Wall clock time and date at job start Tue Mar 31 2020 17:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35429 * 117.00117 * 2 1 4 4 N 1.32241 * 119.79994 * 0.02732 * 3 2 1 5 5 C 1.31876 * 121.80076 * 179.97438 * 4 3 2 6 6 C 1.38354 * 121.18662 * 359.97438 * 5 4 3 7 7 C 1.38338 * 119.46057 * 359.74398 * 6 5 4 8 8 C 1.39989 * 118.34466 * 0.49543 * 7 6 5 9 9 C 1.47524 * 120.59628 * 179.78070 * 8 7 6 10 10 O 1.21596 * 119.99902 * 144.66642 * 9 8 7 11 11 N 1.34775 * 120.00041 * 324.67273 * 9 8 7 12 12 C 1.46924 * 120.63128 * 4.42909 * 11 9 8 13 13 C 1.53184 * 108.78084 * 233.61431 * 12 11 9 14 14 C 1.53050 * 109.31237 * 305.36894 * 13 12 11 15 15 C 1.53038 * 109.53843 * 61.36417 * 14 13 12 16 16 C 1.46928 * 120.63013 * 184.43947 * 11 9 8 17 17 H 1.08995 * 109.70347 * 246.24622 * 16 11 9 18 18 C 1.53005 * 109.58726 * 6.60049 * 16 11 9 19 19 C 1.52992 * 109.46998 * 177.83305 * 18 16 11 20 20 N 1.46501 * 109.47050 * 174.89650 * 19 18 16 21 21 C 1.36945 * 120.00066 * 179.97438 * 20 19 18 22 22 H 1.07993 * 119.99550 * 0.02562 * 21 20 19 23 23 C 1.38810 * 119.99843 * 179.97438 * 21 20 19 24 24 N 1.31619 * 119.99888 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00017 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47383 * 180.02562 * 25 23 21 27 27 H 1.48502 * 109.47122 * 300.00848 * 25 23 21 28 28 H 1.48501 * 109.46855 * 60.00012 * 25 23 21 29 29 H 1.09007 * 109.46988 * 299.99786 * 1 2 3 30 30 H 1.08999 * 109.47204 * 59.99455 * 1 2 3 31 31 H 1.09001 * 109.47597 * 179.97438 * 1 2 3 32 32 H 1.07999 * 119.40443 * 179.97438 * 5 4 3 33 33 H 1.08006 * 120.27231 * 180.02562 * 6 5 4 34 34 H 1.07999 * 120.82972 * 180.26163 * 7 6 5 35 35 H 1.09010 * 109.58279 * 113.82415 * 12 11 9 36 36 H 1.08999 * 109.70568 * 353.47606 * 12 11 9 37 37 H 1.09003 * 109.49907 * 185.41617 * 13 12 11 38 38 H 1.08994 * 109.49748 * 65.31676 * 13 12 11 39 39 H 1.09000 * 109.45632 * 301.34477 * 14 13 12 40 40 H 1.09004 * 109.45592 * 181.38732 * 14 13 12 41 41 H 1.08994 * 109.50036 * 178.68731 * 15 14 13 42 42 H 1.09001 * 109.49733 * 58.58609 * 15 14 13 43 43 H 1.08996 * 109.46925 * 57.82933 * 18 16 11 44 44 H 1.09006 * 109.46626 * 297.82898 * 18 16 11 45 45 H 1.08997 * 109.48052 * 54.89231 * 19 18 16 46 46 H 1.09003 * 109.46917 * 294.88930 * 19 18 16 47 47 H 0.96999 * 119.99876 * 359.97438 * 20 19 18 48 48 H 0.97001 * 119.99675 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0438 1.2067 0.0000 4 7 1.3197 2.3132 0.0005 5 6 1.8771 3.5084 0.0011 6 6 3.2525 3.6575 0.0016 7 6 4.0588 2.5334 0.0070 8 6 3.4449 1.2752 0.0010 9 6 4.2570 0.0436 0.0015 10 8 3.8717 -0.9384 0.6063 11 7 5.4259 0.0068 -0.6684 12 6 5.9520 1.2126 -1.3226 13 6 6.2434 0.8894 -2.7913 14 6 7.1734 -0.3238 -2.8678 15 6 6.4869 -1.5356 -2.2336 16 6 6.1982 -1.2398 -0.7584 17 1 7.1378 -1.1299 -0.2171 18 6 5.3893 -2.3892 -0.1536 19 6 6.1730 -3.6952 -0.2974 20 7 5.4557 -4.7731 0.3882 21 6 5.9698 -6.0424 0.3937 22 1 6.9042 -6.2486 -0.1069 23 6 5.2904 -7.0635 1.0437 24 7 4.1519 -6.8119 1.6543 25 14 5.9920 -8.7947 1.0520 26 1 5.0828 -9.6937 1.8071 27 1 6.1225 -9.2826 -0.3445 28 1 7.3285 -8.7840 1.6994 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.2484 4.3866 0.0011 33 1 3.6933 4.6435 0.0024 34 1 5.1349 2.6241 0.0117 35 1 6.8716 1.5251 -0.8277 36 1 5.2152 2.0137 -1.2640 37 1 6.7236 1.7462 -3.2641 38 1 5.3096 0.6650 -3.3067 39 1 8.0971 -0.1075 -2.3311 40 1 7.4021 -0.5407 -3.9112 41 1 7.1402 -2.4048 -2.3092 42 1 5.5507 -1.7372 -2.7542 43 1 4.4369 -2.4774 -0.6762 44 1 5.2072 -2.1890 0.9023 45 1 7.1614 -3.5768 0.1466 46 1 6.2765 -3.9424 -1.3540 47 1 4.6166 -4.5877 0.8381 48 1 3.6769 -7.5256 2.1082 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496415211.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:14 Heat of formation + Delta-G solvation = 12.387121 kcal Electronic energy + Delta-G solvation = -29613.657015 eV Core-core repulsion = 25670.885000 eV Total energy + Delta-G solvation = -3942.772015 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -41.35798 -39.96610 -38.09740 -37.24965 -35.26527 -33.78100 -32.70493 -32.10499 -31.03167 -30.45988 -27.85816 -27.42039 -25.68126 -24.30937 -23.99746 -23.31303 -22.24614 -21.07382 -20.58650 -19.51917 -18.45824 -17.40201 -17.18205 -16.69682 -16.22600 -15.88725 -15.61327 -15.13602 -14.82488 -14.61459 -14.44729 -14.24294 -14.04311 -13.58547 -13.55803 -13.50024 -13.16164 -12.95193 -12.91673 -12.66323 -12.57438 -11.94196 -11.85323 -11.44787 -11.33734 -11.14243 -11.03206 -10.86672 -10.76230 -10.71372 -10.41143 -10.30939 -10.12946 -9.94298 -9.90979 -9.53878 -8.83632 -8.70664 -8.65872 -8.43366 -6.73438 -5.60119 -2.88145 0.49838 0.92304 2.74934 2.93018 2.96666 3.52903 3.53180 3.56189 3.58206 3.94726 4.36682 4.38710 4.58175 4.64660 4.72153 4.75428 4.81261 4.85523 5.01973 5.11095 5.19363 5.20114 5.23571 5.25862 5.38817 5.51416 5.56136 5.59743 5.63738 5.67953 5.70857 5.80243 5.83205 5.98906 6.00629 6.04427 6.19785 6.30227 6.45115 6.47226 6.64252 6.75159 7.04868 7.15538 7.26835 7.42549 7.55033 7.82195 8.35120 8.58922 9.69097 10.32083 10.67005 11.62768 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012895 B = 0.003257 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.828457 B = 8595.391000 C =10320.527676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.276 6.276 3 C 0.370 3.630 4 N -0.544 5.544 5 C 0.160 3.840 6 C -0.224 4.224 7 C -0.026 4.026 8 C -0.202 4.202 9 C 0.560 3.440 10 O -0.490 6.490 11 N -0.605 5.605 12 C 0.079 3.921 13 C -0.135 4.135 14 C -0.120 4.120 15 C -0.133 4.133 16 C 0.155 3.845 17 H 0.072 0.928 18 C -0.116 4.116 19 C 0.149 3.851 20 N -0.731 5.731 21 C -0.236 4.236 22 H 0.068 0.932 23 C -0.017 4.017 24 N -0.932 5.932 25 Si 0.906 3.094 26 H -0.292 1.292 27 H -0.287 1.287 28 H -0.287 1.287 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.101 0.899 32 H 0.163 0.837 33 H 0.143 0.857 34 H 0.159 0.841 35 H 0.071 0.929 36 H 0.102 0.898 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.083 0.917 42 H 0.067 0.933 43 H 0.069 0.931 44 H 0.092 0.908 45 H 0.012 0.988 46 H 0.014 0.986 47 H 0.386 0.614 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.452 28.294 -8.495 29.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.180 6.180 3 C 0.190 3.810 4 N -0.269 5.269 5 C 0.003 3.997 6 C -0.244 4.244 7 C -0.052 4.052 8 C -0.208 4.208 9 C 0.347 3.653 10 O -0.364 6.364 11 N -0.339 5.339 12 C -0.044 4.044 13 C -0.173 4.173 14 C -0.158 4.158 15 C -0.172 4.172 16 C 0.053 3.947 17 H 0.090 0.910 18 C -0.154 4.154 19 C 0.021 3.979 20 N -0.375 5.375 21 C -0.368 4.368 22 H 0.086 0.914 23 C -0.213 4.213 24 N -0.581 5.581 25 Si 0.737 3.263 26 H -0.218 1.218 27 H -0.214 1.214 28 H -0.214 1.214 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.120 0.880 32 H 0.180 0.820 33 H 0.161 0.839 34 H 0.176 0.824 35 H 0.089 0.911 36 H 0.120 0.880 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.101 0.899 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.110 0.890 45 H 0.030 0.970 46 H 0.032 0.968 47 H 0.220 0.780 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.388 27.195 -8.177 28.431 hybrid contribution 0.772 -0.580 0.034 0.966 sum -0.616 26.615 -8.142 27.840 Atomic orbital electron populations 1.22971 0.76997 1.03704 1.02101 1.86481 1.22855 1.23084 1.85582 1.19831 0.88059 0.85163 0.87919 1.67473 1.40369 0.98677 1.20332 1.22625 0.93071 0.93740 0.90271 1.21925 0.94805 0.99762 1.07925 1.22002 1.01241 0.90528 0.91399 1.20109 0.91863 0.95478 1.13382 1.17834 0.80566 0.87013 0.79870 1.90986 1.69832 1.33993 1.41621 1.48004 1.21589 1.11121 1.53209 1.22552 0.99957 0.88465 0.93417 1.21924 1.00578 0.98802 0.95997 1.21543 0.98305 0.94915 1.01004 1.22067 1.01617 0.98157 0.95321 1.21322 0.94381 0.83148 0.95887 0.91004 1.22248 0.97920 0.91904 1.03344 1.20789 0.94189 0.87939 0.95007 1.42361 1.26361 1.04647 1.64126 1.19201 1.03992 0.85723 1.27861 0.91413 1.24745 0.97398 0.98016 1.01094 1.69680 1.16411 1.31893 1.40128 0.86280 0.77865 0.84798 0.77326 1.21753 1.21403 1.21386 0.92142 0.92362 0.88021 0.82016 0.83933 0.82378 0.91063 0.88009 0.90957 0.91542 0.91812 0.91769 0.89882 0.91430 0.91279 0.89006 0.97048 0.96777 0.78042 0.93605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.38 101.05 1.05 1.48 16 2 O -0.28 -4.33 9.13 -35.54 -0.32 -4.66 16 3 C 0.37 5.15 7.48 -16.61 -0.12 5.03 16 4 N -0.54 -6.29 9.21 -12.98 -0.12 -6.40 16 5 C 0.16 1.27 11.17 -17.49 -0.20 1.07 16 6 C -0.22 -1.49 10.09 -39.50 -0.40 -1.88 16 7 C -0.03 -0.23 7.56 -38.89 -0.29 -0.52 16 8 C -0.20 -2.61 5.53 -104.69 -0.58 -3.19 16 9 C 0.56 8.81 7.15 -12.48 -0.09 8.72 16 10 O -0.49 -9.94 11.48 -12.29 -0.14 -10.09 16 11 N -0.60 -7.90 2.97 -166.44 -0.49 -8.39 16 12 C 0.08 0.67 5.06 -3.72 -0.02 0.65 16 13 C -0.13 -1.09 6.08 -26.61 -0.16 -1.25 16 14 C -0.12 -1.12 5.88 -26.69 -0.16 -1.28 16 15 C -0.13 -1.70 4.80 -26.61 -0.13 -1.83 16 16 C 0.16 2.28 3.04 -67.59 -0.21 2.07 16 17 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 18 C -0.12 -2.29 3.29 -26.73 -0.09 -2.38 16 19 C 0.15 3.33 5.72 -4.05 -0.02 3.31 16 20 N -0.73 -20.64 5.60 -59.91 -0.34 -20.97 16 21 C -0.24 -7.12 9.99 -15.06 -0.15 -7.27 16 22 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 23 C -0.02 -0.51 5.50 -17.43 -0.10 -0.61 16 24 N -0.93 -30.16 13.06 55.49 0.72 -29.43 16 25 Si 0.91 23.56 29.55 -169.99 -5.02 18.54 16 26 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 27 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 28 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 29 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 30 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 31 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.16 0.72 8.06 -52.49 -0.42 0.29 16 33 H 0.14 0.46 8.06 -52.48 -0.42 0.04 16 34 H 0.16 0.96 5.53 -52.49 -0.29 0.67 16 35 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 36 H 0.10 0.73 3.48 -52.60 -0.18 0.54 16 37 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.08 1.10 6.86 -51.93 -0.36 0.74 16 42 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.07 1.50 7.18 -51.93 -0.37 1.13 16 44 H 0.09 2.04 6.29 -51.93 -0.33 1.71 16 45 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 46 H 0.01 0.31 6.83 -51.93 -0.35 -0.04 16 47 H 0.39 11.69 7.67 -40.82 -0.31 11.38 16 48 H 0.25 7.91 8.31 -40.82 -0.34 7.57 16 LS Contribution 376.62 15.07 5.68 5.68 Total: -1.00 -37.60 376.62 -8.93 -46.53 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -7.23 Total: 7.08 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: -1.66 Total: 2.12 kcal Atomic # 7 Polarization: -64.98 SS G_CDS: -0.23 Total: -65.20 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: -0.47 Total: -14.74 kcal Atomic # 14 Polarization: 23.56 SS G_CDS: -5.02 Total: 18.54 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -37.60 -8.93 -46.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496415211.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.918 kcal (2) G-P(sol) polarization free energy of solvation -37.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds