Wall clock time and date at job start Tue Mar 31 2020 17:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35425 * 116.99959 * 2 1 4 4 N 1.32234 * 119.80102 * 0.02562 * 3 2 1 5 5 C 1.31887 * 121.80375 * 180.02562 * 4 3 2 6 6 C 1.38353 * 121.18176 * 359.97438 * 5 4 3 7 7 C 1.38334 * 119.45875 * 359.76322 * 6 5 4 8 8 C 1.39989 * 118.35209 * 0.47816 * 7 6 5 9 9 C 1.47526 * 120.59797 * 179.80095 * 8 7 6 10 10 O 1.21586 * 119.99579 * 218.51960 * 9 8 7 11 11 N 1.34774 * 120.00027 * 38.52473 * 9 8 7 12 12 C 1.46960 * 120.65430 * 5.33089 * 11 9 8 13 13 C 1.53196 * 108.88839 * 126.46238 * 12 11 9 14 14 C 1.53039 * 109.31088 * 54.55570 * 13 12 11 15 15 C 1.53042 * 109.54050 * 298.63667 * 14 13 12 16 16 C 1.46921 * 120.63050 * 185.14743 * 11 9 8 17 17 H 1.08997 * 109.58652 * 113.67764 * 16 11 9 18 18 C 1.53007 * 109.58765 * 353.39772 * 16 11 9 19 19 C 1.52995 * 109.47376 * 180.39607 * 18 16 11 20 20 N 1.46500 * 109.47103 * 185.23496 * 19 18 16 21 21 C 1.36940 * 119.99731 * 179.97438 * 20 19 18 22 22 H 1.07998 * 119.99889 * 0.02562 * 21 20 19 23 23 C 1.38816 * 119.99614 * 180.02562 * 21 20 19 24 24 N 1.31626 * 119.99640 * 179.97438 * 23 21 20 25 25 Si 1.86797 * 120.00383 * 0.02562 * 23 21 20 26 26 H 1.48496 * 109.46974 * 89.99492 * 25 23 21 27 27 H 1.48494 * 109.47093 * 210.00000 * 25 23 21 28 28 H 1.48505 * 109.46653 * 329.99838 * 25 23 21 29 29 H 1.08999 * 109.47490 * 59.99436 * 1 2 3 30 30 H 1.09000 * 109.47310 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46962 * 299.99462 * 1 2 3 32 32 H 1.08003 * 119.40599 * 180.02562 * 5 4 3 33 33 H 1.08004 * 120.26585 * 180.02562 * 6 5 4 34 34 H 1.08001 * 120.82307 * 180.25434 * 7 6 5 35 35 H 1.09005 * 109.59489 * 6.60274 * 12 11 9 36 36 H 1.08991 * 109.46654 * 246.24641 * 12 11 9 37 37 H 1.09002 * 109.49753 * 294.60427 * 13 12 11 38 38 H 1.09000 * 109.52375 * 174.52198 * 13 12 11 39 39 H 1.09000 * 109.46264 * 178.61131 * 14 13 12 40 40 H 1.08997 * 109.45832 * 58.65661 * 14 13 12 41 41 H 1.09003 * 109.49233 * 301.41447 * 15 14 13 42 42 H 1.08999 * 109.50084 * 181.31734 * 15 14 13 43 43 H 1.09000 * 109.47016 * 60.39200 * 18 16 11 44 44 H 1.09004 * 109.46752 * 300.39929 * 18 16 11 45 45 H 1.08998 * 109.47090 * 305.23836 * 19 18 16 46 46 H 1.09006 * 109.47160 * 65.24068 * 19 18 16 47 47 H 0.96993 * 119.99989 * 0.02562 * 20 19 18 48 48 H 0.97000 * 119.99649 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0438 1.2067 0.0000 4 7 1.3198 2.3132 0.0005 5 6 1.8771 3.5085 0.0000 6 6 3.2526 3.6575 -0.0005 7 6 4.0587 2.5334 0.0044 8 6 3.4450 1.2752 -0.0004 9 6 4.2570 0.0436 0.0001 10 8 3.9063 -0.9161 -0.6590 11 7 5.3876 -0.0179 0.7312 12 6 5.7643 1.0879 1.6229 13 6 6.0099 0.5299 3.0283 14 6 7.0434 -0.5963 2.9522 15 6 6.5054 -1.7261 2.0711 16 6 6.2654 -1.1936 0.6550 17 1 7.2168 -0.9107 0.2047 18 6 5.5983 -2.2775 -0.1943 19 6 6.5101 -3.5042 -0.2638 20 7 5.9304 -4.4924 -1.1768 21 6 6.5753 -5.6797 -1.3997 22 1 7.5110 -5.8877 -0.9020 23 6 6.0263 -6.6159 -2.2652 24 7 6.6465 -7.7569 -2.4798 25 14 4.4083 -6.2558 -3.1264 26 1 4.6765 -5.5820 -4.4222 27 1 3.6838 -7.5288 -3.3710 28 1 3.5784 -5.3704 -2.2704 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.2484 4.3867 0.0009 33 1 3.6932 4.6436 -0.0005 34 1 5.1349 2.6241 0.0082 35 1 4.9584 1.8211 1.6566 36 1 6.6746 1.5592 1.2526 37 1 5.0761 0.1399 3.4333 38 1 6.3837 1.3236 3.6752 39 1 7.2384 -0.9786 3.9542 40 1 7.9690 -0.2114 2.5242 41 1 5.5669 -2.0948 2.4852 42 1 7.2320 -2.5378 2.0363 43 1 5.4256 -1.8957 -1.2005 44 1 4.6462 -2.5575 0.2564 45 1 7.4933 -3.2059 -0.6277 46 1 6.6077 -3.9411 0.7301 47 1 5.0903 -4.3054 -1.6239 48 1 6.2626 -8.4112 -3.0843 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496415214.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:17 Heat of formation + Delta-G solvation = -25.561026 kcal Electronic energy + Delta-G solvation = -29675.053026 eV Core-core repulsion = 25730.635455 eV Total energy + Delta-G solvation = -3944.417570 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.24174 -40.99337 -38.98477 -38.36955 -37.17641 -35.02565 -34.08243 -33.26260 -32.61293 -31.75693 -29.56982 -28.32699 -26.92139 -25.46276 -25.06215 -24.23073 -23.58433 -22.26837 -21.95710 -20.50645 -19.72590 -19.33378 -18.17742 -17.95628 -17.23789 -17.01860 -16.63449 -16.30708 -16.22946 -15.84154 -15.72587 -15.37431 -15.19059 -15.00812 -14.79379 -14.51840 -14.37981 -14.35402 -14.22523 -13.89071 -13.64893 -13.50449 -13.05195 -12.87163 -12.82273 -12.68200 -12.39776 -12.25774 -12.14611 -11.95029 -11.88915 -11.84254 -11.59245 -11.45324 -11.00454 -10.86608 -10.84570 -10.08666 -9.65770 -9.46575 -9.32641 -8.08073 -5.40013 -0.27114 0.21236 1.32927 1.33558 1.43356 1.68752 1.93444 2.06745 2.43083 2.71758 3.17713 3.23116 3.41742 3.67845 3.78282 3.85436 3.89765 3.95725 4.00231 4.09352 4.21120 4.26756 4.31371 4.32902 4.36194 4.45422 4.48249 4.51619 4.64077 4.67424 4.70727 4.78514 4.88207 4.91726 4.96065 5.06475 5.08848 5.15752 5.23390 5.36256 5.38168 5.42098 5.49100 5.67852 5.70863 6.15736 6.17660 6.39667 6.74100 7.02424 7.19156 7.80829 7.99816 9.13551 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011611 B = 0.003665 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2410.862289 B = 7638.881547 C = 9443.841058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.319 6.319 3 C 0.339 3.661 4 N -0.560 5.560 5 C 0.157 3.843 6 C -0.200 4.200 7 C -0.008 4.008 8 C -0.228 4.228 9 C 0.555 3.445 10 O -0.557 6.557 11 N -0.600 5.600 12 C 0.092 3.908 13 C -0.131 4.131 14 C -0.114 4.114 15 C -0.132 4.132 16 C 0.158 3.842 17 H 0.091 0.909 18 C -0.096 4.096 19 C 0.150 3.850 20 N -0.763 5.763 21 C -0.234 4.234 22 H 0.063 0.937 23 C -0.059 4.059 24 N -0.980 5.980 25 Si 0.949 3.051 26 H -0.278 1.278 27 H -0.286 1.286 28 H -0.268 1.268 29 H 0.062 0.938 30 H 0.105 0.895 31 H 0.068 0.932 32 H 0.201 0.799 33 H 0.189 0.811 34 H 0.175 0.825 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.048 0.952 38 H 0.107 0.893 39 H 0.074 0.926 40 H 0.082 0.918 41 H 0.046 0.954 42 H 0.076 0.924 43 H 0.061 0.939 44 H 0.047 0.953 45 H 0.028 0.972 46 H 0.028 0.972 47 H 0.361 0.639 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.457 34.718 13.152 37.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.225 6.225 3 C 0.160 3.840 4 N -0.284 5.284 5 C 0.000 4.000 6 C -0.219 4.219 7 C -0.034 4.034 8 C -0.235 4.235 9 C 0.343 3.657 10 O -0.436 6.436 11 N -0.333 5.333 12 C -0.029 4.029 13 C -0.169 4.169 14 C -0.152 4.152 15 C -0.170 4.170 16 C 0.055 3.945 17 H 0.109 0.891 18 C -0.134 4.134 19 C 0.024 3.976 20 N -0.408 5.408 21 C -0.364 4.364 22 H 0.081 0.919 23 C -0.251 4.251 24 N -0.631 5.631 25 Si 0.777 3.223 26 H -0.204 1.204 27 H -0.212 1.212 28 H -0.194 1.194 29 H 0.080 0.920 30 H 0.123 0.877 31 H 0.087 0.913 32 H 0.218 0.782 33 H 0.207 0.793 34 H 0.193 0.807 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.067 0.933 38 H 0.126 0.874 39 H 0.093 0.907 40 H 0.100 0.900 41 H 0.065 0.935 42 H 0.094 0.906 43 H 0.080 0.920 44 H 0.066 0.934 45 H 0.046 0.954 46 H 0.046 0.954 47 H 0.193 0.807 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.273 33.686 12.857 36.782 hybrid contribution -0.522 -0.861 -0.831 1.306 sum -7.796 32.824 12.025 35.816 Atomic orbital electron populations 1.23047 0.75856 1.04100 1.02709 1.86384 1.24404 1.25210 1.86505 1.20054 0.88627 0.85276 0.89993 1.67494 1.40766 0.99252 1.20906 1.23446 0.94628 0.93491 0.88392 1.22416 0.93976 1.01046 1.04492 1.22123 1.02515 0.89058 0.89680 1.20033 0.91281 0.95862 1.16277 1.18386 0.80705 0.87048 0.79526 1.90922 1.70362 1.37736 1.44557 1.48117 1.22039 1.20030 1.43153 1.22467 1.02742 0.88261 0.89435 1.21931 0.99228 0.99382 0.96391 1.21525 0.98954 0.94816 0.99894 1.22026 1.01348 0.99489 0.94176 1.21181 0.92766 0.84254 0.96275 0.89092 1.21976 0.97044 0.93794 1.00554 1.20984 0.95469 0.88927 0.92258 1.42843 1.25895 1.17526 1.54538 1.19113 1.03720 0.92927 1.20687 0.91853 1.25396 1.02185 0.96224 1.01250 1.69859 1.41879 1.09291 1.42047 0.85485 0.80776 0.76983 0.79037 1.20368 1.21243 1.19385 0.91976 0.87696 0.91312 0.78240 0.79350 0.80736 0.88042 0.87972 0.93334 0.87431 0.90738 0.89961 0.93516 0.90584 0.92012 0.93432 0.95366 0.95448 0.80655 0.93167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.83 10.38 113.37 1.18 2.01 16 2 O -0.32 -9.96 9.24 -71.81 -0.66 -10.62 16 3 C 0.34 8.97 7.48 85.13 0.64 9.61 16 4 N -0.56 -11.45 9.21 -308.00 -2.84 -14.29 16 5 C 0.16 1.75 11.17 84.71 0.95 2.69 16 6 C -0.20 -1.50 10.09 22.32 0.23 -1.27 16 7 C -0.01 -0.11 7.48 22.72 0.17 0.06 16 8 C -0.23 -5.41 5.21 -19.91 -0.10 -5.52 16 9 C 0.55 16.80 7.11 86.69 0.62 17.41 16 10 O -0.56 -22.81 11.51 11.41 0.13 -22.67 16 11 N -0.60 -14.12 2.98 -798.69 -2.38 -16.50 16 12 C 0.09 1.15 4.88 86.36 0.42 1.58 16 13 C -0.13 -1.59 6.08 30.67 0.19 -1.40 16 14 C -0.11 -1.70 5.88 30.62 0.18 -1.52 16 15 C -0.13 -3.13 4.86 30.67 0.15 -2.98 16 16 C 0.16 4.30 3.01 44.98 0.14 4.44 16 17 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 18 C -0.10 -3.68 3.26 30.59 0.10 -3.58 16 19 C 0.15 6.57 5.76 86.38 0.50 7.07 16 20 N -0.76 -41.57 5.41 -343.45 -1.86 -43.43 16 21 C -0.23 -14.62 10.47 84.03 0.88 -13.74 16 22 H 0.06 4.21 8.06 -2.91 -0.02 4.18 16 23 C -0.06 -3.75 5.50 84.86 0.47 -3.29 16 24 N -0.98 -66.11 13.97 21.65 0.30 -65.81 16 25 Si 0.95 50.84 27.74 68.60 1.90 52.75 16 26 H -0.28 -14.47 7.11 99.48 0.71 -13.76 16 27 H -0.29 -14.97 7.11 99.48 0.71 -14.27 16 28 H -0.27 -13.98 6.52 99.48 0.65 -13.34 16 29 H 0.06 1.30 8.10 -2.39 -0.02 1.28 16 30 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.07 1.31 8.10 -2.38 -0.02 1.30 16 32 H 0.20 0.60 8.06 -2.91 -0.02 0.57 16 33 H 0.19 -0.24 8.06 -2.91 -0.02 -0.26 16 34 H 0.18 1.20 6.46 -2.91 -0.02 1.18 16 35 H 0.10 1.03 4.61 -2.38 -0.01 1.02 16 36 H 0.10 0.72 8.11 -2.39 -0.02 0.70 16 37 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.08 1.91 6.89 -2.39 -0.02 1.89 16 43 H 0.06 2.66 6.47 -2.39 -0.02 2.65 16 44 H 0.05 2.08 7.01 -2.38 -0.02 2.06 16 45 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 46 H 0.03 1.19 6.87 -2.38 -0.02 1.17 16 47 H 0.36 19.79 5.53 -92.71 -0.51 19.28 16 48 H 0.26 16.57 8.31 -92.71 -0.77 15.80 16 Total: -1.00 -89.21 375.16 1.68 -87.52 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: 0.40 Total: 21.48 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: 6.68 Total: 11.57 kcal Atomic # 7 Polarization: -133.26 SS G_CDS: -6.77 Total: -140.03 kcal Atomic # 8 Polarization: -32.76 SS G_CDS: -0.53 Total: -33.29 kcal Atomic # 14 Polarization: 50.84 SS G_CDS: 1.90 Total: 52.75 kcal Total: -89.21 1.68 -87.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496415214.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.960 kcal (2) G-P(sol) polarization free energy of solvation -89.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds