Wall clock time and date at job start Tue Mar 31 2020 17:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42907 * 113.99850 * 2 1 4 4 C 1.50704 * 109.46907 * 179.97438 * 3 2 1 5 5 C 1.38349 * 120.34847 * 269.97743 * 4 3 2 6 6 N 1.31930 * 121.07721 * 180.02562 * 5 4 3 7 7 C 1.31694 * 121.87806 * 359.65904 * 6 5 4 8 8 C 1.39524 * 120.56657 * 0.62872 * 7 6 5 9 9 C 1.47842 * 120.55522 * 179.68225 * 8 7 6 10 10 O 1.21549 * 119.99486 * 179.72049 * 9 8 7 11 11 N 1.34776 * 120.00162 * 359.72489 * 9 8 7 12 12 C 1.46501 * 119.99731 * 179.97438 * 11 9 8 13 13 H 1.08997 * 110.01993 * 34.93363 * 12 11 9 14 14 C 1.53876 * 110.03274 * 273.54605 * 12 11 9 15 15 C 1.54267 * 106.59870 * 240.71671 * 14 12 11 16 16 C 1.54891 * 104.19324 * 336.39035 * 15 14 12 17 17 C 1.54261 * 110.03258 * 156.37734 * 12 11 9 18 18 H 1.09001 * 110.48691 * 24.08270 * 17 12 11 19 19 C 1.52994 * 110.48660 * 261.57285 * 17 12 11 20 20 N 1.46506 * 109.47382 * 175.00024 * 19 17 12 21 21 C 1.36933 * 120.00280 * 180.02562 * 20 19 17 22 22 H 1.07995 * 119.99858 * 359.97438 * 21 20 19 23 23 C 1.38813 * 119.99785 * 179.97438 * 21 20 19 24 24 N 1.31622 * 119.99621 * 179.97438 * 23 21 20 25 25 Si 1.86798 * 120.00151 * 359.97438 * 23 21 20 26 26 H 1.48497 * 109.47530 * 89.99952 * 25 23 21 27 27 H 1.48502 * 109.46913 * 210.00002 * 25 23 21 28 28 H 1.48501 * 109.47174 * 329.99527 * 25 23 21 29 29 C 1.38356 * 120.34400 * 90.00105 * 4 3 2 30 30 H 1.08998 * 109.47229 * 300.00340 * 1 2 3 31 31 H 1.09001 * 109.46807 * 60.00077 * 1 2 3 32 32 H 1.08994 * 109.46867 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47271 * 59.99929 * 3 2 1 34 34 H 1.08995 * 109.46818 * 299.99285 * 3 2 1 35 35 H 1.07995 * 119.46154 * 0.02562 * 5 4 3 36 36 H 1.08004 * 119.71421 * 180.31310 * 7 6 5 37 37 H 0.96995 * 120.00454 * 359.97438 * 11 9 8 38 38 H 1.08995 * 110.03160 * 359.97438 * 14 12 11 39 39 H 1.08998 * 110.03319 * 121.42949 * 14 12 11 40 40 H 1.09004 * 110.48597 * 95.06674 * 15 14 12 41 41 H 1.08994 * 110.48679 * 217.71200 * 15 14 12 42 42 H 1.09005 * 110.75269 * 279.62515 * 16 15 14 43 43 H 1.08999 * 110.75712 * 156.25949 * 16 15 14 44 44 H 1.09002 * 109.47471 * 294.99772 * 19 17 12 45 45 H 1.08999 * 109.47564 * 54.99923 * 19 17 12 46 46 H 0.96999 * 119.99567 * 359.97438 * 20 19 17 47 47 H 0.97000 * 119.99607 * 180.02562 * 24 23 21 48 48 H 1.07997 * 120.86076 * 359.97438 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5126 1.1865 0.0006 5 6 4.2090 1.1320 1.1948 6 7 5.5241 1.0283 1.2122 7 6 6.2314 0.9656 0.1031 8 6 5.6047 1.0204 -1.1422 9 6 6.3997 0.9569 -2.3871 10 8 5.8428 1.0004 -3.4666 11 7 7.7418 0.8507 -2.3250 12 6 8.5295 0.7872 -3.5586 13 1 8.0715 1.4111 -4.3262 14 6 8.6239 -0.6681 -4.0494 15 6 10.1227 -1.0333 -4.0598 16 6 10.8454 0.3318 -4.1747 17 6 9.9741 1.2557 -3.2879 18 1 10.2262 1.1261 -2.2354 19 6 10.1496 2.7177 -3.7032 20 7 11.4901 3.1744 -3.3280 21 6 11.8771 4.4592 -3.6009 22 1 11.1943 5.1358 -4.0932 23 6 13.1471 4.8920 -3.2449 24 7 13.5192 6.1269 -3.5077 25 14 14.3279 3.7220 -2.3927 26 1 15.1305 2.9993 -3.4119 27 1 15.2343 4.4934 -1.5046 28 1 13.5575 2.7433 -1.5841 29 6 4.2098 1.1311 -1.1931 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6886 1.8465 0.8900 34 1 1.6887 1.8463 -0.8900 35 1 3.6672 1.1750 2.1281 36 1 7.3064 0.8759 0.1581 37 1 8.1863 0.8163 -1.4635 38 1 8.0841 -1.3272 -3.3695 39 1 8.2126 -0.7503 -5.0555 40 1 10.3996 -1.5347 -3.1324 41 1 10.3562 -1.6620 -4.9190 42 1 10.8506 0.6804 -5.2075 43 1 11.8605 0.2657 -3.7831 44 1 10.0245 2.8064 -4.7824 45 1 9.4026 3.3308 -3.1992 46 1 12.1033 2.5668 -2.8855 47 1 14.4067 6.4292 -3.2592 48 1 3.6916 1.1716 -2.1397 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496886533.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:57 Heat of formation + Delta-G solvation = -38.846273 kcal Electronic energy + Delta-G solvation = -27976.226521 eV Core-core repulsion = 24031.232859 eV Total energy + Delta-G solvation = -3944.993662 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.04239 -39.74154 -38.26452 -37.92533 -34.71813 -33.93457 -33.32141 -32.21821 -31.56126 -29.09188 -28.10577 -27.66585 -26.00638 -25.05119 -24.15883 -23.05345 -21.84154 -21.15615 -20.23391 -19.82632 -18.17776 -17.51523 -17.39243 -16.91607 -16.86876 -16.37241 -15.90044 -15.54286 -15.26943 -14.79352 -14.69137 -14.44100 -13.96480 -13.83511 -13.70325 -13.50979 -13.35869 -13.21518 -12.90823 -12.66679 -12.42454 -12.31362 -11.94403 -11.93402 -11.70948 -11.12625 -10.98161 -10.85212 -10.59356 -10.51814 -10.45253 -10.38104 -10.26023 -10.20956 -10.08592 -9.72071 -9.59647 -9.55708 -9.10845 -8.89904 -7.23330 -5.76716 -3.12256 0.27404 0.74430 2.59986 2.94029 3.25795 3.35771 3.38204 3.44321 3.65386 3.91812 4.26906 4.33400 4.45740 4.49661 4.52164 4.58471 4.66304 4.69327 4.79456 4.88298 4.92034 4.94116 5.07918 5.18668 5.21586 5.28584 5.44653 5.51652 5.55645 5.62440 5.64212 5.67385 5.72653 5.77968 5.82843 5.94990 6.07543 6.11058 6.13722 6.31584 6.41795 6.44775 6.58996 6.65828 6.76713 7.33045 7.44971 7.99677 8.02844 8.42204 9.21280 9.93358 10.13328 11.41783 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015474 B = 0.002361 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.033062 B =11855.118137 C =12715.239919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.386 6.386 3 C 0.107 3.893 4 C -0.154 4.154 5 C 0.142 3.858 6 N -0.486 5.486 7 C 0.142 3.858 8 C -0.185 4.185 9 C 0.564 3.436 10 O -0.533 6.533 11 N -0.713 5.713 12 C 0.148 3.852 13 H 0.097 0.903 14 C -0.131 4.131 15 C -0.125 4.125 16 C -0.113 4.113 17 C -0.107 4.107 18 H 0.079 0.921 19 C 0.165 3.835 20 N -0.754 5.754 21 C -0.243 4.243 22 H 0.089 0.911 23 C 0.003 3.997 24 N -0.934 5.934 25 Si 0.885 3.115 26 H -0.284 1.284 27 H -0.291 1.291 28 H -0.278 1.278 29 C 0.004 3.996 30 H 0.043 0.957 31 H 0.044 0.956 32 H 0.088 0.912 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.161 0.839 36 H 0.162 0.838 37 H 0.399 0.601 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.065 0.935 42 H 0.075 0.925 43 H 0.070 0.930 44 H 0.030 0.970 45 H 0.026 0.974 46 H 0.360 0.640 47 H 0.259 0.741 48 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.204 -16.115 7.882 29.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.305 6.305 3 C 0.031 3.969 4 C -0.156 4.156 5 C -0.015 4.015 6 N -0.193 5.193 7 C -0.016 4.016 8 C -0.191 4.191 9 C 0.350 3.650 10 O -0.411 6.411 11 N -0.364 5.364 12 C 0.043 3.957 13 H 0.115 0.885 14 C -0.170 4.170 15 C -0.163 4.163 16 C -0.151 4.151 17 C -0.127 4.127 18 H 0.098 0.902 19 C 0.038 3.962 20 N -0.399 5.399 21 C -0.373 4.373 22 H 0.107 0.893 23 C -0.193 4.193 24 N -0.582 5.582 25 Si 0.716 3.284 26 H -0.211 1.211 27 H -0.218 1.218 28 H -0.204 1.204 29 C -0.022 4.022 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.106 0.894 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.179 0.821 36 H 0.179 0.821 37 H 0.235 0.765 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.094 0.906 43 H 0.089 0.911 44 H 0.048 0.952 45 H 0.044 0.956 46 H 0.193 0.807 47 H 0.069 0.931 48 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -23.051 -16.027 7.813 29.143 hybrid contribution 0.547 -0.400 0.302 0.742 sum -22.504 -16.427 8.116 29.020 Atomic orbital electron populations 1.22787 0.80508 1.03101 1.00224 1.87976 1.20005 1.27091 1.95470 1.21236 0.88499 0.85453 1.01758 1.20567 0.95936 1.04865 0.94214 1.22917 0.89925 0.91041 0.97594 1.67776 1.07832 1.12853 1.30852 1.23086 1.00419 0.91288 0.86817 1.21047 0.95139 1.07830 0.95038 1.17966 0.82297 0.76518 0.88235 1.90783 1.70952 1.49833 1.29501 1.46099 1.05990 1.74044 1.10231 1.21740 0.91004 0.96750 0.86197 0.88470 1.22546 0.96945 0.95712 1.01793 1.22386 0.94604 0.97689 1.01578 1.22494 0.98604 0.93508 1.00530 1.22499 0.92645 0.96987 1.00534 0.90243 1.20666 0.88006 0.89939 0.97612 1.42667 1.12189 1.12199 1.72884 1.19059 0.98484 0.87247 1.32503 0.89277 1.24683 0.97323 0.96139 1.01122 1.69707 1.20051 1.15713 1.52762 0.86534 0.81573 0.80668 0.79650 1.21064 1.21772 1.20406 1.21634 0.92466 0.89159 0.98948 0.93810 0.93778 0.89370 0.91637 0.91719 0.82136 0.82122 0.76514 0.91621 0.91067 0.91824 0.91627 0.90596 0.91117 0.95171 0.95626 0.80690 0.93079 0.83338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.26 16 2 O -0.39 -3.21 10.69 -35.23 -0.38 -3.59 16 3 C 0.11 0.73 6.08 36.01 0.22 0.95 16 4 C -0.15 -1.36 5.52 -104.54 -0.58 -1.93 16 5 C 0.14 1.26 10.85 -17.47 -0.19 1.07 16 6 N -0.49 -5.16 10.35 -12.91 -0.13 -5.29 16 7 C 0.14 1.43 10.71 -17.13 -0.18 1.25 16 8 C -0.19 -2.05 5.89 -104.82 -0.62 -2.67 16 9 C 0.56 7.28 7.77 -12.33 -0.10 7.19 16 10 O -0.53 -8.56 16.10 5.32 0.09 -8.48 16 11 N -0.71 -8.19 4.95 -53.67 -0.27 -8.45 16 12 C 0.15 1.88 2.79 -66.81 -0.19 1.70 16 13 H 0.10 1.42 7.30 -51.93 -0.38 1.05 16 14 C -0.13 -1.48 6.59 -25.61 -0.17 -1.65 16 15 C -0.12 -1.34 6.83 -25.07 -0.17 -1.51 16 16 C -0.11 -1.50 6.19 -24.74 -0.15 -1.65 16 17 C -0.11 -1.52 2.58 -88.97 -0.23 -1.75 16 18 H 0.08 1.08 7.73 -51.93 -0.40 0.68 16 19 C 0.16 3.11 5.54 -4.04 -0.02 3.09 16 20 N -0.75 -17.55 5.30 -59.91 -0.32 -17.87 16 21 C -0.24 -6.89 10.47 -15.06 -0.16 -7.04 16 22 H 0.09 2.73 8.06 -52.49 -0.42 2.30 16 23 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 24 N -0.93 -29.45 13.97 55.49 0.78 -28.68 16 25 Si 0.89 21.95 27.73 -169.99 -4.71 17.23 16 26 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 27 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 28 H -0.28 -6.41 6.52 56.52 0.37 -6.04 16 29 C 0.00 0.05 9.39 -38.87 -0.37 -0.32 16 30 H 0.04 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.31 8.09 -51.93 -0.42 -0.11 16 34 H 0.06 0.38 8.09 -51.93 -0.42 -0.04 16 35 H 0.16 0.99 8.06 -52.49 -0.42 0.56 16 36 H 0.16 1.25 6.42 -52.48 -0.34 0.91 16 37 H 0.40 3.70 6.41 -40.82 -0.26 3.44 16 38 H 0.07 0.72 7.92 -51.93 -0.41 0.31 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.08 1.06 7.97 -51.93 -0.41 0.64 16 43 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.03 0.59 8.02 -51.93 -0.42 0.17 16 45 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.36 8.10 5.50 -40.82 -0.22 7.88 16 47 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 48 H 0.15 1.50 7.74 -52.49 -0.41 1.09 16 LS Contribution 394.28 15.07 5.94 5.94 Total: -1.00 -35.18 394.28 -8.37 -43.56 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -7.49 Total: 7.66 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: -1.88 Total: -2.03 kcal Atomic # 7 Polarization: -60.35 SS G_CDS: 0.06 Total: -60.29 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: -0.29 Total: -12.07 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.71 Total: 17.23 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.18 -8.37 -43.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496886533.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.711 kcal (2) G-P(sol) polarization free energy of solvation -35.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds