 0.97940 1.20819 0.89090 0.95644 0.99761 1.20624 1.03172 0.90835 0.97688 1.20867 0.81059 0.82049 0.86392 1.90650 1.35181 1.71379 1.49042 1.45729 1.45835 1.12924 1.30647 1.21536 0.97045 0.92544 0.88357 1.20964 0.94459 0.88499 0.86948 1.42309 1.04572 1.64223 1.23612 1.19192 0.86526 1.29668 0.98979 0.92255 1.25159 0.99031 1.03573 0.97759 1.69738 1.29227 1.49777 1.12206 0.85537 0.82029 0.76781 0.77829 1.22598 1.22215 1.20429 1.22511 0.93300 0.98243 1.00982 1.22017 0.97248 0.95942 0.99827 1.21920 0.94525 0.97880 1.00279 1.22731 0.98353 0.98389 0.97701 1.67248 1.13293 1.27766 1.09206 1.23057 1.01171 0.87153 1.04070 0.92316 0.85391 0.91827 0.81235 0.80157 0.83214 0.87102 0.75644 0.95840 0.91776 0.78888 0.94318 0.89564 0.91312 0.93064 0.89960 0.94177 0.90695 0.93969 0.90892 0.82090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.82 113.37 1.11 1.32 16 2 O -0.32 -6.46 10.51 -92.48 -0.97 -7.43 16 3 C 0.07 1.56 6.71 22.60 0.15 1.71 16 4 C -0.11 -2.23 10.13 22.56 0.23 -2.00 16 5 C -0.12 -2.31 9.70 22.34 0.22 -2.10 16 6 C 0.09 2.40 5.76 42.56 0.25 2.64 16 7 C -0.08 -2.14 6.10 29.10 0.18 -1.96 16 8 C 0.51 17.84 7.76 87.66 0.68 18.52 16 9 O -0.58 -25.27 15.33 -3.01 -0.05 -25.31 16 10 N -0.70 -23.96 5.26 -463.09 -2.43 -26.40 16 11 C 0.13 4.88 4.46 86.38 0.38 5.26 16 12 C 0.18 6.43 0.48 4.88 0.00 6.44 16 13 N -0.71 -31.54 4.80 -297.57 -1.43 -32.97 16 14 C -0.21 -11.08 8.62 84.03 0.72 -10.36 16 15 H 0.06 3.20 7.16 -2.91 -0.02 3.18 16 16 C -0.06 -3.47 5.50 84.86 0.47 -3.00 16 17 N -0.96 -55.51 13.06 21.65 0.28 -55.23 16 18 Si 0.95 46.70 29.55 68.60 2.03 48.72 16 19 H -0.30 -14.93 7.11 99.48 0.71 -14.23 16 20 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 21 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 22 C -0.11 -3.09 5.46 31.67 0.17 -2.92 16 23 C -0.11 -2.98 6.78 31.32 0.21 -2.77 16 24 C -0.11 -3.21 6.78 31.32 0.21 -3.00 16 25 C -0.13 -4.45 5.85 31.66 0.19 -4.26 16 26 N -0.47 -15.71 9.21 -183.48 -1.69 -17.40 16 27 C 0.00 0.11 10.22 84.80 0.87 0.97 16 28 H 0.06 0.78 7.68 -2.39 -0.02 0.76 16 29 H 0.13 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.06 0.77 7.68 -2.38 -0.02 0.75 16 31 H 0.17 2.28 8.06 -2.91 -0.02 2.25 16 32 H 0.18 2.04 7.94 -2.91 -0.02 2.02 16 33 H 0.15 2.38 7.87 -2.39 -0.02 2.36 16 34 H 0.11 2.86 8.14 -2.39 -0.02 2.84 16 35 H 0.41 13.04 8.11 -92.70 -0.75 12.29 16 36 H 0.02 1.04 7.50 -2.39 -0.02 1.03 16 37 H 0.06 2.22 8.13 -2.39 -0.02 2.20 16 38 H 0.38 18.00 7.71 -92.71 -0.72 17.28 16 39 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 40 H 0.09 2.03 8.04 -2.39 -0.02 2.01 16 41 H 0.07 1.85 8.09 -2.39 -0.02 1.83 16 42 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 44 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 46 H 0.04 1.67 7.23 -2.38 -0.02 1.65 16 47 H 0.07 2.15 8.05 -2.39 -0.02 2.13 16 48 H 0.16 3.87 6.32 -2.91 -0.02 3.86 16 Total: -1.00 -74.50 391.92 1.29 -73.20 By element: Atomic # 1 Polarization: 38.81 SS G_CDS: -0.49 Total: 38.32 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: 6.04 Total: 4.49 kcal Atomic # 7 Polarization: -126.73 SS G_CDS: -5.27 Total: -132.00 kcal Atomic # 8 Polarization: -31.73 SS G_CDS: -1.02 Total: -32.74 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.72 kcal Total: -74.50 1.29 -73.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495939199.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.731 kcal (2) G-P(sol) polarization free energy of solvation -74.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds