Wall clock time and date at job start Tue Mar 31 2020 17:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35425 * 116.99959 * 2 1 4 4 N 1.32234 * 119.80102 * 0.02562 * 3 2 1 5 5 C 1.31887 * 121.80375 * 180.02562 * 4 3 2 6 6 C 1.38353 * 121.18176 * 359.97438 * 5 4 3 7 7 C 1.38334 * 119.45875 * 359.76322 * 6 5 4 8 8 C 1.39989 * 118.35209 * 0.47816 * 7 6 5 9 9 C 1.47526 * 120.59797 * 179.80095 * 8 7 6 10 10 O 1.21586 * 119.99579 * 218.51960 * 9 8 7 11 11 N 1.34774 * 120.00027 * 38.52473 * 9 8 7 12 12 C 1.46960 * 120.65430 * 5.33089 * 11 9 8 13 13 C 1.53196 * 108.88839 * 126.46238 * 12 11 9 14 14 C 1.53039 * 109.31088 * 54.55570 * 13 12 11 15 15 C 1.53042 * 109.54050 * 298.63667 * 14 13 12 16 16 C 1.46921 * 120.63050 * 185.14743 * 11 9 8 17 17 H 1.08997 * 109.58652 * 113.67764 * 16 11 9 18 18 C 1.53007 * 109.58765 * 353.39772 * 16 11 9 19 19 C 1.52995 * 109.47376 * 180.39607 * 18 16 11 20 20 N 1.46500 * 109.47103 * 185.23496 * 19 18 16 21 21 C 1.36940 * 119.99731 * 179.97438 * 20 19 18 22 22 H 1.07998 * 119.99889 * 0.02562 * 21 20 19 23 23 C 1.38816 * 119.99614 * 180.02562 * 21 20 19 24 24 N 1.31626 * 119.99640 * 179.97438 * 23 21 20 25 25 Si 1.86797 * 120.00383 * 0.02562 * 23 21 20 26 26 H 1.48496 * 109.46974 * 89.99492 * 25 23 21 27 27 H 1.48494 * 109.47093 * 210.00000 * 25 23 21 28 28 H 1.48505 * 109.46653 * 329.99838 * 25 23 21 29 29 H 1.08999 * 109.47490 * 59.99436 * 1 2 3 30 30 H 1.09000 * 109.47310 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46962 * 299.99462 * 1 2 3 32 32 H 1.08003 * 119.40599 * 180.02562 * 5 4 3 33 33 H 1.08004 * 120.26585 * 180.02562 * 6 5 4 34 34 H 1.08001 * 120.82307 * 180.25434 * 7 6 5 35 35 H 1.09005 * 109.59489 * 6.60274 * 12 11 9 36 36 H 1.08991 * 109.46654 * 246.24641 * 12 11 9 37 37 H 1.09002 * 109.49753 * 294.60427 * 13 12 11 38 38 H 1.09000 * 109.52375 * 174.52198 * 13 12 11 39 39 H 1.09000 * 109.46264 * 178.61131 * 14 13 12 40 40 H 1.08997 * 109.45832 * 58.65661 * 14 13 12 41 41 H 1.09003 * 109.49233 * 301.41447 * 15 14 13 42 42 H 1.08999 * 109.50084 * 181.31734 * 15 14 13 43 43 H 1.09000 * 109.47016 * 60.39200 * 18 16 11 44 44 H 1.09004 * 109.46752 * 300.39929 * 18 16 11 45 45 H 1.08998 * 109.47090 * 305.23836 * 19 18 16 46 46 H 1.09006 * 109.47160 * 65.24068 * 19 18 16 47 47 H 0.96993 * 119.99989 * 0.02562 * 20 19 18 48 48 H 0.97000 * 119.99649 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0438 1.2067 0.0000 4 7 1.3198 2.3132 0.0005 5 6 1.8771 3.5085 0.0000 6 6 3.2526 3.6575 -0.0005 7 6 4.0587 2.5334 0.0044 8 6 3.4450 1.2752 -0.0004 9 6 4.2570 0.0436 0.0001 10 8 3.9063 -0.9161 -0.6590 11 7 5.3876 -0.0179 0.7312 12 6 5.7643 1.0879 1.6229 13 6 6.0099 0.5299 3.0283 14 6 7.0434 -0.5963 2.9522 15 6 6.5054 -1.7261 2.0711 16 6 6.2654 -1.1936 0.6550 17 1 7.2168 -0.9107 0.2047 18 6 5.5983 -2.2775 -0.1943 19 6 6.5101 -3.5042 -0.2638 20 7 5.9304 -4.4924 -1.1768 21 6 6.5753 -5.6797 -1.3997 22 1 7.5110 -5.8877 -0.9020 23 6 6.0263 -6.6159 -2.2652 24 7 6.6465 -7.7569 -2.4798 25 14 4.4083 -6.2558 -3.1264 26 1 4.6765 -5.5820 -4.4222 27 1 3.6838 -7.5288 -3.3710 28 1 3.5784 -5.3704 -2.2704 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.2484 4.3867 0.0009 33 1 3.6932 4.6436 -0.0005 34 1 5.1349 2.6241 0.0082 35 1 4.9584 1.8211 1.6566 36 1 6.6746 1.5592 1.2526 37 1 5.0761 0.1399 3.4333 38 1 6.3837 1.3236 3.6752 39 1 7.2384 -0.9786 3.9542 40 1 7.9690 -0.2114 2.5242 41 1 5.5669 -2.0948 2.4852 42 1 7.2320 -2.5378 2.0363 43 1 5.4256 -1.8957 -1.2005 44 1 4.6462 -2.5575 0.2564 45 1 7.4933 -3.2059 -0.6277 46 1 6.6077 -3.9411 0.7301 47 1 5.0903 -4.3054 -1.6239 48 1 6.2626 -8.4112 -3.0843 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496415214.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:17 Heat of formation + Delta-G solvation = 2.498493 kcal Electronic energy + Delta-G solvation = -29673.836274 eV Core-core repulsion = 25730.635455 eV Total energy + Delta-G solvation = -3943.200818 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.39884 -40.06935 -38.17944 -37.33760 -35.41258 -33.78602 -32.77304 -32.20822 -31.14181 -30.76755 -28.15898 -27.53266 -25.78266 -24.31714 -24.03742 -23.31991 -22.05557 -21.12139 -20.71816 -19.58668 -18.56084 -17.61285 -17.37054 -16.93305 -16.34613 -15.94869 -15.58455 -15.31423 -14.82447 -14.61844 -14.48622 -14.34819 -14.20394 -13.71874 -13.65490 -13.50189 -13.30072 -13.18580 -12.84001 -12.75028 -12.61046 -12.17711 -11.98783 -11.55956 -11.49053 -11.36757 -11.20627 -11.01778 -10.83525 -10.80803 -10.41394 -10.31184 -10.19031 -10.09636 -9.99231 -9.46568 -8.93009 -8.81321 -8.73876 -8.50951 -7.06306 -5.64688 -2.98017 0.42950 0.85965 2.64337 2.82675 2.86247 3.43722 3.51312 3.57060 3.59481 3.86895 4.29212 4.35012 4.54065 4.57560 4.70009 4.73420 4.74159 4.80137 4.94323 5.02846 5.07562 5.11738 5.13726 5.18339 5.29289 5.42705 5.46535 5.49496 5.57335 5.62398 5.65216 5.72443 5.77067 5.89492 5.93107 5.98018 6.06496 6.15327 6.21147 6.35140 6.48765 6.63593 6.93678 7.02253 7.10995 7.32109 7.45205 8.13407 8.22482 8.55703 9.36585 10.10065 10.31758 11.54048 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011611 B = 0.003665 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2410.862289 B = 7638.881547 C = 9443.841058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.280 6.280 3 C 0.368 3.632 4 N -0.544 5.544 5 C 0.160 3.840 6 C -0.222 4.222 7 C -0.014 4.014 8 C -0.203 4.203 9 C 0.563 3.437 10 O -0.496 6.496 11 N -0.605 5.605 12 C 0.098 3.902 13 C -0.135 4.135 14 C -0.120 4.120 15 C -0.134 4.134 16 C 0.155 3.845 17 H 0.074 0.926 18 C -0.118 4.118 19 C 0.152 3.848 20 N -0.755 5.755 21 C -0.239 4.239 22 H 0.089 0.911 23 C 0.001 3.999 24 N -0.938 5.938 25 Si 0.883 3.117 26 H -0.285 1.285 27 H -0.292 1.292 28 H -0.274 1.274 29 H 0.060 0.940 30 H 0.100 0.900 31 H 0.059 0.941 32 H 0.163 0.837 33 H 0.143 0.857 34 H 0.149 0.851 35 H 0.087 0.913 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.074 0.926 45 H 0.020 0.980 46 H 0.023 0.977 47 H 0.363 0.637 48 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.777 29.950 12.090 33.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.185 6.185 3 C 0.188 3.812 4 N -0.268 5.268 5 C 0.003 3.997 6 C -0.242 4.242 7 C -0.040 4.040 8 C -0.209 4.209 9 C 0.349 3.651 10 O -0.370 6.370 11 N -0.340 5.340 12 C -0.025 4.025 13 C -0.173 4.173 14 C -0.158 4.158 15 C -0.172 4.172 16 C 0.052 3.948 17 H 0.092 0.908 18 C -0.155 4.155 19 C 0.024 3.976 20 N -0.401 5.401 21 C -0.369 4.369 22 H 0.107 0.893 23 C -0.194 4.194 24 N -0.587 5.587 25 Si 0.713 3.287 26 H -0.211 1.211 27 H -0.218 1.218 28 H -0.200 1.200 29 H 0.079 0.921 30 H 0.118 0.882 31 H 0.077 0.923 32 H 0.181 0.819 33 H 0.161 0.839 34 H 0.166 0.834 35 H 0.105 0.895 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.103 0.897 43 H 0.102 0.898 44 H 0.093 0.907 45 H 0.038 0.962 46 H 0.041 0.959 47 H 0.196 0.804 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.618 28.842 11.740 32.058 hybrid contribution -0.473 0.479 -0.580 0.889 sum -8.090 29.322 11.160 32.400 Atomic orbital electron populations 1.22960 0.76988 1.03565 1.02235 1.86443 1.22887 1.23316 1.85806 1.19814 0.88044 0.85122 0.88182 1.67463 1.40371 0.98682 1.20318 1.22636 0.93082 0.93715 0.90218 1.21925 0.94766 0.99821 1.07737 1.21775 1.01015 0.90323 0.90885 1.20089 0.91772 0.95524 1.13515 1.17840 0.80343 0.86652 0.80221 1.90966 1.68796 1.35383 1.41890 1.48034 1.23084 1.19639 1.43220 1.22083 1.00903 0.89405 0.90109 1.21924 1.00315 0.98939 0.96139 1.21536 0.98138 0.95808 1.00269 1.22073 1.02424 0.98189 0.94559 1.21319 0.92585 0.84719 0.96133 0.90776 1.22285 0.98728 0.93646 1.00883 1.20784 0.94778 0.88730 0.93317 1.42714 1.26001 1.17681 1.53658 1.19090 1.04570 0.91621 1.21578 0.89339 1.24651 0.98474 0.96269 0.99981 1.69715 1.39977 1.08175 1.40851 0.86544 0.85049 0.76985 0.80127 1.21130 1.21850 1.19988 0.92097 0.88181 0.92277 0.81949 0.83876 0.83357 0.89481 0.91138 0.91534 0.90852 0.91644 0.91725 0.91368 0.89729 0.89817 0.90692 0.96175 0.95871 0.80433 0.93224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 10.38 101.05 1.05 1.44 16 2 O -0.28 -4.08 9.24 -34.08 -0.31 -4.40 16 3 C 0.37 4.81 7.48 -16.61 -0.12 4.68 16 4 N -0.54 -5.90 9.21 -12.98 -0.12 -6.02 16 5 C 0.16 1.18 11.17 -17.49 -0.20 0.99 16 6 C -0.22 -1.38 10.09 -39.50 -0.40 -1.78 16 7 C -0.01 -0.12 7.48 -38.89 -0.29 -0.41 16 8 C -0.20 -2.47 5.21 -104.69 -0.55 -3.01 16 9 C 0.56 8.34 7.11 -12.47 -0.09 8.25 16 10 O -0.50 -9.51 11.51 -10.82 -0.12 -9.63 16 11 N -0.61 -7.41 2.98 -166.42 -0.50 -7.91 16 12 C 0.10 0.79 4.88 -3.69 -0.02 0.77 16 13 C -0.13 -1.04 6.08 -26.61 -0.16 -1.20 16 14 C -0.12 -1.06 5.88 -26.69 -0.16 -1.22 16 15 C -0.13 -1.62 4.86 -26.61 -0.13 -1.75 16 16 C 0.15 2.13 3.01 -67.60 -0.20 1.93 16 17 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 18 C -0.12 -2.17 3.26 -26.73 -0.09 -2.25 16 19 C 0.15 3.23 5.76 -4.04 -0.02 3.20 16 20 N -0.76 -20.03 5.41 -59.91 -0.32 -20.35 16 21 C -0.24 -7.26 10.47 -15.06 -0.16 -7.41 16 22 H 0.09 2.83 8.06 -52.49 -0.42 2.40 16 23 C 0.00 0.04 5.50 -17.43 -0.10 -0.05 16 24 N -0.94 -30.93 13.97 55.49 0.78 -30.16 16 25 Si 0.88 23.99 27.74 -169.99 -4.71 19.28 16 26 H -0.28 -7.67 7.11 56.52 0.40 -7.27 16 27 H -0.29 -7.89 7.11 56.52 0.40 -7.49 16 28 H -0.27 -7.25 6.52 56.52 0.37 -6.88 16 29 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 30 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.06 0.54 8.10 -51.92 -0.42 0.12 16 32 H 0.16 0.64 8.06 -52.48 -0.42 0.22 16 33 H 0.14 0.43 8.06 -52.48 -0.42 0.00 16 34 H 0.15 0.87 6.46 -52.49 -0.34 0.53 16 35 H 0.09 0.61 4.61 -51.93 -0.24 0.37 16 36 H 0.07 0.44 8.11 -51.93 -0.42 0.02 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.08 1.06 6.89 -51.93 -0.36 0.71 16 43 H 0.08 1.71 6.47 -51.93 -0.34 1.38 16 44 H 0.07 1.53 7.01 -51.93 -0.36 1.16 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.02 0.49 6.87 -51.93 -0.36 0.13 16 47 H 0.36 9.70 5.53 -40.82 -0.23 9.48 16 48 H 0.26 8.08 8.31 -40.82 -0.34 7.74 16 LS Contribution 375.16 15.07 5.65 5.65 Total: -1.00 -38.08 375.16 -8.59 -46.67 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -7.30 Total: 4.68 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: -1.63 Total: 2.18 kcal Atomic # 7 Polarization: -64.27 SS G_CDS: -0.16 Total: -64.43 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: -0.44 Total: -14.03 kcal Atomic # 14 Polarization: 23.99 SS G_CDS: -4.71 Total: 19.28 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -38.08 -8.59 -46.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496415214.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.173 kcal (2) G-P(sol) polarization free energy of solvation -38.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds