Wall clock time and date at job start Tue Mar 31 2020 17:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35429 * 117.00117 * 2 1 4 4 N 1.32241 * 119.79994 * 0.02732 * 3 2 1 5 5 C 1.31876 * 121.80076 * 179.97438 * 4 3 2 6 6 C 1.38354 * 121.18662 * 359.97438 * 5 4 3 7 7 C 1.38338 * 119.46057 * 359.74398 * 6 5 4 8 8 C 1.39989 * 118.34466 * 0.49543 * 7 6 5 9 9 C 1.47524 * 120.59628 * 179.78070 * 8 7 6 10 10 O 1.21596 * 119.99902 * 144.66642 * 9 8 7 11 11 N 1.34775 * 120.00041 * 324.67273 * 9 8 7 12 12 C 1.46924 * 120.63128 * 4.42909 * 11 9 8 13 13 C 1.53184 * 108.78084 * 233.61431 * 12 11 9 14 14 C 1.53050 * 109.31237 * 305.36894 * 13 12 11 15 15 C 1.53038 * 109.53843 * 61.36417 * 14 13 12 16 16 C 1.46928 * 120.63013 * 184.43947 * 11 9 8 17 17 H 1.08995 * 109.70347 * 246.24622 * 16 11 9 18 18 C 1.53005 * 109.58726 * 6.60049 * 16 11 9 19 19 C 1.52992 * 109.46998 * 177.83305 * 18 16 11 20 20 N 1.46501 * 109.47050 * 174.89650 * 19 18 16 21 21 C 1.36945 * 120.00066 * 179.97438 * 20 19 18 22 22 H 1.07993 * 119.99550 * 0.02562 * 21 20 19 23 23 C 1.38810 * 119.99843 * 179.97438 * 21 20 19 24 24 N 1.31619 * 119.99888 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00017 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47383 * 180.02562 * 25 23 21 27 27 H 1.48502 * 109.47122 * 300.00848 * 25 23 21 28 28 H 1.48501 * 109.46855 * 60.00012 * 25 23 21 29 29 H 1.09007 * 109.46988 * 299.99786 * 1 2 3 30 30 H 1.08999 * 109.47204 * 59.99455 * 1 2 3 31 31 H 1.09001 * 109.47597 * 179.97438 * 1 2 3 32 32 H 1.07999 * 119.40443 * 179.97438 * 5 4 3 33 33 H 1.08006 * 120.27231 * 180.02562 * 6 5 4 34 34 H 1.07999 * 120.82972 * 180.26163 * 7 6 5 35 35 H 1.09010 * 109.58279 * 113.82415 * 12 11 9 36 36 H 1.08999 * 109.70568 * 353.47606 * 12 11 9 37 37 H 1.09003 * 109.49907 * 185.41617 * 13 12 11 38 38 H 1.08994 * 109.49748 * 65.31676 * 13 12 11 39 39 H 1.09000 * 109.45632 * 301.34477 * 14 13 12 40 40 H 1.09004 * 109.45592 * 181.38732 * 14 13 12 41 41 H 1.08994 * 109.50036 * 178.68731 * 15 14 13 42 42 H 1.09001 * 109.49733 * 58.58609 * 15 14 13 43 43 H 1.08996 * 109.46925 * 57.82933 * 18 16 11 44 44 H 1.09006 * 109.46626 * 297.82898 * 18 16 11 45 45 H 1.08997 * 109.48052 * 54.89231 * 19 18 16 46 46 H 1.09003 * 109.46917 * 294.88930 * 19 18 16 47 47 H 0.96999 * 119.99876 * 359.97438 * 20 19 18 48 48 H 0.97001 * 119.99675 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0438 1.2067 0.0000 4 7 1.3197 2.3132 0.0005 5 6 1.8771 3.5084 0.0011 6 6 3.2525 3.6575 0.0016 7 6 4.0588 2.5334 0.0070 8 6 3.4449 1.2752 0.0010 9 6 4.2570 0.0436 0.0015 10 8 3.8717 -0.9384 0.6063 11 7 5.4259 0.0068 -0.6684 12 6 5.9520 1.2126 -1.3226 13 6 6.2434 0.8894 -2.7913 14 6 7.1734 -0.3238 -2.8678 15 6 6.4869 -1.5356 -2.2336 16 6 6.1982 -1.2398 -0.7584 17 1 7.1378 -1.1299 -0.2171 18 6 5.3893 -2.3892 -0.1536 19 6 6.1730 -3.6952 -0.2974 20 7 5.4557 -4.7731 0.3882 21 6 5.9698 -6.0424 0.3937 22 1 6.9042 -6.2486 -0.1069 23 6 5.2904 -7.0635 1.0437 24 7 4.1519 -6.8119 1.6543 25 14 5.9920 -8.7947 1.0520 26 1 5.0828 -9.6937 1.8071 27 1 6.1225 -9.2826 -0.3445 28 1 7.3285 -8.7840 1.6994 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.2484 4.3866 0.0011 33 1 3.6933 4.6435 0.0024 34 1 5.1349 2.6241 0.0117 35 1 6.8716 1.5251 -0.8277 36 1 5.2152 2.0137 -1.2640 37 1 6.7236 1.7462 -3.2641 38 1 5.3096 0.6650 -3.3067 39 1 8.0971 -0.1075 -2.3311 40 1 7.4021 -0.5407 -3.9112 41 1 7.1402 -2.4048 -2.3092 42 1 5.5507 -1.7372 -2.7542 43 1 4.4369 -2.4774 -0.6762 44 1 5.2072 -2.1890 0.9023 45 1 7.1614 -3.5768 0.1466 46 1 6.2765 -3.9424 -1.3540 47 1 4.6166 -4.5877 0.8381 48 1 3.6769 -7.5256 2.1082 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496415211.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:12 Heat of formation + Delta-G solvation = -15.440135 kcal Electronic energy + Delta-G solvation = -29614.863695 eV Core-core repulsion = 25670.885000 eV Total energy + Delta-G solvation = -3943.978696 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.27447 -40.96749 -38.99795 -38.35864 -37.03020 -35.10571 -34.02627 -33.19220 -32.26785 -31.73594 -29.34872 -28.31782 -26.92636 -25.63235 -25.09198 -24.35991 -23.67345 -22.14691 -21.93256 -20.52867 -19.33129 -19.20391 -18.18680 -17.95639 -17.18958 -17.07102 -16.62078 -16.37824 -16.17616 -15.67816 -15.59903 -15.40487 -15.24878 -15.04417 -14.80295 -14.47260 -14.35745 -14.27246 -14.12205 -13.86050 -13.50450 -13.23125 -12.90044 -12.80755 -12.73499 -12.59733 -12.37088 -12.25272 -12.16842 -11.93157 -11.87460 -11.77122 -11.56110 -11.42726 -10.93726 -10.87394 -10.75984 -9.99861 -9.66513 -9.44817 -9.02822 -7.95194 -5.26717 -0.27197 0.20848 1.43289 1.49296 1.55458 1.70964 1.97051 2.08851 2.54832 2.73051 3.19187 3.36471 3.48560 3.74115 3.81885 3.85143 3.93450 3.96681 4.10425 4.12077 4.21203 4.26945 4.31669 4.33498 4.40909 4.48325 4.49630 4.57312 4.64427 4.70885 4.71878 4.78555 4.87098 4.92009 4.97004 5.06110 5.10049 5.16056 5.23986 5.37467 5.39936 5.43075 5.48917 5.49740 5.70947 6.18242 6.25154 6.42342 6.75555 7.23098 7.29348 8.06313 8.31289 9.28950 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012895 B = 0.003257 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.828457 B = 8595.391000 C =10320.527676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.319 6.319 3 C 0.339 3.661 4 N -0.560 5.560 5 C 0.156 3.844 6 C -0.199 4.199 7 C -0.020 4.020 8 C -0.230 4.230 9 C 0.551 3.449 10 O -0.556 6.556 11 N -0.601 5.601 12 C 0.071 3.929 13 C -0.131 4.131 14 C -0.114 4.114 15 C -0.130 4.130 16 C 0.159 3.841 17 H 0.087 0.913 18 C -0.093 4.093 19 C 0.150 3.850 20 N -0.750 5.750 21 C -0.250 4.250 22 H 0.080 0.920 23 C -0.083 4.083 24 N -0.975 5.975 25 Si 0.984 3.016 26 H -0.294 1.294 27 H -0.274 1.274 28 H -0.273 1.273 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.102 0.898 32 H 0.202 0.798 33 H 0.193 0.807 34 H 0.189 0.811 35 H 0.102 0.898 36 H 0.120 0.880 37 H 0.110 0.890 38 H 0.048 0.952 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.044 0.956 43 H 0.035 0.965 44 H 0.060 0.940 45 H 0.022 0.978 46 H 0.023 0.977 47 H 0.368 0.632 48 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.163 31.963 -9.955 33.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.225 6.225 3 C 0.160 3.840 4 N -0.284 5.284 5 C -0.001 4.001 6 C -0.218 4.218 7 C -0.045 4.045 8 C -0.236 4.236 9 C 0.340 3.660 10 O -0.435 6.435 11 N -0.334 5.334 12 C -0.049 4.049 13 C -0.169 4.169 14 C -0.152 4.152 15 C -0.168 4.168 16 C 0.056 3.944 17 H 0.105 0.895 18 C -0.131 4.131 19 C 0.023 3.977 20 N -0.392 5.392 21 C -0.382 4.382 22 H 0.098 0.902 23 C -0.275 4.275 24 N -0.625 5.625 25 Si 0.812 3.188 26 H -0.220 1.220 27 H -0.200 1.200 28 H -0.199 1.199 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.120 0.880 32 H 0.219 0.781 33 H 0.210 0.790 34 H 0.206 0.794 35 H 0.120 0.880 36 H 0.138 0.862 37 H 0.128 0.872 38 H 0.067 0.933 39 H 0.100 0.900 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.063 0.937 43 H 0.054 0.946 44 H 0.079 0.921 45 H 0.040 0.960 46 H 0.041 0.959 47 H 0.199 0.801 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 1.291 30.936 -9.697 32.446 hybrid contribution -0.058 -1.527 0.461 1.596 sum 1.233 29.409 -9.236 30.850 Atomic orbital electron populations 1.23038 0.75933 1.03994 1.02736 1.86420 1.24362 1.25281 1.86398 1.20082 0.88700 0.85266 0.89940 1.67499 1.40770 0.99254 1.20902 1.23479 0.94754 0.93448 0.88383 1.22458 0.93920 1.01092 1.04329 1.22378 1.02919 0.89078 0.90096 1.20058 0.91319 0.95904 1.16296 1.18428 0.81075 0.87415 0.79100 1.90952 1.71366 1.36602 1.44613 1.48099 1.20696 1.11960 1.52603 1.22982 1.01539 0.86758 0.93656 1.21937 0.99826 0.99540 0.95588 1.21536 0.98734 0.93434 1.01480 1.22013 1.00864 1.00154 0.93807 1.21161 0.93850 0.82346 0.97026 0.89471 1.21892 0.96801 0.92938 1.01441 1.20962 0.94263 0.87782 0.94660 1.42665 1.26171 1.05756 1.64605 1.19696 1.04334 0.86642 1.27511 0.90213 1.25763 0.97874 1.02810 1.01016 1.69891 1.18126 1.33146 1.41355 0.85061 0.77285 0.78716 0.77776 1.22017 1.20016 1.19922 0.91796 0.91272 0.87997 0.78134 0.79006 0.79400 0.87965 0.86224 0.87166 0.93264 0.90013 0.90573 0.90545 0.93696 0.94640 0.92134 0.95991 0.95891 0.80077 0.94007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.97 10.38 113.37 1.18 2.15 16 2 O -0.32 -11.15 9.13 -70.45 -0.64 -11.79 16 3 C 0.34 9.90 7.48 85.13 0.64 10.54 16 4 N -0.56 -12.63 9.21 -307.99 -2.84 -15.46 16 5 C 0.16 1.95 11.17 84.71 0.95 2.90 16 6 C -0.20 -1.67 10.09 22.32 0.23 -1.45 16 7 C -0.02 -0.28 7.56 22.72 0.17 -0.10 16 8 C -0.23 -6.00 5.53 -19.91 -0.11 -6.11 16 9 C 0.55 18.39 7.15 86.69 0.62 19.01 16 10 O -0.56 -25.13 11.48 12.78 0.15 -24.98 16 11 N -0.60 -15.61 2.97 -798.75 -2.37 -17.99 16 12 C 0.07 0.97 5.06 86.36 0.44 1.41 16 13 C -0.13 -1.66 6.08 30.67 0.19 -1.47 16 14 C -0.11 -1.80 5.88 30.62 0.18 -1.62 16 15 C -0.13 -3.29 4.80 30.67 0.15 -3.15 16 16 C 0.16 4.76 3.04 44.98 0.14 4.90 16 17 H 0.09 2.35 8.14 -2.39 -0.02 2.34 16 18 C -0.09 -3.95 3.29 30.59 0.10 -3.85 16 19 C 0.15 7.04 5.72 86.38 0.49 7.53 16 20 N -0.75 -44.63 5.60 -343.46 -1.92 -46.56 16 21 C -0.25 -15.48 9.99 84.03 0.84 -14.64 16 22 H 0.08 4.62 7.83 -2.91 -0.02 4.60 16 23 C -0.08 -5.20 5.50 84.86 0.47 -4.73 16 24 N -0.97 -65.63 13.06 21.65 0.28 -65.35 16 25 Si 0.98 49.29 29.55 68.60 2.03 51.32 16 26 H -0.29 -14.72 7.11 99.48 0.71 -14.01 16 27 H -0.27 -13.07 7.11 99.48 0.71 -12.36 16 28 H -0.27 -13.00 7.11 99.48 0.71 -12.29 16 29 H 0.06 1.52 8.10 -2.38 -0.02 1.50 16 30 H 0.07 1.54 8.10 -2.39 -0.02 1.52 16 31 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 32 H 0.20 0.82 8.06 -2.91 -0.02 0.80 16 33 H 0.19 -0.19 8.06 -2.91 -0.02 -0.22 16 34 H 0.19 1.37 5.53 -2.91 -0.02 1.36 16 35 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 36 H 0.12 1.22 3.48 -3.02 -0.01 1.21 16 37 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 41 H 0.08 2.01 6.86 -2.39 -0.02 1.99 16 42 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.03 1.71 7.18 -2.39 -0.02 1.70 16 44 H 0.06 2.97 6.29 -2.38 -0.01 2.95 16 45 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 46 H 0.02 1.05 6.83 -2.39 -0.02 1.03 16 47 H 0.37 24.05 7.67 -92.71 -0.71 23.34 16 48 H 0.25 16.24 8.31 -92.71 -0.77 15.47 16 Total: -1.00 -91.11 376.62 1.60 -89.51 By element: Atomic # 1 Polarization: 29.72 SS G_CDS: 0.26 Total: 29.99 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: 6.65 Total: 11.31 kcal Atomic # 7 Polarization: -138.50 SS G_CDS: -6.85 Total: -145.35 kcal Atomic # 8 Polarization: -36.28 SS G_CDS: -0.50 Total: -36.78 kcal Atomic # 14 Polarization: 49.29 SS G_CDS: 2.03 Total: 51.32 kcal Total: -91.11 1.60 -89.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496415211.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.073 kcal (2) G-P(sol) polarization free energy of solvation -91.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds